BAC Information

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BAC

Clone NameB6Ng01-075F19
Chromosome4 (Build37)
Map Location 66,514,519 - 66,515,757
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075F19.bB6Ng01-075F19.g
ACCDH891943DH891944
length1,221696
definitionDH891943|Mus musculus domesticus DNA, BAC clone: B6Ng01-075F19, 5' end.DH891944|Mus musculus domesticus DNA, BAC clone: B6Ng01-075F19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttttaaacatattaccaagaaggttcaaatatgtcactgaatta
aggctttctttttccaaggaacccataactgatttcctagtagggaagtt
aactgacatgctcctcttcaggactgatattgttatcttctcttccgtgg
tccatctgattatcagttcttatatagtttttttatttttgttgtattta
ttgtcactttactttagttttgtctttgacaatagccatgctaacgtgaa
tgaattacaacctcaacctagtttttattctctgatgcctactgatatta
aacacattttcatcttttattgaccatctgtgcttatcgaaaacttatgt
aaaaaaatcttttgcctgttcttaattggatgattttgatttatcattat
tacttttactgacatgaatacattattatatattgaccttttgaagcttt
tgaatttaatattatcatttttatttttattaattttatttcctatggtt
gtagtgacttatagagaaaaatcattgcttatcctcatatcttaaagtgt
ttctccctaggttttattccagtatttttagaatttgaaactttatgtag
gcatggtattaattgtattccatatatcttatttcataaaacaccctata
ttatagtagcttcaaatattgcaaagattctgctggatccaaccaaaacc
atttcctatttggctcagggtaagcaacctctgtatatgtccttataaca
tttctctcatttcaagagatgtcaagcatcttgttgaaacattaggctag
ctgaagcatgatagcccaaaccctataattagacatatataggtttccat
attatatttctatgcctagtaaatgtattagcaattcatatggataaatt
acctccatctttctaagcctttatttctcttctgccaaatgagacactaa
gagcaacgatctccaggtttggtggttgaaaagagaatacgtataaacac
aaatactaaacgcatgaaattcagaagacgagaccaaagtgtgacattct
accctttcttagaaatgggaacaaacacccatagaggagttacgagacaa
attggagctgtgacgaaaggattgaacatcatgtgattgcatatgcagga
atccatcccatatatcagcttcatgttgacccatttgccatacctagcaa
gattgtgctgaaaggaaccca

gaattctttacagaggcaacagttaaagacatccttaatcatcagggaaa
tgcaaagtcaaaatgaccctgagattccacattacatcagtcagaatagc
taagatcaaaaaagcagataacagcagatgctggggaggatgtggggaaa
gagatatactcctccattgctggtgagactacaagctagtaaaactactt
tgaaaatcagtctgccaattcttgagaaaattggaaattgttctacctaa
agacccagctatactgctcctgggcatatacccaaaaaatcctccatgat
attacaaggacacatgctccactatgttcatagcagccttattataatag
tcagaagctggaaacaacccagatgttcctcaacagaacaatggatacag
aaaatgtggtatatatacacaatggagtactaagcagtgattaaaaacaa
agacttcatgaaatttgcaggcaaatagatggaattaggacatatcatcc
tgagtgaggaaacccagacaaaaagaaacacacacggtatgtactctcta
gtaagtggatactagttcaaaagctcacaatgcctatgacacaacctaca
ggctatatggagaatagaaggaaggaagaccagggggttgatgcttcagg
cctgcattgaggggggaacaggatgattgtgggaggtggatggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66514519_66515757
seq2: B6Ng01-075F19.b_49_1269 (reverse)

seq1  TGGG-TCCTTTCAGCAAAATCTTGCTAGTGTAT-GCAATGGTGTCAACAT  48
      |||| ||||||||||| ||||||||||| |||| ||||  | ||||||||
seq2  TGGGTTCCTTTCAGCACAATCTTGCTAG-GTATGGCAAATGGGTCAACAT  49

seq1  TTGAAAGCTGAT-TATGGGATGGATCCCTGCATATGGCAATCACTAGATG  97
          |||||||| |||||||||||| ||||||||| ||||||||  ||||
seq2  ---GAAGCTGATATATGGGATGGATTCCTGCATAT-GCAATCACATGATG  95

seq1  TTCCATCCTTTCGTCACAGCTCCAAATTTTGTCTCTGTAACTCCTTCTAT  147
      ||| |||||||||||||||||||||  |||||||| |||||||| |||||
seq2  TTCAATCCTTTCGTCACAGCTCCAA--TTTGTCTC-GTAACTCC-TCTAT  141

seq1  GGGTGTTTTGTTCCCATTTCTAAGAAAGGGTAGAATGTCCACACTTTGGT  197
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  GGGTG-TTTGTTCCCATTTCTAAGAAAGGGTAGAATGT-CACACTTTGGT  189

seq1  CTTCGTTCTTCTTGAATTTCATGCGTTTAGTATTTGTTGTTTTATACGTA  247
      | ||| ||||| |||||||||||||||||||||||||   ||||||||||
seq2  C-TCG-TCTTC-TGAATTTCATGCGTTTAGTATTTGT--GTTTATACGTA  234

seq1  TTCTCTTTTTCAACCACCAAACCCTGGAGATCGTTGCTCTTAGTGTCTTC  297
      ||||| ||||||||||||||| ||||||||||||||||||||||||| ||
seq2  TTCTC-TTTTCAACCACCAAA-CCTGGAGATCGTTGCTCTTAGTGTC-TC  281

seq1  ATTTGGCAGAAGAGAAAATAAAGGCTTAGAAAGATGGAGGTAATTTATCC  347
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTTGGCAGAAGAG-AAATAAAGGCTTAGAAAGATGGAGGTAATTTATCC  330

seq1  ATATGAATTTGCTAATACATTTACTAGGCATAGAAATATAATATGGAAAC  397
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAA-TTGCTAATACATTTACTAGGCATAGAAATATAATATGGAAAC  379

seq1  CTATATATGTCTAATTATAGGGTTTGGGCTATCATGCTTCAGCTAGCCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATATGTCTAATTATAGGGTTTGGGCTATCATGCTTCAGCTAGCCTA  429

seq1  ATGTTTCAACAAGATGCTTGACATCTCTTGAAATGAGAGAAATGTTATAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCAACAAGATGCTTGACATCTCTTGAAATGAGAGAAATGTTATAA  479

seq1  GGACATATACAGAGGTTGCTTACCCTGAGCCAAATAGGAAATGGTTTTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATATACAGAGGTTGCTTACCCTGAGCCAAATAGGAAATGGTTTTGG  529

seq1  TTGGATCCAGCAGAATCTTTGCAATATTTGAAGCTACTATAATATAGGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCCAGCAGAATCTTTGCAATATTTGAAGCTACTATAATATAGGGT  579

seq1  GTTTTATGAAATAAGATATATGGAATACAATTAATACCATGCCTACATAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGAAATAAGATATATGGAATACAATTAATACCATGCCTACATAA  629

seq1  AGTTTCAAATTCTAAAAATACTGGAATAAAACCTAGGGAGAAACACTTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAAATTCTAAAAATACTGGAATAAAACCTAGGGAGAAACACTTTA  679

seq1  AGATATGAGGATAAGCAATGATTTTTCTCTATAAGTCACTACAACCATAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGAGGATAAGCAATGATTTTTCTCTATAAGTCACTACAACCATAG  729

seq1  GAAATAAAATTAATAAAAATAAAAATGATAATATTAAATTCAAAAGCTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAATTAATAAAAATAAAAATGATAATATTAAATTCAAAAGCTTC  779

seq1  AAAAGGTCAATATATAATAATGTATTCATGTCAGTAAAAGTAATAATGAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTCAATATATAATAATGTATTCATGTCAGTAAAAGTAATAATGAT  829

seq1  AAATCAAAATCATCCAATTAAGAACAGGCAAAAGATTTTTTTACATAAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAATCATCCAATTAAGAACAGGCAAAAGATTTTTTTACATAAGT  879

seq1  TTTCGATAAGCACAGATGGTCAATAAAAGATGAAAATGTGTTTAATATCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGATAAGCACAGATGGTCAATAAAAGATGAAAATGTGTTTAATATCA  929

seq1  GTAGGCATCAGAGAATAAAAACTAGGTTGAGGTTGTAATTCATTCACGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCATCAGAGAATAAAAACTAGGTTGAGGTTGTAATTCATTCACGTT  979

seq1  AGCATGGCTATTGTCAAAGACAAAACTAAAGTAAAGTGACAATAAATACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCTATTGTCAAAGACAAAACTAAAGTAAAGTGACAATAAATACA  1029

seq1  ACAAAAATAAAAAAACTATATAAGAACTGATAATCAGATGGACCACGGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATAAAAAAACTATATAAGAACTGATAATCAGATGGACCACGGAA  1079

seq1  GAGAAGATAACAATATCAGTCCTGAAGAGGAGCATGTCAGTTAACTTCCC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGATAACAATATCAGTCCTGAAGAGGAGCATGTCAGTTAACTTCCC  1129

seq1  TACTAGGAAATCAGTTATGGGTTCCTTGGAAAAAGAAAGCCTTAATTCAG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGGAAATCAGTTATGGGTTCCTTGGAAAAAGAAAGCCTTAATTCAG  1179

seq1  TGACATATTTGAACCTTCTTGGTAATATGTTTAAAAGAATTC  1239
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATATTTGAACCTTCTTGGTAATATGTTTAAAAGAATTC  1221


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