BAC Information

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BAC

Clone NameB6Ng01-075M01
Chromosome4 (Build37)4 (Build37)
Map Location 145,750,741 - 145,751,889146,092,977 - 146,093,703
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075M01.bB6Ng01-075M01.g
ACCDH892221DH892222
length1,2001,104
definitionDH892221|Mus musculus domesticus DNA, BAC clone: B6Ng01-075M01, 5' end.DH892222|Mus musculus domesticus DNA, BAC clone: B6Ng01-075M01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,750,741 - 145,751,889)(146,092,977 - 146,093,703)
sequence
gaattcatcccatatacagacaccaatcgcagacactattgtggatgaca
attagtgcttgctgacaggagcctgatatggctgtctcctgagaggctct
gccagtgcctaaaaaatacaaaggcagatgcttgcagccaaccaatggac
tgagcactgggtccatatggcagaagttagagaaaggactgaagaagctg
aaaagttttgcaaccctatagggagaacaacaatatcaaacaacaagaca
caccagagctcccaaggactaaatcaccaaccaacgagtacaaatggagc
aacccatgtccccagctacatatttaatagaggatggtcatgttgggcat
gcctgggaggagaggtcctaggtcctgtgtagacttgatggcccagtgta
cattaatgccagggaacggagacaggagtaggtgggggcatgtgggagga
ccctcatagaagcaggcgggaaataatagggggtttctggaggggaaccg
ggaaaggggataacatttgaaatataaataaataaaatatacaaaaaatt
agtcaccaagatatttaagtaaaatggaatattgaaagtgtcttaatcat
acaccaatagccaaggtcctcatttgtacccccccatcctcagtgtaccc
cctcttcctatctttgtaaatgggagcctcatgaacctaataagtcaagc
tatgccttgaatttgcccctttttacatctaaaatttctacatctacagt
ttttacatctaatttctacatttttttacatctaaaatttccttagtaca
attataaaatttacaacttctctcttgctgtccatgcttactatcactta
ttagcgtcaaggatgaatcctataaaaatatgtcctactttccctgaatc
ctctcagactctgagctgcattgtttcaacccacaccctgcactgtactc
tggtcatggtctcatcctgacctcacaccacaagttcctgactaatcagc
gctttcgaaacttcacctactgatgtatctttttgagttttctatgtgac
ttctagatctctgctctgcctcatctctcagactcccttggattcttcca
ccctggtgcagccaggcacaatggccaggcagccttgcttatgctttcaa
ttctagtattacatccttttacttagaacagtttttttttctgaacttgg

gaattcatcagagaattcatacaggagagaaaccttacaaatgcagtgaa
tgtggcaaatgctttactgaaaaaagcagtctgagaattcatcagagaat
tcatacaggacagaaaccttacaaatgcagtgaatgtggcaaatgcttta
cccaacaatccaatcttagtattcatcagagaattcatacaggagagaaa
ccttacaaatgcagtgaatgtgacaaatgctttacccaacaatccaatct
tagtattcatcagagaattcatacaggagagaaaccttacaaatgcagtg
aatgtgacaaatgcttttcccgaaaattccatcttggtattcatcagaga
attcatacaggagagaatccttataaatgtagtgaatgtaacaaatgctt
tacccaaaattcctatcttaatattcatcagagaattcatgcaggagaga
aaccttacaaatgcagtgaatgtgacaaatgctttactgaaaaaggcagt
ctgacaattcatcagagaattcatacaggagagaaaccttacaaatgtag
tgaatgtgacaaatgcttttcccgaaaattccatcttggtattcatcaga
gaattcatacaagagagaaacctcacaaatgtagtgaatgtgacaaatgc
tttacccagaaatcccatcttagtattcatcagaaaattcatacaagaga
gaaaccttacaaatagattgtatgtgacaaatacaatactcacaatgtca
gtctgagaaatcatcagttatttcatgcagtagagaatctttataaatga
agtgaacgagacaatcctttaccaagatatatcatctcaaaattcattag
agaatacttagagaagacaaacttttcaaatatattgtaggtatgaatcc
tttccttttggcctagttcctagaatataacagtgaatatacttacaggc
tagaaacttaactcatgcattgtatgaagaaatagcttgacttcatttca
gtcagagagacatctagactttttagggtaagtattctgtaggaaaatgt
tgtattctgacacacttgagctccacactagagatagtttgatttgaaaa
tctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145750741_145751889
seq2: B6Ng01-075M01.b_91_1242

seq1  CAATTAGTGCTTGCTGACAGGAGCCTGATATGGCTGTCTCCTGAGAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGTGCTTGCTGACAGGAGCCTGATATGGCTGTCTCCTGAGAGGCT  50

seq1  CTGCCAGTGCCTAAAAAATACAAAGGCAGATGCTTGCAGCCAACCAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGTGCCTAAAAAATACAAAGGCAGATGCTTGCAGCCAACCAATGG  100

seq1  ACTGAGCACTGGGTCCATATGGCAGAAGTTAGAGAAAGGACTGAAGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCACTGGGTCCATATGGCAGAAGTTAGAGAAAGGACTGAAGAAGC  150

seq1  TGAAAAGTTTTGCAACCCTATAGGGAGAACAACAATATCAAACAACCAGA  200
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGAAAAGTTTTGCAACCCTATAGGGAGAACAACAATATCAAACAACAAGA  200

seq1  CACACCAGAGCTCCCAAGGACTAAATCACCAACCAACGAGTACAAATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGAGCTCCCAAGGACTAAATCACCAACCAACGAGTACAAATGGA  250

seq1  GCAACCCATGTCCCCAGCTACATATTTAATAGAGGATGGTCATGTTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCCATGTCCCCAGCTACATATTTAATAGAGGATGGTCATGTTGGGC  300

seq1  ATGCCTGGGAGGAGAGGTCCTAGGTCCTGTGTAGACTTGATGGCCCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGGAGGAGAGGTCCTAGGTCCTGTGTAGACTTGATGGCCCAGTG  350

seq1  TACATTAATGCCAGGGAACGGAGACAGGAGTAGGTGGGGGCATGTGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAATGCCAGGGAACGGAGACAGGAGTAGGTGGGGGCATGTGGGAG  400

seq1  GACCCTCATAGAAGCAGGCGGGAAATAATAGGGGGTTTCTGGAGGGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCATAGAAGCAGGCGGGAAATAATAGGGGGTTTCTGGAGGGGAAC  450

seq1  CGGGAAAGGGGATAACATTTGAAATATAAATAAATAAAATATACAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAAGGGGATAACATTTGAAATATAAATAAATAAAATATACAAAAAA  500

seq1  TTAGTCACCAAGACATTTAAGTAAAATGGAATATTGAAAGTGTCTTAATC  550
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTAGTCACCAAGATATTTAAGTAAAATGGAATATTGAAAGTGTCTTAATC  550

seq1  ATACACCAATAGCCAAGGTCCTCATTTGTACCCCCCCATCCTCAGTGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCAATAGCCAAGGTCCTCATTTGTACCCCCCCATCCTCAGTGTAC  600

seq1  CCCCTCTTCCTATCTTTGTAAATGGGAGCCTCATGAACCTAATAAGTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTTCCTATCTTTGTAAATGGGAGCCTCATGAACCTAATAAGTCAA  650

seq1  GCTATGCCTTGAATTTGCCCCTTTTTACATCTAAAATTTCTACATCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCCTTGAATTTGCCCCTTTTTACATCTAAAATTTCTACATCTACA  700

seq1  GTTTTTACATCTAATTTCTACATTTTTTTACATATAAAATTTCCTTAGTA  750
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTTTTACATCTAATTTCTACATTTTTTTACATCTAAAATTTCCTTAGTA  750

seq1  CAATTATAAAATTTACAACTTCTCTCTTGCTGTCCATGCTTACTATCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATAAAATTTACAACTTCTCTCTTGCTGTCCATGCTTACTATCACT  800

seq1  TATTAGCGTCAAGGATGAATCCTATAAAAATATGTCCTACTTTCCCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCGTCAAGGATGAATCCTATAAAAATATGTCCTACTTTCCCTGAA  850

seq1  TCCTCTCAGACTCTGAGCTGCATTG-TTCAACCCACACCCTGCACTGTAC  899
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCCTCTCAGACTCTGAGCTGCATTGTTTCAACCCACACCCTGCACTGTAC  900

seq1  TCTGGTCATGGTCTCATCCTGACCTCACACCACAAGTTCCTGACTAATCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCATGGTCTCATCCTGACCTCACACCACAAGTTCCTGACTAATCA  950

seq1  GCGCTTTCGAAACTTCACCTACTGATGTATCTTTTTGAGTTTTCTATGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTTCGAAACTTCACCTACTGATGTATCTTTTTGAGTTTTCTATGTG  1000

seq1  ACTTCCTAGATCTCTGCTCTG-CTCATCTTCTCAGACCTCCTTTGGATTC  1048
      |||| |||||||||||||||| |||||| ||||||| |||| ||||||||
seq2  ACTT-CTAGATCTCTGCTCTGCCTCATC-TCTCAGA-CTCCCTTGGATTC  1047

seq1  -TCCACCCTGTGGCAGGCAAGCAC-ATGG-CAGGCAGCCTCGCTATGGCC  1095
       |||||||||  |||| || |||| |||| |||||||||| |||   || 
seq2  TTCCACCCTGGTGCAGCCAGGCACAATGGCCAGGCAGCCTTGCTTATGCT  1097

seq1  TTCAAATTCCAAGTATTACAT-CTTTTACTTAAGAAACA---TTTTTTTC  1141
      |||||  | | |||||||||| ||||||||||   ||||   ||||||||
seq2  TTCAA--TTCTAGTATTACATCCTTTTACTTA--GAACAGTTTTTTTTTC  1143

seq1  TG-ACTTGG  1149
      || ||||||
seq2  TGAACTTGG  1152

seq1: chr4_146092977_146093703
seq2: B6Ng01-075M01.g_456_1169

seq1  ACAAATGCTTTACCAAACCATCCCATCTTAGTATTCATCAGAGAATTCAT  50
      |||||||||||||| ||   ||| |||||| |||||||||||||||||||
seq2  ACAAATGCTTTACCCAAAATTCCTATCTTAATATTCATCAGAGAATTCAT  50

seq1  ACAGGAGAGAAACCTTACAAATGCAGTGAATGTGAAAAATGCTTTAATGA  100
       |||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  GCAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACTGA  100

seq1  AAAAAACATTCTGAAAATTCATCAGAGAATTCATACAGGAGAGAGACCTT  150
      ||||  || ||||| ||||||||||||||||||||||||||||| |||||
seq2  AAAAGGCAGTCTGACAATTCATCAGAGAATTCATACAGGAGAGAAACCTT  150

seq1  ACAAATGTAGTGAATGTGACAAATGCTTTTCCCGAAAATTCCATCTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTAGTGAATGTGACAAATGCTTTTCCCGAAAATTCCATCTTGGT  200

seq1  ATTCATCAGAGAATTCATACAGGAAAGAAACCTTACAAATGTAGTGAATG  250
      ||||||||||||||||||||| || |||||||| ||||||||||||||||
seq2  ATTCATCAGAGAATTCATACAAGAGAGAAACCTCACAAATGTAGTGAATG  250

seq1  TGACAAATGCTTTACCCAGAAATCCCATCTTAGTATTCATCAGAAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATGCTTTACCCAGAAATCCCATCTTAGTATTCATCAGAAAATTC  300

seq1  ATACAGGAGAGAAACCTTACAAATAGAATGTATGTGACAAATACAATACT  350
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATACAAGAGAGAAACCTTACAAATAGATTGTATGTGACAAATACAATACT  350

seq1  CACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTAGAGAATCT  400
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  CACAATGTCAGTCTGAGAAATCATCAGTTATTTCATGCAGTAGAGAATCT  400

seq1  TTATAAATGAAGTGAACGAGACAATCCTTTACCAAGATATATCATCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATGAAGTGAACGAGACAATCCTTTACCAAGATATATCATCTCAA  450

seq1  AATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTGTAG  500

seq1  GTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACAGTGA--AT  548
      ||||||||||||||||||||||||| |||||||| | |||||||||  ||
seq2  GTATGAATCCTTTCCTTTTGGCCTAGTTCCTAGAATATAACAGTGAATAT  550

seq1  ACTTACAGGCTATAAACTTAACTCATGCATTGTATGAAGAAATATCTTTG  598
      |||||||||||| ||||||||||||||||||||||||||||||| | |||
seq2  ACTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATAGC-TTG  599

seq1  ACTTCATTTCAGGTCAGAGAGAACATCTAAGAACTTTTTAGGGTAAAGTA  648
      ||||||||||| ||||||||| |||||||   |||||||||||| |||||
seq2  ACTTCATTTCA-GTCAGAGAG-ACATCTA--GACTTTTTAGGGT-AAGTA  644

seq1  TTTCTGTTGGGGAAAATGTTGTATTCTTGACAACACTTGAGGCTCCACAC  698
       ||||||   |||||||||||||||| |||| |||||||| |||||||||
seq2  -TTCTGT--AGGAAAATGTTGTATTC-TGAC-ACACTTGA-GCTCCACAC  688

seq1  TAGAGAATTAGTATGATTATGAAAATCTT  727
      ||||||  |||| ||||| ||||||||||
seq2  TAGAGA--TAGTTTGATT-TGAAAATCTT  714