BAC Information

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BAC

Clone NameB6Ng01-075O16
Chromosome4 (Build37)
Map Location 27,991,878 - 27,993,048
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040691, Tpm3-rs2
Downstream geneLOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075O16.bB6Ng01-075O16.g
ACCDH892339DH892340
length1,1671,190
definitionDH892339|Mus musculus domesticus DNA, BAC clone: B6Ng01-075O16, 5' end.DH892340|Mus musculus domesticus DNA, BAC clone: B6Ng01-075O16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatctttagccttcaacaaaactggcttctgatctacacacagca
cacattcacacttccttgtcttgttttaagccctatggtacaatgaattt
gagctttggcatttttgaattgggtaaattcctcttgcctttgtatctga
agatgtactgcatgcattattgacagtggcactggaacctctgaggaagc
ttgtgagatagttatttggtatctgagtcatggaaaagaaagattttgat
ggaaacttcattatgccttgtctttaaaatgccatgtgtttgattacttc
tgccaccttcttaatgctacttgtcactatgttttctttctcattgaaat
cagtaggtatcatttaatgcagagtgtagccccatctgtagtgtaaatta
tgcatgtttttattttagctcacttgctttcaaatccaaattcttttttt
ctaaacagcaaaaagttaatttcacatttatgcagctttccatgtgcttt
gtgcttagtagaataaggtttggaaagctgtactcacattttcacttgtc
ttttttaattaaaaaaataaaaagctgaaatgtgttttaacatctttcca
aagtaagtctgaactattatatcatgaccttaggccaaaagtacaattga
actgcttaaagtattcaatattaacttttgttatattcaaaaataaaata
atactttaatgagtataagtttctgtaatttcttttggctttactgaagt
gatgtactttaagctcatgaaatttccttcaccaatatctgtgaagttta
gcataaaaagtgtgcctcctttcaaccctcgacagaatgtgacttcagga
tctgtcaaccattcacttgaaaggtctgatgcttcggcttaaaaatttcc
aattccagtagctgtgaaaaatacaaccagatgactgttaacggatttga
aatatcacattctctccctcagctttgcagcagacactgctatacccatc
ttcagtggatcaaagagaccttctccattctacctcccccacctcctacc
tcccaatgtccatgctttatctgatgaattccatggggaccatcagcatc
tctgcccaggtagcagagatggtagcctagagtcttaacctctttcttct
gctctctcattccaacc
gaattcatatctagaatacacatgaaaaacttctaaaaaaccaaaacatg
aagaaatgaacaatttaatctggaaattgagctactgacctgaataataa
attctcaaaagaagcaacgcgcatggatattaaatacctacacaatcagt
acccataagagaaatgcaattaaattctaccctgagattctatgccaccg
gagtcagattggctttaggaataaatttaggaaaaaattaaaggacaata
gatgcttgagaagattgtgatggggtgcaaactgataaaaccactgtggc
agttgagatggtttaaataaattggttcccatagactccatagggagtgg
cattcttgaggtgtggccttgttggagtaagtgcagcctgttggaggaag
tgtgtcataggtggtcatttttgaagtttcagatgctcaagccagacgca
tggtcaggctcttttcctgctaccttcagattccaatttagaactctgac
ctacctctctagcaccatgtttgacttcatgctgccatgcttcctaccat
gatgataatgaattaaaccttagaagtctaagtcagctccatttaatgtt
ttcccttttaaagactttctatggttatgatgtctcttcacataaataga
aactgtaactaaaccacttaggaggtagaggcatgtggatcattgtgagt
tcaaggccagtctgatctgcagaaagagttccaggacacctaaaactaca
cagagaaatgtgtcttgacaagcaaacaaagaaacacaaagaaggaaaaa
gaaagaaagaaagaagaaagaaagattgaaagaaagaaagaaagaaagaa
gaaagaaagaaggaaggaagaatgaaggaaggatgaatgtatgaagaaga
cggaagtaagaagaacgacgaaagaaagaagaatgaatgaatgaagaaga
agaagaagaagaagagatgaggaaggaagaagttggagaagaagaacaga
agaaggaggaagaaaattgagaaaaccttagacagcattcatatgatttt
ccctcagaaactttaaagacctctggcttcacccaaagagaaaccgttct
catccgtgtttccatgcaactttaatttcgagaatactttgaaagaaagt
cagtttagaatttccacctattgcgatatggcctatgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_27991878_27993048
seq2: B6Ng01-075O16.b_50_1216

seq1  GAATTCATCTTTAGCCTTCAACAAAACTGGCTTCTGATCTACACACAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTTAGCCTTCAACAAAACTGGCTTCTGATCTACACACAGCA  50

seq1  CACATTCACACTTCCTTGTCTTGTTTTAAGCCCTATGGTACAATGAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCACACTTCCTTGTCTTGTTTTAAGCCCTATGGTACAATGAATTT  100

seq1  GAGCTTTGGCATTTTTGAATTGGGTAAATTCCTCTTGCCTTTGTATCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTGGCATTTTTGAATTGGGTAAATTCCTCTTGCCTTTGTATCTGA  150

seq1  AGATGTACTGCATGCATTATTGACAGTGGCACTGGAACCTCTGAGGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTACTGCATGCATTATTGACAGTGGCACTGGAACCTCTGAGGAAGC  200

seq1  TTGTGAGATAGTTATTTGGTATCTGAGTCATGGAAAAGAAAGATTTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGATAGTTATTTGGTATCTGAGTCATGGAAAAGAAAGATTTTGAT  250

seq1  GGAAACTTCATTATGCCTTGTCTTTAAAATGCCATGTGTTTGATTACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTTCATTATGCCTTGTCTTTAAAATGCCATGTGTTTGATTACTTC  300

seq1  TGCCACCTTCTTAATGCTACTTGTCACTATGTTTTCTTTCTCATTGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCTTCTTAATGCTACTTGTCACTATGTTTTCTTTCTCATTGAAAT  350

seq1  CAGTAGGTATCATTTAATGCAGAGTGTAGCCCCATCTGTAGTGTAAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGTATCATTTAATGCAGAGTGTAGCCCCATCTGTAGTGTAAATTA  400

seq1  TGCATGTTTTTATTTTAGCTCACTTGCTTTCAAATCCAAATTCTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTTTTTATTTTAGCTCACTTGCTTTCAAATCCAAATTCTTTTTTT  450

seq1  CTAAACAGCAAAAAGTTAATTTCACATTTATGCAGCTTTCCATGTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAGCAAAAAGTTAATTTCACATTTATGCAGCTTTCCATGTGCTTT  500

seq1  GTGCTTAGTAGAATAAGGTTTGGAAAGCTGTACTCACATTTTCACTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAGTAGAATAAGGTTTGGAAAGCTGTACTCACATTTTCACTTGTC  550

seq1  TTTTTTAATTAAAAAAATAAAAAGCTGAAATGTGTTTTAACATCTTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATTAAAAAAATAAAAAGCTGAAATGTGTTTTAACATCTTTCCA  600

seq1  AAGTAAGTCTGAACTATTATATCATGACCTTAGGCCAAAAGTACAATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGTCTGAACTATTATATCATGACCTTAGGCCAAAAGTACAATTGA  650

seq1  ACTGCTTAAAGTATTCAATATTAACTTTTGTTATATTCAAAAATAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTAAAGTATTCAATATTAACTTTTGTTATATTCAAAAATAAAATA  700

seq1  ATACTTTAATGAGTATAAGTTTCTGTAATTTCTTTTGGCTTTACTGAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTAATGAGTATAAGTTTCTGTAATTTCTTTTGGCTTTACTGAAGT  750

seq1  GATGTACTTTAAGCTCATGAAATTTCCTTCACCAATATCTGTGAAGTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACTTTAAGCTCATGAAATTTCCTTCACCAATATCTGTGAAGTTTA  800

seq1  GCATAAAAAGTGTGCCTCCTTTCAACCCTCGACAGAATGTGACTTCAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAAAGTGTGCCTCCTTTCAACCCTCGACAGAATGTGACTTCAGGA  850

seq1  TCTGTCAACCATTCACTTGAAAGGTCTGATGCTTCGGCTTAAAAATTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAACCATTCACTTGAAAGGTCTGATGCTTCGGCTTAAAAATTTCC  900

seq1  AATTCCAGTAGCTGTGAAAAATACAACCAGATGACTGTTAACGGATTTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGTAGCTGTGAAAAATACAACCAGATGACTGTTAACGGATTTGA  950

seq1  AATATCACATTCTCTCCCCCAGCTTTGCAGCAGAACACCTGCTATACCCA  1000
      |||||||||||||||||| |||||||||||||| ||| ||||||||||||
seq2  AATATCACATTCTCTCCCTCAGCTTTGCAGCAG-ACA-CTGCTATACCCA  998

seq1  TCTTCAGTGGATCAAAGAGACCTTCTCCATTCTAACCTCCCCCACCTCCT  1050
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTTCAGTGGATCAAAGAGACCTTCTCCATTCT-ACCTCCCCCACCTCCT  1047

seq1  ACCTCCC-ATGTCCATGCTTTATCTGATGAATTCCATGGGGACCCATCAG  1099
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  ACCTCCCAATGTCCATGCTTTATCTGATGAATTCCATGGGGA-CCATCAG  1096

seq1  CATCTCCTGCCAGGGAAGCAGAGATGGTAG-CTAGAAGTCTTTACCTC-T  1147
      ||||| |||||  || |||||||||||||| |||| |||||| ||||| |
seq2  CATCT-CTGCCCAGGTAGCAGAGATGGTAGCCTAG-AGTCTTAACCTCTT  1144

seq1  TCTTCTGCTCCTCCAAATCCAACC  1171
      ||||||||| |||  | |||||||
seq2  TCTTCTGCT-CTCTCATTCCAACC  1167