BAC Information

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BAC

Clone NameB6Ng01-076B06
Chromosome4 (Build37)
Map Location 98,508,827 - 98,666,968
singlet/doubletdoublet
Overlap geneLOC100039541, Usp1, Dock7
Upstream geneNfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1, Ankrd38
Downstream geneAngptl3, LOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076B06.bB6Ng01-076B06.g
ACCDH892450DH892451
length1,149568
definitionDH892450|Mus musculus domesticus DNA, BAC clone: B6Ng01-076B06, 5' end.DH892451|Mus musculus domesticus DNA, BAC clone: B6Ng01-076B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,665,798 - 98,666,968)(98,508,827 - 98,509,401)
sequence
gaattctgttcgagaactacaaggacttgttgtccagagctagatagcta
tttctcgagattctaccttacaaatatctcttaatttctatacattgtgc
cttgtttaacaattattctttttatatttcttatataacaaagatttaga
ataaggaagtctatattaattggtattcattttgctttttaagaaaatca
ctaagtgaaacatagtaacaacttgtccaaatatatatgaaattagtata
cacgtgtatatgtaggtgtttatactaatttctttttttttttttttatg
tcatcacagcatgtcttaattaagttttctttctttgagacactgtctca
ttatgtagcccagggtagctttgaactcctggtcctcttgcttcagcctc
ccatgtgctgtgataacaggtatgtgctgccaactgagatctaattaagc
tttattttaagtagttttacatttttcattttcattgaaaaattggtacg
ttactttcatatttttccttaatgttaataacatacttttatcttataaa
aatgtaaggagtcaaaatttttgtatgcctattcttaatttattcttact
tcattgtctaggttatgacgccatatctccttcctttagaggtgacatct
tttgtcttaatcgtgatctttcccatgagtcttccctcaggaccagtcac
ttagcctttatggtttcacttcatgcattttgtcatccttatttctttgt
agtgtcccaactctgggagtttgctttccttttcagcttccactcactta
gtcttgttttcctcaggaggaaagagggaggagtttccaaatgttctgtc
ttcctccttgtcatcataactagtcagaaccagtcatgtgttcttgtcac
aatcaaacctcatatctctttttttctcaaacttaaaaccatccttagaa
acaatggactggctcttctgtgtctgaaaatggcagctagcctcacctga
agtccccgtgcttcagcagcagacattcgtgtgctttcactatttcattc
tgcataggtatgccaagaccacctaataacttctctcttatcttgacact
gtgtcctcagcttttgtcttcgctaagggaaatgtgaggtcctgcttac
tcgggacatttctgagggtatataaatatatagagccctgagaggcaggg
ggggagttggtggtggtggtcactgttggtcattgttggttgcagtttgc
taagaagtagtgcacaaagaagaaacaacaagaagaaattagatatcctg
actgctaaggtcaaacttgcccccaaggaactggatgcccctaaacagca
ggaaatagtctaatgataatatcaccccctttccggcacctaactttatt
cagagatgtcttccctttcccctctatccttttttctctcttatttagtg
ttagggagttgaaaggtaggaggaaagttgtggagaaaggtgagagaaac
cccccacaatgtaacaaagactggctacaggctggagttttagggctcaa
ccccaaagcaaggggccaaggctttgcttaaggaaggacccagggctaag
taggttcaggggggaatatagttcttttcaacagcacttggaggaaaaga
aggaaattcagggtgaagggatctagggtgagggatactcagtcggaacg
ctctgtgtgaacaggcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_98665798_98666968
seq2: B6Ng01-076B06.b_48_1196 (reverse)

seq1  GTAAGCAAAGGGAACCTCACATCTCCCTTAAGCAGAAGACAAAAGCTGGA  50
      |||||||    | ||||||||| |||||| ||| ||||||||||||| ||
seq2  GTAAGCA----GGACCTCACATTTCCCTT-AGC-GAAGACAAAAGCT-GA  43

seq1  GGACACAGTGGTCAAGATTAAGAAGGAGAAGGTATTAGGTGGTCTGTGGC  100
      ||||||||| ||||||| |||||  |||||| ||||||||||||| ||||
seq2  GGACACAGT-GTCAAGA-TAAGA--GAGAAGTTATTAGGTGGTCT-TGGC  88

seq1  AATAACCTATGGCAGAATGAAATAGTGAAAGGCACACGGAATGTCTGCCT  150
      |   |||||| ||||||||||||||||||| |||||| ||||||||| ||
seq2  A--TACCTAT-GCAGAATGAAATAGTGAAA-GCACAC-GAATGTCTG-CT  132

seq1  GCCTGGAGCACGGGGGACTTCAGGTGAGGCTAGCTGCCATTTTCAGGACA  200
      | ||| ||||| ||||||||||||||||||||||||||||||||| ||||
seq2  G-CTGAAGCAC-GGGGACTTCAGGTGAGGCTAGCTGCCATTTTCA-GACA  179

seq1  CAGAAGAGCCAGTCCATTGTTTCTAAGGATGGTTTTAAGTTTGAGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGAAGAGCCAGTCCATTGTTTCTAAGGATGGTTTTAAGTTTGAG-AAAA  228

seq1  AAAGAGATATTGAGGTTTGATTGTGACAAGAACACATGACTGGTTCTGAC  300
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATA-TGAGGTTTGATTGTGACAAGAACACATGACTGGTTCTGAC  277

seq1  TAGTTATGATGACAAGGAGGAAGACAGAACATTTGGAAACTCCTCCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATGATGACAAGGAGGAAGACAGAACATTTGGAAACTCCTCCCTCT  327

seq1  TTCCTCCTGAGGAAAACAAGACTAAGTGAGTGGAAGCTGAAAAGGAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTGAGGAAAACAAGACTAAGTGAGTGGAAGCTGAAAAGGAAAGC  377

seq1  AAACTCCCAGAGTTGGGACACTACAAAGAAATAAGGATGACAAAATGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCCAGAGTTGGGACACTACAAAGAAATAAGGATGACAAAATGCAT  427

seq1  GAAGTGAAACCATAAAGGCTAAGTGACTGGTCCTGAGGGAAGACTCATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAAACCATAAAGGCTAAGTGACTGGTCCTGAGGGAAGACTCATGG  477

seq1  G-AAGATCACGATTAAGACAAAAGATGTCACCTCTAAAGGAAGGAGATAT  549
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCACGATTAAGACAAAAGATGTCACCTCTAAAGGAAGGAGATAT  527

seq1  GGCGTCATAACCTAGACAATGAAGTAAGAATAAATTAAGAATAGGCATAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTCATAACCTAGACAATGAAGTAAGAATAAATTAAGAATAGGCATAC  577

seq1  AAAAATTTTGACTCCTTACATTTTTATAAGATAAAAGTATGTTATTAACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTTGACTCCTTACATTTTTATAAGATAAAAGTATGTTATTAACA  627

seq1  TTAAGGAAAAATATGAAAGTAACGTACCAATTTTTCAATGAAAATGAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAAAAATATGAAAGTAACGTACCAATTTTTCAATGAAAATGAAAA  677

seq1  ATGTAAAACTACTTAAAATAAAGCTTAATTAGATCTCAGTTGGCAGCACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAACTACTTAAAATAAAGCTTAATTAGATCTCAGTTGGCAGCACA  727

seq1  TACCTGTTATCACAGCACATGGGAGGCTGAAGCAAGAGGACCAGGAGTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTTATCACAGCACATGGGAGGCTGAAGCAAGAGGACCAGGAGTTC  777

seq1  AAAGCTACCCTGGGCTACATAATGAGACAGTGTCTCAAAGAAAGAAAACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTACCCTGGGCTACATAATGAGACAGTGTCTCAAAGAAAGAAAACT  827

seq1  TAATTAAGACATGCTGTGATGACATAAAAAAAAAAAAAAAGAAATTAGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAGACATGCTGTGATGACATAAAAAAAAAAAAAAAGAAATTAGTA  877

seq1  TAAACACCTACATATACACGTGTATACTAATTTCATATATATTTGGACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACCTACATATACACGTGTATACTAATTTCATATATATTTGGACAA  927

seq1  GTTGTTACTATGTTTCACTTAGTGATTTTCTTAAAAAGCAAAATGAATAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTACTATGTTTCACTTAGTGATTTTCTTAAAAAGCAAAATGAATAC  977

seq1  CAATTAATATAGACTTCCTTATTCTAAATCTTTGTTATATAAGAAATATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAATATAGACTTCCTTATTCTAAATCTTTGTTATATAAGAAATATA  1027

seq1  AAAAGAATAATTGTTAAACAAGGCACAATGTATAGAAATTAAGAGATATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATAATTGTTAAACAAGGCACAATGTATAGAAATTAAGAGATATT  1077

seq1  TGTAAGGTAGAATCTCGAGAAATAGCTATCTAGCTCTGGACAACAAGTCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGTAGAATCTCGAGAAATAGCTATCTAGCTCTGGACAACAAGTCC  1127

seq1  TTGTAGTTCTCGAACAGAATTC  1171
      ||||||||||||||||||||||
seq2  TTGTAGTTCTCGAACAGAATTC  1149

seq1: chr4_98508827_98509401
seq2: B6Ng01-076B06.g_71_644

seq1  GAATTCTCGGGACATTTCTGAGGGTATATAAATATATAGAGCCCTGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGGGACATTTCTGAGGGTATATAAATATATAGAGCCCTGAGAG  50

seq1  GCAGGGGGGGAGTTGGTGGTGGTGGTCACTGTTGGTCATTGTTGGTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGGGGAGTTGGTGGTGGTGGTCACTGTTGGTCATTGTTGGTTGCA  100

seq1  GTTTGCTAAGAAGTAGTGCACAAAGAAGAAACAACAAGAAGAAATTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTAAGAAGTAGTGCACAAAGAAGAAACAACAAGAAGAAATTAGAT  150

seq1  ATCCTGACTGCTAAGGTCAAACTTGCCCCCAAGGAACTGGATGCCCCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGACTGCTAAGGTCAAACTTGCCCCCAAGGAACTGGATGCCCCTAA  200

seq1  ACAGCAGGAAATAGTCTAATGATAATATCACCCCCTTTCCGGCACCTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGGAAATAGTCTAATGATAATATCACCCCCTTTCCGGCACCTAAC  250

seq1  TTTATTCAGAGATGTCTTCCCTTTCCCCTCTATCCTTTTTTCTCTCTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCAGAGATGTCTTCCCTTTCCCCTCTATCCTTTTTTCTCTCTTAT  300

seq1  TTAGTGTTAGGGAGTTGAAAGGTAGGAGGAAAGTTGTGGAGAAAGGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTTAGGGAGTTGAAAGGTAGGAGGAAAGTTGTGGAGAAAGGTGAG  350

seq1  AGAAACCCCCCACAATGTAACAAAGACTGGCTACAGGCTGGAGTTTTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCCCCACAATGTAACAAAGACTGGCTACAGGCTGGAGTTTTAGG  400

seq1  GCTCAACCCCAAAGCAAGGGGCCAAGGCTTTGCTTAAGGAAGGACCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAACCCCAAAGCAAGGGGCCAAGGCTTTGCTTAAGGAAGGACCCAGG  450

seq1  GCTAAGTAGGTTCAGGGGGGAATATAGTTCTTTTACAACAGCACTTGGAG  500
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCTAAGTAGGTTCAGGGGGGAATATAGTTCTTTT-CAACAGCACTTGGAG  499

seq1  GAAAAGAAGGAAATTCAGGGTGAAGGGATCTAGGGTGAGGGATACTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAGGAAATTCAGGGTGAAGGGATCTAGGGTGAGGGATACTCAGT  549

seq1  CGGAACGCTCTGTGTGAACAGGCTA  575
      |||||||||||||||||||||||||
seq2  CGGAACGCTCTGTGTGAACAGGCTA  574