BAC Information

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BAC

Clone NameB6Ng01-076I04
Chromosome4 (Build37)
Map Location 53,787,828 - 53,899,263
singlet/doubletdoublet
Overlap geneTal2, LOC435784, Tmem38b, LOC670124
Upstream geneLOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd
Downstream geneLOC100041280, LOC666901, LOC100041303, LOC384018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076I04.bB6Ng01-076I04.g
ACCDH892758DH892759
length1,073946
definitionDH892758|Mus musculus domesticus DNA, BAC clone: B6Ng01-076I04, 5' end.DH892759|Mus musculus domesticus DNA, BAC clone: B6Ng01-076I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,898,187 - 53,899,263)(53,787,828 - 53,788,774)
sequence
gaattcacatctctggtattcctttcaagttatcctcttctccctaaatt
accacagcattcactaggtcagacctttctcggccattctcttcatgacc
ctggtggtcactgaagcttacacttcagaagaaaggtctactgtaaggag
attcatgaagagataggctgatctgcctcttgcgtgaggtggagggggac
tgtgagattaggggtgcttattcaccagccagcctctgggaaggatttaa
ggatggggagcaggtggaaggcaccatccttgatgccctctgaccccact
gacccctgcctgcagcaagaagtctattctgggttaccatactgacagtg
tgcccgcttacactccgatttgctgaaattttttaggagatattcttctt
ccatcagttttggatagaaaagaaccccattgcttagagggatgcctgtg
aggaaggagcagagattagaaacaaaaacaaggcgccacatcccgatcag
tttgctcagcatctccatggtactgtggactctgaacgatgaaagttctc
acactccccaggtaaacttgatcccacctcaaagcttgcctctattcaac
gtcaccaccacgggcagcaagggacactggtcctctccaactgggcttgc
tcttaatctaaacataacacatcctctgtattccagcaacatttttcaac
atttttgatcctcacatctctagggaacaccctcattttcatgagtattt
ttacactgagtaaacttatcgctgttttcaaggctggaagagactgactg
cttggcctcagtcttccatcctctacccaaaactgggaagaaaagttcag
tggtttaagtgcacagcaactttagaataggaagaattagcttttcagca
aatttactactaatcaccttttcttcattccagagttttaaatgttatgt
tgtacagtccataaaggttttttttaaaagtctatattctactaataatg
tataacagatgtagctatattttatgtttggtgtcccatattatattttt
atttttagccatctattgacaag
gaattcctacatacctttaagcccccaaagaagttcatcaaaagacttat
caacctaaaggtagctggggttggtggtgcttgcctttaatcccaatact
tgggagaaaaagtcagatagagaggctagccttgtctacatagtgagttc
ccagcctgggctacctactgagacccttttggaaaaacaaaggcaacact
cctgcaaacacaaaggaacaaatccaagacacagaagaagaagatcaaac
cttccaagaatatagagtctgacctactgggagtatatgagaaagcactg
actttcaaacaaggagtaccgctcctcttgtagtgactaggaccctttta
aaaaatgttataagttgtttgaaaaacaactcaaaaaatatatcagagcc
aaaaaaaaaaatactgcatacatctctaagcacaccacaataacattaga
aactaataacaagccattgcaattaacaacaaaaatactaggaagcttta
aaactacttaaacacttagtagaagaggaaaaacaaacaaaaacagactt
tagaaactaaagcagccagatgtcactacacatttctatgacagagacag
gataattgctcacacatccccagcctgggcgtcattgcaaaaccctgtct
caaaaaactgaaataaaaacttaacccattgatgaatctgaaaaggtcaa
aatttgtacagtaaactgccaaaattttatttaaaatgatagaatccatg
acggaaaaaggatatggctgcactgttctgttagatgtcaagaaccagct
atttcgtatgaagaagaaactgggaataccatgtataatgtgttgttggg
agcaggggagaatatctgactggatgaagagacgaataacatcttgaaac
caagaactgaggattgagaaggagtttactgggggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_53898187_53899263
seq2: B6Ng01-076I04.b_48_1120 (reverse)

seq1  CTTGTCAATAGATTGCATAAAATATAAATTATAAATATGTGGACA-CAAA  49
      ||||||||||||| ||  |||||| ||| ||| |||||| ||||| ||||
seq2  CTTGTCAATAGATGGCTAAAAATA-AAAATAT-AATATG-GGACACCAAA  47

seq1  CATAAAATATAGCTTACATCTGTATTACATTATATGTAGAATATAGACTT  99
      ||||||||||||| |||||||||  ||||||||  |||||||||||||||
seq2  CATAAAATATAGC-TACATCTGTTATACATTATTAGTAGAATATAGACTT  96

seq1  TTAAAAAAAACCTTTATGGACTGTACAAACATAACATTTAAAACTCTGGA  149
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTAAAAAAAACCTTTATGGACTGTAC-AACATAACATTTAAAACTCTGGA  145

seq1  ATGAAGAAAAGGTGATTAGTAAGTAAATTTGCTGAAAAGCTAATTCTTCC  199
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGAAGAAAAGGTGATTAGT-AGTAAATTTGCTGAAAAGCTAATTCTTCC  194

seq1  TATTCT-AAGTTGCTGTGCACTTAAACCACTGAACTTTTCTTCCCAGTTT  248
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAAAGTTGCTGTGCACTTAAACCACTGAACTTTTCTTCCCAGTTT  244

seq1  TGGGTAGAGGATGGAAGACTGAGGCCAAGCAGTCAGTCTCTTCCAGCCTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGAGGATGGAAGACTGAGGCCAAGCAGTCAGTCTCTTCCAGCCTT  294

seq1  GAAAACAGCGATAAGTTTACTCAGTGTAAAAATACTCATGAAAATGAGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGCGATAAGTTTACTCAGTGTAAAAATACTCATGAAAATGAGGG  344

seq1  TGTTCCCTAGAGATGTGAGGATCAAAAATGTTGAAAAATGTTGCTGGAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTAGAGATGTGAGGATCAAAAATGTTGAAAAATGTTGCTGGAAT  394

seq1  ACAGAGGATGTGTTATGTTTAGATTAAGAGCAAGCCCAGTTGGAGAGGAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGATGTGTTATGTTTAGATTAAGAGCAAGCCCAGTTGGAGAGGAC  444

seq1  CAGTGTCCCTTGCTGCCCGTGGTGGTGACGTTGAATAGAGGCAAGCTTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCCTTGCTGCCCGTGGTGGTGACGTTGAATAGAGGCAAGCTTTG  494

seq1  AGGTGGGATCAAGTTTACCTGGGGAGTGTGAGAACTTTCATCGTTCAGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGATCAAGTTTACCTGGGGAGTGTGAGAACTTTCATCGTTCAGAG  544

seq1  TCCACAGTACCATGGAGATGCTGAGCAAACTGATCGGGATGTGGCGCCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGTACCATGGAGATGCTGAGCAAACTGATCGGGATGTGGCGCCTT  594

seq1  GTTTTTGTTTCTAATCTCTGCTCCTTCCTCACAGGCATCCCTCTAAGCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTCTAATCTCTGCTCCTTCCTCACAGGCATCCCTCTAAGCAA  644

seq1  TGGGGTTCTTTTCTATCCAAAACTGATGGAAGAAGAATATCTCCTAAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTCTTTTCTATCCAAAACTGATGGAAGAAGAATATCTCCTAAAAA  694

seq1  ATTTCAGCAAATCGGAGTGTAAGCGGGCACACTGTCAGTATGGTAACCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGCAAATCGGAGTGTAAGCGGGCACACTGTCAGTATGGTAACCCA  744

seq1  GAATAGACTTCTTGCTGCAGGCAGGGGTCAGTGGGGTCAGAGGGCATCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGACTTCTTGCTGCAGGCAGGGGTCAGTGGGGTCAGAGGGCATCAA  794

seq1  GGATGGTGCCTTCCACCTGCTCCCCATCCTTAAATCCTTCCCAGAGGCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTGCCTTCCACCTGCTCCCCATCCTTAAATCCTTCCCAGAGGCTG  844

seq1  GCTGGTGAATAAGCACCCCTAATCTCACAGTCCCCCTCCACCTCACGCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGAATAAGCACCCCTAATCTCACAGTCCCCCTCCACCTCACGCAA  894

seq1  GAGGCAGATCAGCCTATCTCTTCATGAATCTCCTTACAGTAGACCTTTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGATCAGCCTATCTCTTCATGAATCTCCTTACAGTAGACCTTTCT  944

seq1  TCTGAAGTGTAAGCTTCAGTGACCACCAGGGTCATGAAGAGAATGGCCGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTGTAAGCTTCAGTGACCACCAGGGTCATGAAGAGAATGGCCGA  994

seq1  GAAAGGTCTGACCTAGTGAATGCTGTGGTAATTTAGGGAGAAGAGGATAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTCTGACCTAGTGAATGCTGTGGTAATTTAGGGAGAAGAGGATAA  1044

seq1  CTTGAAAGGAATACCAGAGATGTGAATTC  1077
      |||||||||||||||||||||||||||||
seq2  CTTGAAAGGAATACCAGAGATGTGAATTC  1073

seq1: chr4_53787828_53788774
seq2: B6Ng01-076I04.g_67_1012

seq1  GAATTCCTACATACCTTTAAGCCCCCAAAGAAGTTCATCAAAAGACTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACATACCTTTAAGCCCCCAAAGAAGTTCATCAAAAGACTTAT  50

seq1  CAACCTAAAGGTAGCTGGGGTTGGTGGTGCTTGCCTTTAATCCCAATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTAAAGGTAGCTGGGGTTGGTGGTGCTTGCCTTTAATCCCAATACT  100

seq1  TGGGAGAAAAAGTCAGATAGAGAGGCTAGCCTTGTCTACATAGTGAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAAAAAGTCAGATAGAGAGGCTAGCCTTGTCTACATAGTGAGTTC  150

seq1  CCAGCCTGGGCTACCTACTGAGACCCTTTTGGAAAAACAAAGGCAACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGGCTACCTACTGAGACCCTTTTGGAAAAACAAAGGCAACACT  200

seq1  CCTGCAAACACAAAGGAACAAATCCAAGACACAGAAGAAGAAGATCAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAACACAAAGGAACAAATCCAAGACACAGAAGAAGAAGATCAAAC  250

seq1  CTTCCAAGAATATAGAGTCTGACCTACTGGGAGTATATGAGAAAGCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGAATATAGAGTCTGACCTACTGGGAGTATATGAGAAAGCACTG  300

seq1  ACTTTCAAACAAGGAGTACCGCTCCTCTTGTAGTGACTAGGACCCTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAAACAAGGAGTACCGCTCCTCTTGTAGTGACTAGGACCCTTTTA  350

seq1  AAAAATGTTATAAGTTGTTTGAAAAACAACTCAAAAAATATATCAGAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTTATAAGTTGTTTGAAAAACAACTCAAAAAATATATCAGAGCC  400

seq1  AAAAAAAAAAATACTGCATACATCTCTAAGCACACCACAATAACATTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAATACTGCATACATCTCTAAGCACACCACAATAACATTAGA  450

seq1  AACTAATAACAAGCCATTGCAATTAACAACAAAAATACTAGGAAGCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATAACAAGCCATTGCAATTAACAACAAAAATACTAGGAAGCTTTA  500

seq1  AAACTACTTAAACACTTAGTAGAAGAGGAAAAACAAACAAAAACAGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACTTAAACACTTAGTAGAAGAGGAAAAACAAACAAAAACAGACTT  550

seq1  TAGAAACTAAAGCAGCCAGATGTCACTACACATTTCTATGACAGAGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACTAAAGCAGCCAGATGTCACTACACATTTCTATGACAGAGACAG  600

seq1  GATAATTGCTCACACATCCCCAGCCTGGGCGTCATTGCAAAACCCTGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTGCTCACACATCCCCAGCCTGGGCGTCATTGCAAAACCCTGTCT  650

seq1  CAAAAAACTGAAATAAAAACTTAACCCATTGATGAATCTGAAAAGGTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACTGAAATAAAAACTTAACCCATTGATGAATCTGAAAAGGTCAA  700

seq1  AATTTGTACAGTAAACTGCCAAAATTTTATTTAAAATGATAGAATCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTACAGTAAACTGCCAAAATTTTATTTAAAATGATAGAATCCATG  750

seq1  ACGGAAAAAGGATATGGCTGCACTGTTCTGTTAGATGTCAAGAACCAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAAAAAGGATATGGCTGCACTGTTCTGTTAGATGTCAAGAACCAGCT  800

seq1  ATTTCGTATGAAGAAGAAACTGGGAATACCATGTATAATGTGTTGTTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGTATGAAGAAGAAACTGGGAATACCATGTATAATGTGTTGTTGGG  850

seq1  AGCAGGGGAGAATATCTGACTGGATGAAGAGACGAATAACATCTTGAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGGAGAATATCTGACTGGATGAAGAGACGAATAACATCTTGAAAC  900

seq1  CAAGAACTGAGGATTGAGAATGGAGTTTACTGGGGGGGGGGGGGGGG  947
      |||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAAGAACTGAGGATTGAGAA-GGAGTTTACTGGGGGGGGGGGGGGGG  946