BAC Information

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BAC

Clone NameB6Ng01-076O05
Chromosome4 (Build37)
Map Location 96,497,541 - 96,681,097
singlet/doubletdoublet
Overlap genenone
Upstream geneHook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076O05.bB6Ng01-076O05.g
ACCDH893020DH893021
length1,1611,069
definitionDH893020|Mus musculus domesticus DNA, BAC clone: B6Ng01-076O05, 5' end.DH893021|Mus musculus domesticus DNA, BAC clone: B6Ng01-076O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,497,541 - 96,498,253)(96,680,031 - 96,681,097)
sequence
gaattcaagaaggtggactccagaaaatcagataaccccattaaaaaatg
gggctcagagctaaacaaagaattctcacctgaggaatacctaatggcca
agaagcacctgaaaaaatgtttaacatccttaatcataagggaaatgcaa
atcaaaacaaccctaagattccacctcatacaagtcagaatggctaagat
caaaaactcaggtgacagcagatgttggcaaggatgtggagaaagaggaa
cacttctccattgttggtgggattgcaagcttgtacaaccactctggaaa
tcagtctggaggttcctcagaaaattggacatagtactactggaggatcc
agcagtacctctcctgggcatatatctagatgttccaaccggtaagaagg
acacatgctctactgtattcataacagccttatttataatagccggaagc
tggaaagaacccagatgtcccgcaacagaggaatggatacataaaatgtg
gtacaattacacaatggagtactactcagctattaaaaagaatgaattta
tgaaattcctaggcaaatggatggacctggagggcatcatcctgagtgag
gtaacccaatcacaaaagaactcacatgatatgaactcactgataagtgg
atattagcccagaaacttagaatacccaagatacaagatacaatctgcaa
aacacatgaaactcaagaaaaacatagaccaaaatgtggacactttgccc
cttcttagaattgggaacaaaacacccatggaaggagttacacagacaaa
gttttgagctgagacgaaaagatggaccatctagagactgccatacccgg
ggatccatcccataatcagcctccaaacgctgacaccattgcatacacta
gcaagattgccctttatatggtgtcttttcacaacaatgaaaccctaacc
tgagcaacagcatagtgaagaaagatattattcatttttgtgaagtaact
tagattgggctctttaaatctaagttttctttcaaagctcaaaattccta
gctaatacaaggagtggaattcttaatcatgtggtctcaactgctagttg
tttataactgtaggaggctgttttctttcacttttgaagcataaaccacg
actccttgatg
gaattcaaagccatccttgtctatataaaagaacatgatatgtatgggaa
acttcaggctacttcaatatggctagaaaaataataatagtgcattttct
tttaactagattttcaaggacttatttcaaaggggcttcaattttgaatc
caaaatggatcagtgacagctaattttgccattatataatgttagaataa
ttaattagaagggtatttaaccatttaggtcatatagcaatggtatgttt
caaatattttctctcttgtatatatttatgtattttagtaagtaataata
agactcctacccatcctgtattttaaagatgaaacaacaattagtcagca
tacccacaggctaccaagtgtttctgtaatgagaatgactataggtgtga
tgactaaattagtgccaggctatttaaaggccaggaaattcaagcatatt
caataaatcacagtgactaaagttaggtaataattgcctggtatgctcat
ttcactatttatcatagaagtaagtaaatatagattaagtaagacattag
aagctaaccaaggtaggaattctttagtgatgagcctgtgacctcaaatc
gtggcttagaattatagcccctaggctaaatgaaaaataatttattaatt
attgactgtcctggagacaagacagaactgctattcagtaactcagctct
tgggtaatgtgtacaaaacaaaatgagatttattcaataaggacaaagat
tctctttttgctattctttgacaaaagtccactcaataagagtaactata
taaatttaaaatttataataaaaacttaatcctcactcctttgtgtagtt
ttaaatatcagaagcagtggctgtgtgttgggatttcaaatctggaagtc
cttttcctagattacatttttttcaaatttttattacattttgtttgctt
gttgtttatcatttaatcctgtgcaggcttatcatgtgcaggacactaac
acggaccaatggtgggagggcagattaatggttttcagagtagactcttt
ctacctccaccgggcctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_96497541_96498253
seq2: B6Ng01-076O05.b_503_1211

seq1  GAAAGAACCCAGATGTCCCGCAACAGAGGAATGGATACATAAAATGTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACCCAGATGTCCCGCAACAGAGGAATGGATACATAAAATGTGGT  50

seq1  ACAATTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG  100

seq1  AAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT  150

seq1  AACCCAATCACAAAAGAACTCACATGATATGAACTCACTGATAAGTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAATCACAAAAGAACTCACATGATATGAACTCACTGATAAGTGGAT  200

seq1  ATTAGCCCAGAAACTTAGAATACCCAAGATACAAGATACAATCTGCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCCAGAAACTTAGAATACCCAAGATACAAGATACAATCTGCAAAA  250

seq1  CACATGAAACTCAAGAAAAACATAGACCAAAATGTGGACACTTTGCCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAAACTCAAGAAAAACATAGACCAAAATGTGGACACTTTGCCCCT  300

seq1  TCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACACAGACAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACACAGACAAAGT  350

seq1  TTTGAGCTGAGACGAAAAGATGGACCATCTAGAGACTGCCATACCCGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCTGAGACGAAAAGATGGACCATCTAGAGACTGCCATACCCGGGG  400

seq1  ATCCATCCCATAATCAGCCTCCAAACGCTGACACCATTGCATACACTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCCATAATCAGCCTCCAAACGCTGACACCATTGCATACACTAGC  450

seq1  AAGATTGCCCTTTATATGGTGTCTTTTCACAACAATGAAACCCTAACCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGCCCTTTATATGGTGTCTTTTCACAACAATGAAACCCTAACCTG  500

seq1  AGCAACAGCATAGTGAAGAAAGATATTATTCATTTTTGTGAAGTAACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGCATAGTGAAGAAAGATATTATTCATTTTTGTGAAGTAACTTA  550

seq1  GATTGGGCTCTTTAAATCTAAGTTTTCTTTCAAAGCTCAAAATTCCTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGCTCTTTAAATCTAAGTTTTCTTTCAAAGCTCAAAATTCCTAGC  600

seq1  TTATTACAAAGGAGTGGAATTCTTAATCATGT-GTCTCAACTGCTAGTTG  649
       || ||| |||||||||||||||||||||||| |||||||||||||||||
seq2  -TAATAC-AAGGAGTGGAATTCTTAATCATGTGGTCTCAACTGCTAGTTG  648

seq1  TTTTATACTGTAGGATGCTGTTTTCTTTACATTTCTG-AGCATAAAACCA  698
      |||   ||||||||| |||||||||||| || || || ||||| ||||||
seq2  TTTATAACTGTAGGAGGCTGTTTTCTTT-CACTTTTGAAGCAT-AAACCA  696

seq1  ACAGACTCCTTGATG  713
         ||||||||||||
seq2  --CGACTCCTTGATG  709

seq1: chr4_96680031_96681097
seq2: B6Ng01-076O05.g_72_1140 (reverse)

seq1  TAAGGCCCGCTGGAG--TGAGAGAGTCTACTCTTGAAAACCA-TCATCTG  47
      ||||||||| |||||   || ||||||||||| ||||||||| | |||||
seq2  TAAGGCCCGGTGGAGGTAGAAAGAGTCTACTC-TGAAAACCATTAATCTG  49

seq1  CCCT-CCACATTTGTCCCGTGTTAGTTGTCCCTGCACATGAATAAGCCTG  96
      |||| ||||  |||  ||||||||| ||| |||||||||| |||||||||
seq2  CCCTCCCACCATTGGTCCGTGTTAG-TGT-CCTGCACATG-ATAAGCCTG  96

seq1  CACAGGAATAAATGAATAAACAAACAAGCAAACAAAATGTAATAAAAATT  146
      ||||||| |||||| |||||| ||||||||||||||||||||||||||||
seq2  CACAGGATTAAATG-ATAAAC-AACAAGCAAACAAAATGTAATAAAAATT  144

seq1  AGAAAAAAATGTAATCTAGG-AAAGGACTTCCAGATTTGACAT-CCAACA  194
       ||||||||||||||||||| ||||||||||||||||||| || ||||||
seq2  TGAAAAAAATGTAATCTAGGAAAAGGACTTCCAGATTTGAAATCCCAACA  194

seq1  CAACAGCCACTGCTTCTGATATTTAAAACTACACAAAGGAGTGAGGATTA  244
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-ACAGCCACTGCTTCTGATATTTAAAACTACACAAAGGAGTGAGGATTA  243

seq1  AGTTTTTATTATAAATTTT-AATTTATATAGTTACTCTTATTGAGTGGAC  293
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTTTTTATTATAAATTTTAAATTTATATAGTTACTCTTATTGAGTGGAC  293

seq1  -TTTGTCAAAGAATAGCAAAAAGAGAATCTTTGTCCTTATTGAATAAATC  342
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCAAAGAATAGCAAAAAGAGAATCTTTGTCCTTATTGAATAAATC  343

seq1  TCATTTTGTTTTGTACACATTACCCAAGAGCTGAGTTACTGAATAGCAGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGTTTTGTACACATTACCCAAGAGCTGAGTTACTGAATAGCAGT  393

seq1  TCTGTCTTGTCTCCAGGACAGTCAATAATTAATAAATTATTTTTCATTTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTGTCTCCAGGACAGTCAATAATTAATAAATTATTTTTCATTTA  443

seq1  GCCTAGGGGCTATAATTCTAAGCCACGATTTGAGGTCACAGGCTCATCAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGGGGCTATAATTCTAAGCCACGATTTGAGGTCACAGGCTCATCAC  493

seq1  T-AAGAATTCCTACCTTGGTTAGCTTCTAATGTCTTACTTAATCTATATT  541
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATTCCTACCTTGGTTAGCTTCTAATGTCTTACTTAATCTATATT  543

seq1  TACTTACTTCTATGATAAATAGTGAAATGAGCATACCAGGCAATTATTAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTTCTATGATAAATAGTGAAATGAGCATACCAGGCAATTATTAC  593

seq1  CTAACTTTAGTCACTGTGATTTATTGAATATGCTTGAATTTCCTGGCCTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTTAGTCACTGTGATTTATTGAATATGCTTGAATTTCCTGGCCTT  643

seq1  TAAATAGCCTGGCACTAATTTAGTCATCACACCTATAGTCATTCTCATTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGCCTGGCACTAATTTAGTCATCACACCTATAGTCATTCTCATTA  693

seq1  CAGAAACACTTGGTAGCCTGTGGGTATGCTGACTAATTGTTGTTTCATCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACACTTGGTAGCCTGTGGGTATGCTGACTAATTGTTGTTTCATCT  743

seq1  TTAAAATACAGGATGGGTAGGAGTCTTATTATTACTTACTAAAATACATA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATACAGGATGGGTAGGAGTCTTATTATTACTTACTAAAATACATA  793

seq1  AATATATACAAGAGAGAAAATATTTGAAACATACCATTGCTATATGACCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATACAAGAGAGAAAATATTTGAAACATACCATTGCTATATGACCT  843

seq1  AAATGGTTAAATACCCTTCTAATTAATTATTCTAACATTATATAATGGCA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTTAAATACCCTTCTAATTAATTATTCTAACATTATATAATGGCA  893

seq1  AAATTAGCTGTCACTGATCCATTTTGGATTCAAAATTGAAGCCCCTTTGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGCTGTCACTGATCCATTTTGGATTCAAAATTGAAGCCCCTTTGA  943

seq1  AATAAGTCCTTGAAAATCTAGTTAAAAGAAAATGCACTATTATTATTTTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTCCTTGAAAATCTAGTTAAAAGAAAATGCACTATTATTATTTTT  993

seq1  CTAGCCATATTGAAGTAGCCTGAAGTTTCCCATACATATCATGTTCTTTT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCATATTGAAGTAGCCTGAAGTTTCCCATACATATCATGTTCTTTT  1043

seq1  ATATAGACAAGGATGGCTTTGAATTC  1067
      ||||||||||||||||||||||||||
seq2  ATATAGACAAGGATGGCTTTGAATTC  1069