BAC Information

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BAC

Clone NameB6Ng01-077B08
Chromosome4 (Build37)
Map Location 146,805,460 - 146,806,565
singlet/doubletsinglet
Overlap geneLOC627701
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588
Downstream geneOTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077B08.bB6Ng01-077B08.g
ACCDH893151DH893152
length1,2651,100
definitionDH893151|Mus musculus domesticus DNA, BAC clone: B6Ng01-077B08, 5' end.DH893152|Mus musculus domesticus DNA, BAC clone: B6Ng01-077B08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaatggagcaactgtggaaggctgagaaacttcaaaagatatg
ttcaaagtccttagtgatcagaaaaatataaatcaaagcaacactgagat
tccaccttccaccaatcagaatggctaagatcaaaaactcgggtgacagc
acatgctgaacaggatgtggagaaagaggaccaatcctccattgcttgtg
gaattgcaaactggtcaactattctggaaatcaatctggaaattcctcag
aaaattggaaatagatataccttaaaacccagctataccactcttgggca
tgtacacaaaagatgccccaccatgacacagaggcttgtgttccactatg
ttcagagtggccttatttgtgatagccaggagctggaaacaacccagatg
ccccacaatggaagaatcgatactgaaacatggttcattcacacaatgga
atattattcatctattaagaacaatgacatcaggagctttggaggaaaat
ggactgaactagaaaattccatcctgagtgaggtaactcagacccaaaaa
ggacatgcatagtatgtacacactaataaatggatataagcccaaaaaag
tatataatacaatgtaaatgactaaaaagggttaaaagctcaaggaacca
agtgagaatgtcttaatcccagttgggagagagaagaaagcagtcatggg
ggaagaaggagggagggacttgagtgggagcagggacagagaggggaagg
agaaacatgatcaggcattatgagggatgggggggaggacagaagcccga
gaaccagtaaaaaaatgggaaatagacagcctcagaggtaggctatagag
gtccatctcacatgttccaaagacctaggaggtgagagactcccaggact
caaagggagagaccttggataagtgctctacagtggagagggggaacttg
tagagtccacctccagtgagggacaggcatcaagtggagtgatggagttg
caatcctatacacaaacctctgatccagaattcttcctgtttgagcatcc
tccaggacaaaactgcgaagccactgaagagaaatgaggtcatggacagg
ccaattatgattctatcagggagctaagcagtgaaccgttactcatacgt
gtatgcttatgacagactgcatgcttgccctcttaagggttcagcaacag
gaatccaatgcatctagacctacacatgaatggaccagtaccctggtggt
aaatctcggaaggta
gaattctcatgtgcaaattctgaaaacatcaaagcttctgggtgattctt
tctgaaaccctcaaccctgccaacactgctttaacatttatggtcctctc
agggtcttaggcccagagactataagaacaatctctagttcctaaagggc
aagaaagcactgttaactttctagagtttctctgaacttgtagacctggt
tgataaagattctagttaccatgtacaaaggaaaatccaaagaagcagtg
agaaattgtattctggggcttaggcacctctgcatccatttgcttatgtg
catcattacactaaatgtaaggattccagccagagttctggaagtttagg
gataccacagtctgactccaagacatggcctctgaataggcatctgcaca
agctggttcagccatggcactgggagcaaatgtgcagaatgcatggctga
tatgtccaggcttcctcttctccagaaatcattttatctagggagccaga
aagccccatggaagacctgaagcacaggcaggtatcctccacctgtccct
gacaagcatccccaccacatttctgtttgaaactctcatctagttttttc
tgtactttgtggcaccaaagtgcatggaaactcacctcctagaatctaaa
tggctgatacttcttggtatttcatgtgacaaacaccaccttcttcctgg
ccaaagaacagacattgtgagccagtggtaagccttccatctttcatctc
cttccttgttttgtagtcttgcccagtgaccgtattgcacaacttttgta
cataaatgttatctgattcttagtcagtccttgagagtctgggagaggtg
tctaggactttaccttaagtagagttggtgttataagactgagatttcct
cgctgaagggaagataggtgtaaggaagtggaaggcatgtgcaggacctg
tgatactttggtgatttgcagaggatgggtggagtcactagtgcatctgg
tgtctgttcattgcttaggccgtcctccagtcacagccatgggtgaagct
gacaagaagagtgaaggttggaatctagtttccgatatggatggtacaag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146805460_146806565
seq2: B6Ng01-077B08.g_66_1165

seq1  GAATTTTCATGTGCAAATTCTGAAAACATCAAAGCTTTTGGTTGATTCTT  50
      ||||| ||||||||||||||||||||||||||||||| ||| ||||||||
seq2  GAATTCTCATGTGCAAATTCTGAAAACATCAAAGCTTCTGGGTGATTCTT  50

seq1  TCTGAAACCCTCAACCCTGCCAACACCGCTTTAACATTTATGGTCCTCTA  100
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  TCTGAAACCCTCAACCCTGCCAACACTGCTTTAACATTTATGGTCCTCTC  100

seq1  AGGGTCTTAGGCCCAGAGACTATATGAACAATCTCTAGCTCCTAAAGGGC  150
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  AGGGTCTTAGGCCCAGAGACTATAAGAACAATCTCTAGTTCCTAAAGGGC  150

seq1  AAGAAAGCACTGTTAACATTCTAGAGTTTCTCTGAACTTCTAGACCTGGT  200
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  AAGAAAGCACTGTTAACTTTCTAGAGTTTCTCTGAACTTGTAGACCTGGT  200

seq1  TGATAAAGATTCTAGTTACCGCGCACAAAGGAAAATCCAGAGAAGCAGTG  250
      ||||||||||||||||||||  | ||||||||||||||| ||||||||||
seq2  TGATAAAGATTCTAGTTACCATGTACAAAGGAAAATCCAAAGAAGCAGTG  250

seq1  AGAAATTGTATTCTGGGGCTTAGGCACCTCTGCATCCATTTGCTTATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGTATTCTGGGGCTTAGGCACCTCTGCATCCATTTGCTTATGTG  300

seq1  CATCATTACACTAAATGTAAGGATTCCAGCCAGAGTTCTGGAAGTTTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTACACTAAATGTAAGGATTCCAGCCAGAGTTCTGGAAGTTTAGG  350

seq1  GATACCACAGTCTGACTCCAAGACATGGCCTCTGAATAGGCATCTGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCACAGTCTGACTCCAAGACATGGCCTCTGAATAGGCATCTGCACA  400

seq1  AGCTGGTTCAGCCATGGCGCTGGGAGCAAATGTGCAGAATGCATGGCTGA  450
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGCTGGTTCAGCCATGGCACTGGGAGCAAATGTGCAGAATGCATGGCTGA  450

seq1  TATGTCCAGGCTTCCTCTTCTCCAGAAATCATTTTATCTAGGGAGCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCAGGCTTCCTCTTCTCCAGAAATCATTTTATCTAGGGAGCCAGA  500

seq1  AAGCCCCATGGAAGACCTGAAGCACAGGCAGGTATCCTCCACCTGTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCATGGAAGACCTGAAGCACAGGCAGGTATCCTCCACCTGTCCCT  550

seq1  GACAAGCATCCCCACCACATTTCTGTTTGAAACTCTCATCTAGTTTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCATCCCCACCACATTTCTGTTTGAAACTCTCATCTAGTTTTTTC  600

seq1  TGTACTTTGTGGCACCAAAGTGCATGGAAACTCACCTCCTAGAATCTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTGTGGCACCAAAGTGCATGGAAACTCACCTCCTAGAATCTAAA  650

seq1  TGGCTGATACTTCTTGGTATTTCATGTGACAAACACCACCTTCTTCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGATACTTCTTGGTATTTCATGTGACAAACACCACCTTCTTCCTGG  700

seq1  CCAAAGAACAGACATTGTGAGCCAGTGTTAAGCCTTCCATCTTTGATCTC  750
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  CCAAAGAACAGACATTGTGAGCCAGTGGTAAGCCTTCCATCTTTCATCTC  750

seq1  CTTCCTTGTTTTGTAGTCTTGCCCAGTGACCGTATTGCACAACTTTTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGTTTTGTAGTCTTGCCCAGTGACCGTATTGCACAACTTTTGTA  800

seq1  CATAAATGTTATCTGATTCTTAGTCAGTCCTTGAGAGTCTGGGAGAGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATGTTATCTGATTCTTAGTCAGTCCTTGAGAGTCTGGGAGAGGTG  850

seq1  TCTAGGACTTTACCTTAAGTAGAGTTGGTGTTATAAGACTGAGATTTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGACTTTACCTTAAGTAGAGTTGGTGTTATAAGACTGAGATTTCCT  900

seq1  CGCTGAAGGGAAGATAGGTGTAAGGGAAGTGGAAGGCATGTGCAGGACCT  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CGCTGAAGGGAAGATAGGTGTAA-GGAAGTGGAAGGCATGTGCAGGACCT  949

seq1  GTGATACTTTGGTGATTTGCAGAGGATGGGTGGAGTCACTAGTGCATCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACTTTGGTGATTTGCAGAGGATGGGTGGAGTCACTAGTGCATCTG  999

seq1  GTGTCTGTTCATTGCTTAGGGCAGTCCTCCAGTCACAGCAATGGGTAGAG  1050
      |||||||||||||||||| ||| |||||||||||||||| ||||||  ||
seq2  GTGTCTGTTCATTGCTTA-GGCCGTCCTCCAGTCACAGCCATGGGTGAAG  1048

seq1  CTGACAAGAAGGAGTTGAGGTGGGAATCTAAGTTTCCCAGATATGGATGG  1100
      |||||||||| ||||  |||| ||||||| |||||||  |||||||||||
seq2  CTGACAAGAA-GAGTGAAGGTTGGAATCT-AGTTTCC--GATATGGATGG  1094

seq1  GACAAG  1106
       |||||
seq2  TACAAG  1100