BAC Information

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BAC

Clone NameB6Ng01-077D04
Chromosome4 (Build37)
Map Location 136,584,261 - 136,726,707
singlet/doubletdoublet
Overlap geneZbtb40
Upstream geneRpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8
Downstream geneWnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558, Eif4g3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077D04.bB6Ng01-077D04.g
ACCDH893237DH893238
length954902
definitionDH893237|Mus musculus domesticus DNA, BAC clone: B6Ng01-077D04, 5' end.DH893238|Mus musculus domesticus DNA, BAC clone: B6Ng01-077D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,725,735 - 136,726,707)(136,584,261 - 136,585,159)
sequence
gaattcacttcacagtcagccccagagagggtgtctcctgcagagaacag
ccacacagaagggaagctgcaatgttagaaataacagtggtccagccttg
gcatagcaggtctcaggaggtgggtcttcatctgccgcaaaaccgtggct
gagcacaggggaaggggtctggggagacagctggggtaggagtgaggctg
tctgatgcctggacttggccatgggatcatgggcttcattttcaggtgaa
gaaacacaaaatgaaccatctctcaattcactttttttttttctatttta
gtaaaagttctcgtcgtgtgggtgaagtcttgctgtattggtccgaactc
ccagggctcaaatgacccttctatctctgcctcctgagcatctggaactg
tagatacatatcacaatgccagcacaaatctacttttattagtttccaaa
agggttgtaagtctctccttacttccccagttggagtctgggtatcactg
tcctctctagctgagctgtagcatcctctcgaccacactcatttacccat
ccatccatccatccatccatccatccatccatccatctatccatccacca
ctcatccatccatccatccattcatccaccactcatccactcatccatcc
atccatccatccatccatctatccatccatccatccatccatccatctat
cacccatccaccatacatccatctaccattcatctgtccatcccaccatc
catccatccatccatccttccatccaccccatctatccattcatccatcc
atttcattcatgctttttgtgctcactcattcatcatcatctatttattc
acccacttatactttttcacacaggctgcaggcattcattttcactatgt
ccataaattactcatccatcactaatctaatccctgggtaattcatcatt
catt
gaattcaacacaaagtagaaaactaggccagctttctaaaaggggcacaa
agaatatttatttatttaaattcctaccctaactccttccaacaaggatt
tggaagtcttgaggatccttatgttacaaagaacacaggagaaagctgga
gaaagcaagcaagagctgaggcatagttggggggaaggtgacatctcttt
aaagaccatggcaataacactgcaggttacacgggccatatacactgtta
aataaaaaagttctgccctccacagcctcgggcaggttccctagcaaggc
actgactggtgaaggcatctgctgcagtggcattgagcggagactagatc
tcctgtccttgctttcccaggagtctcggggaagcagcccacacaccatc
attcgctcagcacactgctaggtactgactgtgggagcccagtggaatat
aaatcaagacccatgtccatgggagcacctagttcacccagcactggttc
aactgcaaccacaactctcacatgggctcagtctgaggccagaggaagga
gagggagacaacggatggcgcggccctgctgagcagtggggaaggcaaag
ggttggaggagtacttgccacttagataggactctcaggtgagggcaaag
gtcaagcgctctaggcagaggagacacttgagctttattttcttgaaggg
accccatgacactgcaccaggcattggtgacagaggtgtcaccaccaagt
gacagcagtgtggtgggtcacacactgagcagaggaaagggcacctgcat
tctgaggtcagagcattaggagaggtcggatgggcagatccaggagaggg
cccagcagcaggacagatgcccagacattcctaccctcactgtccatcag
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_136725735_136726707
seq2: B6Ng01-077D04.b_49_1002 (reverse)

seq1  AATGAATGATGTAAGCAATGAATAAATGAATTAACCAGTGAATAGATTAG  50
                      |||||||  |||||||| |||| || ||||||||
seq2  ----------------AATGAAT-GATGAATTACCCAGGGATTAGATTAG  33

seq1  TGAATGAATGAGTAATGAATGGACATAGTGAAAAATGAATGCCTGCTGCC  100
      || ||| |||||||||  |||||||||||| ||||||||||||||| |||
seq2  TG-ATGGATGAGTAATTTATGGACATAGTG-AAAATGAATGCCTGCAGCC  81

seq1  TGTGTGAAAAAAGTATAAGTGGGTGAATAGATAGATGATGGATGAATGAG  150
      |||||| |||||||||||||||||||||| ||||||||| ||||||||||
seq2  TGTGTG-AAAAAGTATAAGTGGGTGAATAAATAGATGAT-GATGAATGAG  129

seq1  TGAGCACAAAAAGCATGAATG-AATGGATGGATGAATGGATAGAT-GGGT  198
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  TGAGCACAAAAAGCATGAATGAAATGGATGGATGAATGGATAGATGGGGT  179

seq1  GGATGGAAGGATGGATGGATGGATGGATGGTGGGATGGACAGATGAATGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAAGGATGGATGGATGGATGGATGGTGGGATGGACAGATGAATGG  229

seq1  TAGATGGATGTATGGTGGATGGGTGATAGATGGATGGATGGATGGATGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGATGTATGGTGGATGGGTGATAGATGGATGGATGGATGGATGGA  279

seq1  TGGATAGATGGATGGATGGATGGATGGATGGATGAGTGGATGAGTGGTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGATGGATGGATGGATGGATGGATGGATGAGTGGATGAGTGGTGG  329

seq1  ATGAATGGATGGATGGATGGATGAGTGGTGGATGGATAGATGGATGGATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGATGGATGGATGGATGAGTGGTGGATGGATAGATGGATGGATG  379

seq1  GATGGATGGATGGATGGATGGATGGATGGGTAAATGAGTGTGGTCGAGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATGGATGGATGGATGGATGGATGGGTAAATGAGTGTGGTCGAGAG  429

seq1  GATGCTACAGCTCAGCTAGAGAGGACAGTGATACCCAGACTCCAACTGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTACAGCTCAGCTAGAGAGGACAGTGATACCCAGACTCCAACTGGG  479

seq1  GAAGTAAGGAGAGACTTACAACCCTTTTGGAAACTAATAAAAGTAGATTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAGGAGAGACTTACAACCCTTTTGGAAACTAATAAAAGTAGATTT  529

seq1  GTGCTGGCATTGTGATATGTATCTACAGTTCCAGATGCTCAGGAGGCAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGCATTGTGATATGTATCTACAGTTCCAGATGCTCAGGAGGCAGA  579

seq1  GATAGAAGGGTCATTTGAGCCCTGGGAGTTCGGACCAATACAGCAAGACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAGGGTCATTTGAGCCCTGGGAGTTCGGACCAATACAGCAAGACT  629

seq1  TCACCCACACGACGAGAACTTTTACTAAAATAGAAAAAAAAAAAGTGAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCACACGACGAGAACTTTTACTAAAATAGAAAAAAAAAAAGTGAAT  679

seq1  TGAGAGATGGTTCATTTTGTGTTTCTTCACCTGAAAATGAAGCCCATGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATGGTTCATTTTGTGTTTCTTCACCTGAAAATGAAGCCCATGAT  729

seq1  CCCATGGCCAAGTCCAGGCATCAGACAGCCTCACTCCTACCCCAGCTGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGCCAAGTCCAGGCATCAGACAGCCTCACTCCTACCCCAGCTGTC  779

seq1  TCCCCAGACCCCTTCCCCTGTGCTCAGCCACGGTTTTGCGGCAGATGAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGACCCCTTCCCCTGTGCTCAGCCACGGTTTTGCGGCAGATGAAG  829

seq1  ACCCACCTCCTGAGACCTGCTATGCCAAGGCTGGACCACTGTTATTTCTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCTCCTGAGACCTGCTATGCCAAGGCTGGACCACTGTTATTTCTA  879

seq1  ACATTGCAGCTTCCCTTCTGTGTGGCTGTTCTCTGCAGGAGACACCCTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCAGCTTCCCTTCTGTGTGGCTGTTCTCTGCAGGAGACACCCTCT  929

seq1  CTGGGGCTGACTGTGAAGTGAATTC  973
      |||||||||||||||||||||||||
seq2  CTGGGGCTGACTGTGAAGTGAATTC  954

seq1: chr4_136584261_136585159
seq2: B6Ng01-077D04.g_68_969

seq1  GAATTCAACACAAAGTAGAAAACTAGGCCAGCTTTCTAAAAGGGGCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACAAAGTAGAAAACTAGGCCAGCTTTCTAAAAGGGGCACAA  50

seq1  AGAATATTTATTTATTTAAATTCCTACCCTAACTCCTTCCAACAAGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTTATTTATTTAAATTCCTACCCTAACTCCTTCCAACAAGGATT  100

seq1  TGGAAGTCTTGAGGATCCTTATGTTACAAAGAACACAGGAGAAAGCTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTCTTGAGGATCCTTATGTTACAAAGAACACAGGAGAAAGCTGGA  150

seq1  GAAAGCAAGCAAGAGCTGAGGCATAGTTGGGGGGAAGGTGACATCTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAGCAAGAGCTGAGGCATAGTTGGGGGGAAGGTGACATCTCTTT  200

seq1  AAAGACCATGGCAATAACACTGCAGGTTACACGGGCCATATACACTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCATGGCAATAACACTGCAGGTTACACGGGCCATATACACTGTTA  250

seq1  AATAAAAAAGTTCTGCCCTCCACAGCCTCGGGCAGGTTCCCTAGCAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAAGTTCTGCCCTCCACAGCCTCGGGCAGGTTCCCTAGCAAGGC  300

seq1  ACTGACTGGTGAAGGCATCTGCTGCAGTGGCATTGAGCGGAGACTAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTGGTGAAGGCATCTGCTGCAGTGGCATTGAGCGGAGACTAGATC  350

seq1  TCCTGTCCTTGCTTTCCCAGGAGTCTCGGGGAAGCAGCCCACACACCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCCTTGCTTTCCCAGGAGTCTCGGGGAAGCAGCCCACACACCATC  400

seq1  ATTCGCTCAGCACACTGCTAGGTACTGACTGTGGGAGCCCAGTGGAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGCTCAGCACACTGCTAGGTACTGACTGTGGGAGCCCAGTGGAATAT  450

seq1  AAATCAAGACCCATGTCCATGGGAGCACCTAGTTCACCCAGCACTGGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGACCCATGTCCATGGGAGCACCTAGTTCACCCAGCACTGGTTC  500

seq1  AACTGCAACCACAACTCTCACATGGGCTCAGTCTGAGGCCAGAGGAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAACCACAACTCTCACATGGGCTCAGTCTGAGGCCAGAGGAAGGA  550

seq1  GAGGGAGACAACGGATGGCGCGGCCCTGCTGAGCAGTGGGGAAGGCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGACAACGGATGGCGCGGCCCTGCTGAGCAGTGGGGAAGGCAAAG  600

seq1  GGTTGGAGGAGTACTTGCCACTTAGATAGGACTCTCAGGTGAGGGCAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAGGAGTACTTGCCACTTAGATAGGACTCTCAGGTGAGGGCAAAG  650

seq1  GTCAAGCGCTCTAGGCAGAGGAGACACTTGAGCTT--ATTTCTTGAAGGG  698
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  GTCAAGCGCTCTAGGCAGAGGAGACACTTGAGCTTTATTTTCTTGAAGGG  700

seq1  ACCCCATGACACTGCACCAGGCATTGGTGACAGAGGTGTCACCACCAAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATGACACTGCACCAGGCATTGGTGACAGAGGTGTCACCACCAAGT  750

seq1  GACAGCAGTGTGGTGGGTCACACACTGAGCAGAGGAAAGGGCACCTGCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGTGTGGTGGGTCACACACTGAGCAGAGGAAAGGGCACCTGCAT  800

seq1  TCTGAGGTCAGAGCATTAGGAGAGGTCGGATGGGCAGATCCAGGAGAGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTCAGAGCATTAGGAGAGGTCGGATGGGCAGATCCAGGAGAGGG  850

seq1  CCCAGCAGCAGGACAGATGCCCAGACA-TCCTACCCACACTGTCCATCAG  897
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  CCCAGCAGCAGGACAGATGCCCAGACATTCCTACCCTCACTGTCCATCAG  900

seq1  GA  899
      ||
seq2  GA  902