BAC Information

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BAC

Clone NameB6Ng01-077D21
Chromosome4 (Build37)
Map Location 106,831,295 - 106,976,385
singlet/doubletdoublet
Overlap gene2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1
Upstream geneUsp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2
Downstream geneYipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077D21.bB6Ng01-077D21.g
ACCDH893271DH893272
length9891,110
definitionDH893271|Mus musculus domesticus DNA, BAC clone: B6Ng01-077D21, 5' end.DH893272|Mus musculus domesticus DNA, BAC clone: B6Ng01-077D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,975,400 - 106,976,385)(106,831,295 - 106,832,408)
sequence
gaattcagggaacagcccaggacagagggcaaggggcaggtgagttccca
gatgtggaaactgggtgtaaggggaagctgctgaggtcatcaagaaccag
agctggagggtgtcctgtctcctacctgcaggtacacacatgcctcaaag
tgttggttagttttggggaggatttccaaatagggttatcaagatccatt
acaaagacatcctatagcccttcagaaactcccaggcctttggcacgcca
aaggatgctttgggcataaacacagggctcattttagagctacccatcgg
aagtccaggaaggtttcttacagataatctagtgtgacctcttgagtgtt
tcagacgcaaaacgaaagtcatacagaaccgctcagagtcccatagcgag
ttctcagtggagtttgtgctttgggcctactttctactgttgcatgcaac
actggggcctcagattcacacacagcatgcacatcctcctgaacaccaca
cacacgcacagaggaaactcttgatctgcagtctctccaagtatccagag
gaggtgtcacctggtaatgataaaaggggcttttctgcagagagagcctg
ggccagaggctcacacgctggcctgggggggggggggtcatgagcatgag
tctgtttctcctgtttatagaacactgcagtccttacctgacaccctcat
gatgtggtctgtggcctgtggacactagcagtgtgccagccataagcacc
cacacttcctctttctgctgccaggtggacttttgccctggttgcaacat
caccatgtcggccacactctagatggataaacagatgcgcctgttctttt
gggggcctgttgagtcttttgcccattaaaagcaaaatctcagacagcta
acatttaaaactgggtcctaactggaaaacccatttttctaccttaacga
gtggttctctagggtcattacagtcagtgaccagacact
gaattcattcacttttgtgattcccagaaactcacttccaatatgtattt
ctagtctaacagtctcatttgagctggacatttccattaaaatagtttta
aagaattcaaaatgcaggctgggtgtggtggcacacacctttaatttcag
tatttgggaggcagaggcaggaggatctccgtgaatttgaggccagcctt
tgtctacaaagtaaattgcaggacaccagtgctgttatacagagaaaccc
tgtctcaaaaaaatcaaaatgataaactcttaccagtaaatgaacaaaga
acacaaatacttgagagagagagagagagagagagagagagagaaagaga
gaagaaaagagaaaggaaaaggacaaatggctgacaagcctattacaaac
acttagtctacttagtaaatgaaaataagaatttatttctctgacctatc
tattttttggcctattggattactgagagtttaagaaagatgtaggcatg
caaatgaagacaacattcctaggatgtaagattcccacccacatggagac
aggaagcgcacagagcagtctagatgaaggccttgggtaggctgctcgag
gctgggctgcccttcctgaagaagcatcgttgctggggaaaatagaagca
gagctggaaggcaagcagagcatggagaatgccgccaactcctggccctt
ccctctcttggacaggcacattctgcactcaggttctgtagcagtgaggt
gtgaggcagcacacacaacagcacggccctgctggcacagagactgctca
gcacatagaaaataaagaggcaaataattaaataagtaattacaaaccaa
gataagagccgggagggaaaccagttaaaaatacagaagtagcagcccgg
ctcggtgtcacttatgccaagagaaaggaaaataatcaacgggtttcaat
cacaggtctggagatgagaccgagacagacactggattcggacagattaa
aatcactgttgtcctgaaaagaagaagtgagagtgtgggagagtccttct
ggtagagagatgagatgatagtaggaggtcagaagaggccactgtgtctc
agccagcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_106975400_106976385
seq2: B6Ng01-077D21.b_48_1036 (reverse)

seq1  AGTGGCTGGTCACTGGACTGTAATGACCCTAGAGAACCACTCG-TCAGGT  49
      |||| ||||||||| |||||||||||||||||||||||||||| | ||||
seq2  AGTGTCTGGTCACT-GACTGTAATGACCCTAGAGAACCACTCGTTAAGGT  49

seq1  AAGAAAATGGG-TTTCCAGTTAGGA-CCAGTTTTAAATGTTAGCTGTCTG  97
      |  |||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  AGAAAAATGGGTTTTCCAGTTAGGACCCAGTTTTAAATGTTAGCTGTCTG  99

seq1  GAATTTTGCTTTTAATGGGCAAAAGACTCAACAGGCCCCCAAAAGGACAG  147
        ||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGATTTTGCTTTTAATGGGCAAAAGACTCAACAGGCCCCCAAAAGAACAG  149

seq1  GCGCATCTGTTTATCCATCTAGAGTGTGGCCGACATGGTGATGTTTGCAA  197
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCGCATCTGTTTATCCATCTAGAGTGTGGCCGACATGGTGATG-TTGCAA  198

seq1  CCAGGGC-AAAGTCCACCTGGCAGCAGAAAGAGGAAGTGTGGGTGCTTAT  246
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCAAAAGTCCACCTGGCAGCAGAAAGAGGAAGTGTGGGTGCTTAT  248

seq1  GGCTGGCACACTGCTAGTGTCCACAGGCCACAGACCACATCATGAGGGTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCACACTGCTAGTGTCCACAGGCCACAGACCACATCATGAGGGTG  298

seq1  TCAGGTAAGGACTGCAGTGTTCTATAAACAGGAG-AACAGACTCATGCTC  345
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCAGGTAAGGACTGCAGTGTTCTATAAACAGGAGAAACAGACTCATGCTC  348

seq1  ATGACCCCCCCCCCCCCAGGCCAGCGTGTGAGCCTCTGGCCCAGGCTCTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCCCCCCCCCCCAGGCCAGCGTGTGAGCCTCTGGCCCAGGCTCTC  398

seq1  TCTGCAGAAAAGCCCCTTTTATCATTACCAGGTGACACCTCCTCTGGATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGAAAAGCCCCTTTTATCATTACCAGGTGACACCTCCTCTGGATA  448

seq1  CTTGGAGAGACTGCAGATCAAGAGTTTCCTCTGTGCGTGTGTGTGGTGTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGAGACTGCAGATCAAGAGTTTCCTCTGTGCGTGTGTGTGGTGTT  498

seq1  CAGGAGGATGTGCATGCTGTGTGTGAATCTGAGGCCCCAGTGTTGCATGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGATGTGCATGCTGTGTGTGAATCTGAGGCCCCAGTGTTGCATGC  548

seq1  AACAGTAGAAAGTAGGCCCAAAGCACAAACTCCACTGAGAACTCGCTATG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAGAAAGTAGGCCCAAAGCACAAACTCCACTGAGAACTCGCTATG  598

seq1  GGACTCTGAGCGGTTCTGTATGACTTTCGTTTTGCGTCTGAAACACTCAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTGAGCGGTTCTGTATGACTTTCGTTTTGCGTCTGAAACACTCAA  648

seq1  GAGGTCACACTAGATTATCTGTAAGAAACCTTCCTGGACTTCCGATGGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCACACTAGATTATCTGTAAGAAACCTTCCTGGACTTCCGATGGGT  698

seq1  AGCTCTAAAATGAGCCCTGTGTTTATGCCCAAAGCATCCTTTGGCGTGCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAAAATGAGCCCTGTGTTTATGCCCAAAGCATCCTTTGGCGTGCC  748

seq1  AAAGGCCTGGGAGTTTCTGAAGGGCTATAGGATGTCTTTGTAATGGATCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCTGGGAGTTTCTGAAGGGCTATAGGATGTCTTTGTAATGGATCT  798

seq1  TGATAACCCTATTTGGAAATCCTCCCCAAAACTAACCAACACTTTGAGGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACCCTATTTGGAAATCCTCCCCAAAACTAACCAACACTTTGAGGC  848

seq1  ATGTGTGTACCTGCAGGTAGGAGACAGGACACCCTCCAGCTCTGGTTCTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTACCTGCAGGTAGGAGACAGGACACCCTCCAGCTCTGGTTCTT  898

seq1  GATGACCTCAGCAGCTTCCCCTTACACCCAGTTTCCACATCTGGGAACTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCTCAGCAGCTTCCCCTTACACCCAGTTTCCACATCTGGGAACTC  948

seq1  ACCTGCCCCTTGCCCTCTGTCCTGGGCTGTTCCCTGAATTC  986
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCCCTTGCCCTCTGTCCTGGGCTGTTCCCTGAATTC  989

seq1: chr4_106831295_106832408
seq2: B6Ng01-077D21.g_68_1177

seq1  GAATTCATTCACTTTTGTGATTCCCAGAAACTCACTTCCAATATGTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCACTTTTGTGATTCCCAGAAACTCACTTCCAATATGTATTT  50

seq1  CTAGTCTAACAGTCTCATTTGAGCTGGACATTTCCATTAAAATAGTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTAACAGTCTCATTTGAGCTGGACATTTCCATTAAAATAGTTTTA  100

seq1  AAGAATTCAAAATGCAGGCTGGGTGTGGTGGCACACACCTTTAATTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCAAAATGCAGGCTGGGTGTGGTGGCACACACCTTTAATTTCAG  150

seq1  TATTTGGGAGGCAGAGGCAGGAGGATCTCCGTGAATTTGAGGCCAGCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGGAGGCAGAGGCAGGAGGATCTCCGTGAATTTGAGGCCAGCCTT  200

seq1  TGTCTACAAAGTAAATTGCAGGACACCAGTGCTGTTATACAGAGAAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACAAAGTAAATTGCAGGACACCAGTGCTGTTATACAGAGAAACCC  250

seq1  TGTCTCAAAAAAATCAAAATGATAAACTCTTACCAGTAAATGAACAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAAAAAATCAAAATGATAAACTCTTACCAGTAAATGAACAAAGA  300

seq1  ACACAAATACTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATACTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGA  350

seq1  GAAGAAAAGAGAAAGGAAAAGGACAAATGGCTGACAAGCCTATTACAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAGAGAAAGGAAAAGGACAAATGGCTGACAAGCCTATTACAAAC  400

seq1  ACTTAGTCTACTTAGTAAATGAAAATAAGAATTTATTTCTCTGACCTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTCTACTTAGTAAATGAAAATAAGAATTTATTTCTCTGACCTATC  450

seq1  TATTTTTTGGCCTATTGGATTACTGAGAGTTTAAGAAAGATGTAGGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGGCCTATTGGATTACTGAGAGTTTAAGAAAGATGTAGGCATG  500

seq1  CAAATGAAGACAACATTCCTAGGATGTAAGATTCCCACCCACATGGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAAGACAACATTCCTAGGATGTAAGATTCCCACCCACATGGAGAC  550

seq1  AGGAAGCGCACAGAGCAGTCTAGATGAAGGCCTTGGGTAGGCTGCTCGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCGCACAGAGCAGTCTAGATGAAGGCCTTGGGTAGGCTGCTCGAG  600

seq1  GCTGGGCTGCCCTTCCTGAAGAAGCATCGTTGCTGGGGAAAATAGAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCTGCCCTTCCTGAAGAAGCATCGTTGCTGGGGAAAATAGAAGCA  650

seq1  GAGCTGGAAGGCAAGCAGAGCATGGAGAATGCCGCCAACTCCTGGCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGAAGGCAAGCAGAGCATGGAGAATGCCGCCAACTCCTGGCCCTT  700

seq1  CCCTCTCTTGGACAGGCACATTCTGCACTCAGGTTCTGTAGCAGTGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTTGGACAGGCACATTCTGCACTCAGGTTCTGTAGCAGTGAGGT  750

seq1  GTGAGGCAGCACACACAACAGCACGGCCCTGCTGGCACAGAGACTGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCAGCACACACAACAGCACGGCCCTGCTGGCACAGAGACTGCTCA  800

seq1  GCACATAGAAAATAAAGAGGCAAATAATTAAATAAGTAATTACAAACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAGAAAATAAAGAGGCAAATAATTAAATAAGTAATTACAAACCAA  850

seq1  GATAAGAGCCGGGAGGGAAACCAGTTAAAAATACAGAAGTAGCAG-CCGG  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GATAAGAGCCGGGAGGGAAACCAGTTAAAAATACAGAAGTAGCAGCCCGG  900

seq1  CTCGGTGTCACTTATGCCAAGAGAAAGGAAAATAATCAACGGTTTCAAAT  949
      |||||||||||||||||||||||||||||||||||||||||| ||  |||
seq2  CTCGGTGTCACTTATGCCAAGAGAAAGGAAAATAATCAACGGGTTTCAAT  950

seq1  CACAGGTCTGGAAGATGAGAACCGAGACAAGACACTGGATTCGGACAGAA  999
      ||||||||||| ||||||| |||||||| |||||||||||||||||||| 
seq2  CACAGGTCTGG-AGATGAG-ACCGAGAC-AGACACTGGATTCGGACAGAT  997

seq1  TAAAATCACTG-TGTCCTGAGA--GAGAAGTGAGAGTGTGGGAGAAGCCC  1046
      ||||||||||| |||||||| |   ||||||||||||||||||||  || 
seq2  TAAAATCACTGTTGTCCTGAAAAGAAGAAGTGAGAGTGTGGGAGAGTCCT  1047

seq1  TCTGGGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGGCCAGAGAAGGGCA  1096
      ||||| |||||||      ||||  || ||   |||| ||||  ||| ||
seq2  TCTGGTAGAGAGA-----TGAGA-TGATAGTAGGAGGTCAGAAGAGGCCA  1091

seq1  CTGTG-CCCAGCCAGCATT  1114
      ||||| | |||||||||||
seq2  CTGTGTCTCAGCCAGCATT  1110