BAC Information

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BAC

Clone NameB6Ng01-077F22
Chromosome4 (Build37)
Map Location 116,837,595 - 116,976,349
singlet/doubletdoublet
Overlap geneKif2c, Gm1661, Tmem53, 4931406I20Rik
Upstream geneTspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8
Downstream geneLOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077F22.bB6Ng01-077F22.g
ACCDH893366DH893367
length1,1371,075
definitionDH893366|Mus musculus domesticus DNA, BAC clone: B6Ng01-077F22, 5' end.DH893367|Mus musculus domesticus DNA, BAC clone: B6Ng01-077F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,975,210 - 116,976,349)(116,837,595 - 116,838,679)
sequence
gaattcctggctcctctccctttgttttctgtgctggctcctcccctcgt
ctctcaacctgccccaataccccttatcaccctgcccttgcctcttttgc
cctccctctcttgtccgctcctcagcctcgctcgccctgagcccttgggt
gctgctgccaggctagcctcccaggtggttctacttctggaactttctag
atggagttcttcaaccttctgcctctaactgcccaacaacctaggcgggt
cctgtgtgtgctattgctgtacacctgggggctcacaaaagaagcaagga
ccttacagctcctacgcaaaggaggctgggttttcacaaacacaggcttg
acacacatgtatacagtgcacaaacactccattcccacacagctcagtgt
acacacacacacacacacacacacaccctgaaagaagccaccttcccaga
ggtgaacattcccaggtaccaagagcagccacatgcccacaggaaaagca
gagttctcagcagctcaacgggatcctttcccaagttcctgccacagccc
tcctacacctcacctgagtctgtctctcccctcctagaaccttactgaac
aagggctccttaaatccaagggcttggctactcagaacaaagcataactc
tgagtcaaacacagagtcagaagggccttcctcccatgcaaggacagcca
ctgaaagtgggggatgcagaagagtggattaagacgaaggagaagccaaa
ggacttacctagggtgcttactaggagagaactgggatttgaatggttgg
gagtgtgttagaggtaatgtccacagtcagagaggaagcaacaggtaggg
ctctgggtgagctgaggcacctctggatggcttccagctaggggctagat
gtgtgtgtatagagagacagacacggacataaatgggggctcaggatggc
aggctctgagacctctctgtggtctcagagaggaagaaacagccctgggc
atggaacactcacaggctaagctggtaggactggagctcagaacatctcc
cctatgaaagctggctcctgggtcgggaaacagtctctctgggaggtgct
ttaaaggggctgagacatcctaaagggaacttgggta
gaattccagaaccctttttcgtggtaagggagcaatggctgtcctcaagg
caaggctgcacctacaccaagagaacagactctttcctccttactaagat
tgctgagctccctgtccacagacagggcagcatctgcaaagcccccactc
accatgcaggtcctcgagttctccccaatgaacgagtccctcagcacctg
ggtcagcttgctctcacggaacggggtgtgagccttgttctgtcccagcg
cccggatgcactcctgtggggcaacagaaaaaacactggaccctctcttc
acttcttaggcagcctactctctcccttcccaactagctgccaggctcca
ctagcaccggcctgctaccttcagagccaggagagacttgttaatttctg
ctccctccatgcgagtctgccggtcagcactagatgtgtcggcccctcgt
tcattccctgccagatccaccaaagagaatttgccatgtaatctcccttt
agttcgaagaagaatctggaagcaggcgtgggagcgggaggaattggagt
tggcaaatgtttgtccagaagtcctattaaaaggagggaaagacaaaggt
tataaagttctggggccactgtccccagggaacccccaggtctacactag
cctaggcccagcagtgaaacctatggtaaaggaaggatacggatcaggat
cctaacaagtcccgtccgtgtcttccctctcgaacgtctcctttgtctta
acctagtatcttccaggcagtcaaatcagtacctgagtctgtgctggggc
actagccagacctcaggctcatgaagatggagaggggctgacggccacaa
ggaaagggggctaggtacctgtgcaaacttgagggctcttgtgtggatgg
agctctagcagagctcctgcctcacatgcaaaggaaggctctgggtttaa
tctcagcacagagagaagaaatctgacctccacactgctcagtgcctcac
tgtatgttgtcagcacagaggtgctcatttactctggcccacacagactc
aggctgctcactctcccaagggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_116975210_116976349
seq2: B6Ng01-077F22.b_47_1183 (reverse)

seq1  TACCCAGTCTCCCTTTA-GATGTTTTTCCAGCCCCTTTAAAGCACCTCCC  49
      ||||||   |||||||| ||||| |   ||||||||||||||||||||||
seq2  TACCCAAGTTCCCTTTAGGATGTCT---CAGCCCCTTTAAAGCACCTCCC  47

seq1  AGAGGAGGCTGTTTCCCGGCCCAGGGGCCAGCTTTCATAGGGGAGATG-T  98
      ||| ||| |||||||||| |||||| |||||||||||||||||||||| |
seq2  AGA-GAGACTGTTTCCCGACCCAGGAGCCAGCTTTCATAGGGGAGATGTT  96

seq1  CTGAGCTCAGGTCCTACCAGCTAAGCCTGTGAGTGTTCCATGCCCAGGGC  148
      ||||||||  |||||||||||| |||||||||||||||||||||||||||
seq2  CTGAGCTCCAGTCCTACCAGCTTAGCCTGTGAGTGTTCCATGCCCAGGGC  146

seq1  TGTTTCTTCCTCTCTGAGACCACAGAGAGGTCTCAGAGCCCTGCCATCCT  198
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTTTCTTCCTCTCTGAGACCACAGAGAGGTCTCAGAG-CCTGCCATCCT  195

seq1  GAGCCCCCATTTATGTCCGTGTCTGTCTCTCTATACACACACATCTAGCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCCATTTATGTCCGTGTCTGTCTCTCTATACACACACATCTAGCC  245

seq1  CCTAGCTGGAAGCCATCCAGAGGTGCCTCAGCTCACCCAGAGCCCTACCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTGGAAGCCATCCAGAGGTGCCTCAGCTCACCCAGAGCCCTACCT  295

seq1  GTTGCTTCCTCTCTGACTGTGGACATTACCTCTAACACACTCCCAACCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTCCTCTCTGACTGTGGACATTACCTCTAACACACTCCCAACCAT  345

seq1  TCAAATCCCAGTTCTCTCCTAGTAAGCACCCTAGGTAAGTCCTTTGGCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCCCAGTTCTCTCCTAGTAAGCACCCTAGGTAAGTCCTTTGGCTT  395

seq1  CTCCTTCGTCTTAATCCACTCTTCTGCATCCCCCACTTTCAGTGGCTGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCGTCTTAATCCACTCTTCTGCATCCCCCACTTTCAGTGGCTGTC  445

seq1  CTTGCATGGGAGGAAGGCCCTTCTGACTCTGTGTTTGACTCAGAGTTATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATGGGAGGAAGGCCCTTCTGACTCTGTGTTTGACTCAGAGTTATG  495

seq1  CTTTGTTCTGAGTAGCCAAGCCCTTGGATTTAAGGAGCCCTTGTTCAGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCTGAGTAGCCAAGCCCTTGGATTTAAGGAGCCCTTGTTCAGTA  545

seq1  AGGTTCTAGGAGGGGAGAGACAGACTCAGGTGAGGTGTAGGAGGGCTGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTAGGAGGGGAGAGACAGACTCAGGTGAGGTGTAGGAGGGCTGTG  595

seq1  GCAGGAACTTGGGAAAGGATCCCGTTGAGCTGCTGAGAACTCTGCTTTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAACTTGGGAAAGGATCCCGTTGAGCTGCTGAGAACTCTGCTTTTC  645

seq1  CTGTGGGCATGTGGCTGCTCTTGGTACCTGGGAATGTTCACCTCTGGGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGCATGTGGCTGCTCTTGGTACCTGGGAATGTTCACCTCTGGGAA  695

seq1  GGTGGCTTCTTTCAGGGTGTGTGTGTGTGTGTGTGTGTGTGTACACTGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTTCTTTCAGGGTGTGTGTGTGTGTGTGTGTGTGTGTACACTGAG  745

seq1  CTGTGTGGGAATGGAGTGTTTGTGCACTGTATACATGTGTGTCAAGCCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGGAATGGAGTGTTTGTGCACTGTATACATGTGTGTCAAGCCTG  795

seq1  TGTTTGTGAAAACCCAGCCTCCTTTGCGTAGGAGCTGTAAGGTCCTTGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGAAAACCCAGCCTCCTTTGCGTAGGAGCTGTAAGGTCCTTGCT  845

seq1  TCTTTTGTGAGCCCCCAGGTGTACAGCAATAGCACACACAGGACCCGCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTGAGCCCCCAGGTGTACAGCAATAGCACACACAGGACCCGCCT  895

seq1  AGGTTGTTGGGCAGTTAGAGGCAGAAGGTTGAAGAACTCCATCTAGAAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTTGGGCAGTTAGAGGCAGAAGGTTGAAGAACTCCATCTAGAAAG  945

seq1  TTCCAGAAGTAGAACCACCTGGGAGGCTAGCCTGGCAGCAGCACCCAAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAAGTAGAACCACCTGGGAGGCTAGCCTGGCAGCAGCACCCAAGG  995

seq1  GCTCAGGGCGAGCGAGGCTGAGGAGCGGACAAGAGAGGGAGGGCAAAAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGGCGAGCGAGGCTGAGGAGCGGACAAGAGAGGGAGGGCAAAAGA  1045

seq1  GGCAAGGGCAGGGTGATAAGGGGTATTGGGGCAGGTTGAGAGACGAGGGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGGCAGGGTGATAAGGGGTATTGGGGCAGGTTGAGAGACGAGGGG  1095

seq1  AGGAGCCAGCACAGAAAACAAAGGGAGAGGAGCCAGGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCAGCACAGAAAACAAAGGGAGAGGAGCCAGGAATTC  1137

seq1: chr4_116837595_116838679
seq2: B6Ng01-077F22.g_65_1139

seq1  GAATTCCAGAACCCTTTTTCGTGGTAAGGGAGCAATGGCTGTCCTCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACCCTTTTTCGTGGTAAGGGAGCAATGGCTGTCCTCAAGG  50

seq1  CAAGGCTGCACCTACACCAAGAGAACAGACTCTTTCCTCCTTACTAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGCACCTACACCAAGAGAACAGACTCTTTCCTCCTTACTAAGAT  100

seq1  TGCTGAGCTCCCTGTCCACAGACAGGGCAGCATCTGCAAAGCCCCCACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCTCCCTGTCCACAGACAGGGCAGCATCTGCAAAGCCCCCACTC  150

seq1  ACCATGCAGGTCCTCGAGTTCTCCCCAATGAACGAGTCCCTCAGCACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCAGGTCCTCGAGTTCTCCCCAATGAACGAGTCCCTCAGCACCTG  200

seq1  GGTCAGCTTGCTCTCACGGAACGGGGTGTGAGCCTTGTTCTGTCCCAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCTTGCTCTCACGGAACGGGGTGTGAGCCTTGTTCTGTCCCAGCG  250

seq1  CCCGGATGCACTCCTGTGGGGCAACAGAAAAAACACTGGACCCTCTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGATGCACTCCTGTGGGGCAACAGAAAAAACACTGGACCCTCTCTTC  300

seq1  ACTTCTTAGGCAGCCTACTCTCTCCCTTCCCAACTAGCTGCCAGGCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTAGGCAGCCTACTCTCTCCCTTCCCAACTAGCTGCCAGGCTCCA  350

seq1  CTAGCACCGGCCTGCTACCTTCAGAGCCAGGAGAGACTTGTTAATTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACCGGCCTGCTACCTTCAGAGCCAGGAGAGACTTGTTAATTTCTG  400

seq1  CTCCCTCCATGCGAGTCTGCCGGTCAGCACTAGATGTGTCGGCCCCTCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCATGCGAGTCTGCCGGTCAGCACTAGATGTGTCGGCCCCTCGT  450

seq1  TCATTCCCTGCCAGATCCACCAAAGAGAATTTGCCATGTAATCTCCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCCTGCCAGATCCACCAAAGAGAATTTGCCATGTAATCTCCCTTT  500

seq1  AGTTCGAAGAAGAATCTGGAAGCAGGCGTGGGAGCGGGAGGAATTGGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGAAGAAGAATCTGGAAGCAGGCGTGGGAGCGGGAGGAATTGGAGT  550

seq1  TGGCAAATGTTTGTCCAGAAGTCCTATTAAAAGGAGGGAAAGACAAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAATGTTTGTCCAGAAGTCCTATTAAAAGGAGGGAAAGACAAAGGT  600

seq1  TATAAAGTTCTGGGGCCACTGTCCCCAGGGAACCCCCAGGTCTACACTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTTCTGGGGCCACTGTCCCCAGGGAACCCCCAGGTCTACACTAG  650

seq1  CCTAGGCCCAGCAGTGAAACCTATGGTAAAGGAAGGATACGGATCAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCCCAGCAGTGAAACCTATGGTAAAGGAAGGATACGGATCAGGAT  700

seq1  CCTAACAAGTCCCGTCCGTGTCTTCCCTCTCGAACGTCTCCTTTGTCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAAGTCCCGTCCGTGTCTTCCCTCTCGAACGTCTCCTTTGTCTTA  750

seq1  ACCTAGTATCTTCCAGGCAGTCAAATCAGTACCTGAGTCTGTGCTGGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTATCTTCCAGGCAGTCAAATCAGTACCTGAGTCTGTGCTGGGGC  800

seq1  ACTAGCCAGACCTCAGGCTCATGAAGATGGAGAGGGGCTGACGGCCACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCCAGACCTCAGGCTCATGAAGATGGAGAGGGGCTGACGGCCACAA  850

seq1  GGAAAGGGGGCTAGGTACCTGTGCAAACTTGAGGGCTCTTGTGTGGATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGGGCTAGGTACCTGTGCAAACTTGAGGGCTCTTGTGTGGATGG  900

seq1  AGCTCTAGCAGAGCTCCTGCCTCACATGCAAAGGAAGGCTCTGGGTTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAGCAGAGCTCCTGCCTCACATGCAAAGGAAGGCTCTGGGTTTAA  950

seq1  TCCTCAGCACAGAGAGGAAGAAATCTGAACCCCACAACTGCCCAGTGCCC  1000
      | ||||||||||||| |||||||||||| | |||| ||||| ||||||| 
seq2  T-CTCAGCACAGAGA-GAAGAAATCTGACCTCCAC-ACTGCTCAGTGCCT  997

seq1  CACTGTATG-TGTCAGCACAGGAGGGTGCTCATTTACCTCTGGCCCACAA  1049
      ||||||||| |||||||||||   |||||||||||| ||||||||||| |
seq2  CACTGTATGTTGTCAGCACAG--AGGTGCTCATTTA-CTCTGGCCCAC-A  1043

seq1  CAGACTCAGGGCTGCCCACTTCTTCCACAAGGGAAA  1085
      |||||||| |||||| ||| |||  | |||||||||
seq2  CAGACTCA-GGCTGCTCAC-TCT--CCCAAGGGAAA  1075