BAC Information

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BAC

Clone NameB6Ng01-077J17
Chromosome4 (Build37)
Map Location 29,825,898 - 29,963,731
singlet/doubletdoublet
Overlap genenone
Upstream geneEpha7, LOC100040907, LOC100040811
Downstream geneLOC665185, LOC619906, LOC100040864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077J17.bB6Ng01-077J17.g
ACCDH893536DH893537
length1,1091,102
definitionDH893536|Mus musculus domesticus DNA, BAC clone: B6Ng01-077J17, 5' end.DH893537|Mus musculus domesticus DNA, BAC clone: B6Ng01-077J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,962,691 - 29,963,731)(29,825,898 - 29,827,023)
sequence
gaattcatacataatattgaaaacctagctaacaacacatggcttttcta
aatcattgtaattcctaattgccttacacatgtgtattatttcatccaca
aataagcatcacccatatccctcatcaaagaagattcttttatttttttt
taacatttatttattttatatatgtgagtacactgttgctcacttaagat
acaccagatgagggcatcggatcccattacagatgtttgtgagatgccat
gtggtttctgtgaattgaactcaggacctctggaagagcagtaagtgctc
ttaacccctgagccatctctccagccccaaagaagattctttgtgcaact
tatgaagaccaccaaaactggtcaaaacgctggaaaccattgacaatggg
tgtcaatctgtacttgatacatcttgatataatttctacaccctaggcta
atgaaacatcatggcacaagggtggggagattgacagtaagaactgtgat
agtatcttttctatagaacaaggaaactacacacatgtaatttcaacatt
attggttgcccaaacaagacctttttaatgacagaaagaggttgctgcaa
aaagcttaacctcctagagtggagaagatttcagaagcaaactaggaaat
ataggcaacatgagtgataggtttgcaagtgccacaagaatgtgaacata
atgcactttctcttcacgggagcaaaaaaaatcttcatatagcctcttct
taacacacagtgtctgctttttctttttctggtaaattgctgtttccttc
ttattgaagagagaatgacactattttatttaatattaaatatttctttg
tttcttttccacaatctagacaatgctattattaaaaataactgtctagg
aaatttgcagactgatacaatgcccatttgtttttcattatctaataaac
tatggaagtatagtaacttcatctgaagtcttatactctagtaaggcaca
tggtggcagtcatcatttattcattataactattttgttgtgatgtagat
ttcaatctagagagaagaacagatcattcatgttcacttaccttttccct
cgtgccatg
gaattctgttcaatgttttccttgtaaaattctcttggttaatagatttg
aagagctttcttcttggccactactcaaggagcataagttttattttctg
tgctggtacatctatatcaacaggtgtcaggacacatggatgtagtagtg
catgtatgtacacatatattctcacagattattaccgctttataagttaa
tgtggggcaagttttgatgtgatttctatttacattaaggacattccttt
ttctcacttccttaaatatctctcgcaaactaaaactccatttaatttta
aaatactcacaagtatttttgctgaacatggtaatttaaatttttaaaag
ttaagaacaaagtcttgtttctattctaaaaattttcctctgttgtgatc
aaatttcccatgcatagagtaaaataatgatttctacaattaagaatatg
atgtgccctgttcccactcaagtgtcaatttaaagtattgcttcttgcat
tcctctattggtcttacaaagctgctcttagtggtgacacctcagattac
tggacacattgatgggtctggcattatacagccagctttgtctttccagt
cctggccatgagttgagtgttcataatttgctgttgaatctaatcatgat
gctcaccaaaatcctaaaagtggtaggctccccaaattatgaactgaggc
aaaatatcccttttgctgataagttcatttccccatgtattttatgcagt
gatgagctgattaacacgctcatgaagggatgagccctcttctttatagt
atgttgttgtaactttataagtccttcacttatcaaccaaaacatcactt
gtaaatttgttttccctaactcttcaattttaaaattttatttaaatttg
agattttttccaggcaacacttgcttgaatttatttattattatgactta
ttttatagatattttcttatatacatttcaatgctatcccaaagttccct
aaccctccccccgcctgctccctactcacccacttctacttcttggcatg
gcttcctgtactgggcatataaggttgcaaacaagtaatatgtactgata
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_29962691_29963731
seq2: B6Ng01-077J17.b_123_1155 (reverse)

seq1  CATGCCACGA-GGAAAGGGTAAGTTGGAACCATGAATGATCTGGTTCTTC  49
      |||| ||||| ||||| |||||||  ||| |||||||||||| |||||||
seq2  CATGGCACGAGGGAAAAGGTAAGT--GAA-CATGAATGATCT-GTTCTTC  46

seq1  TCTCTAGATTTGAAAATCTTACAACCACAACAAAATAGTTATATTG-ATA  98
      ||||||||||   ||||| ||| | |||||||||||||||||| || |||
seq2  TCTCTAGATT--GAAATC-TAC-ATCACAACAAAATAGTTATAATGAATA  92

seq1  AATGATGACCTGCCACCAATGTGCCTTACTAGAGTATAAGACTTCAGATG  148
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  AATGATGA-CTGCCACC-ATGTGCCTTACTAGAGTATAAGACTTCAGATG  140

seq1  AAGTTACTATACTTCCATAGTTTATTAGATAATGAAAAACAAATGGGCAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACTATACTTCCATAGTTTATTAGATAATGAAAAACAAATGGGCAT  190

seq1  TGTATCAGTCTGCAAATTTCCTAGACAGTTATTTTTAATAATAGCATTGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCAGTCTGCAAATTTCCTAGACAGTTATTTTTAATAATAGCATTGT  240

seq1  CTAGATTGTGGAAAAGAAACAAAGAAATATTTAATATTAAATAAAATAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTGTGGAAAAGAAACAAAGAAATATTTAATATTAAATAAAATAGT  290

seq1  GTCATTCTCTCTTCAATAAGAAGGAAACAGCAATTTACCAGAAAAAGAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCTCTCTTCAATAAGAAGGAAACAGCAATTTACCAGAAAAAGAAA  340

seq1  AAGCAGACACTGTGTGTTAAGAAGAGGCTATATGAAGATTTTTTTTGCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACACTGTGTGTTAAGAAGAGGCTATATGAAGATTTTTTTTGCTC  390

seq1  CCGTGAAGAGAAAGTGCATTATGTTCACATTCTTGTGGCACTTGCAAACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGAAGAGAAAGTGCATTATGTTCACATTCTTGTGGCACTTGCAAACC  440

seq1  TATCACTCATGTTGCCTATATTTCCTAGTTTGCTTCTGAAATCTTCTCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTCATGTTGCCTATATTTCCTAGTTTGCTTCTGAAATCTTCTCCA  490

seq1  CTCTAGGAGGTTAAGCTTTTTGCAGCAACCTCTTTCTGTCATTAAAAAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGAGGTTAAGCTTTTTGCAGCAACCTCTTTCTGTCATTAAAAAGG  540

seq1  TCTTGTTTGGGCAACCAATAATGTTGAAATTACATGTGTGTAGTTTCCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTGGGCAACCAATAATGTTGAAATTACATGTGTGTAGTTTCCTT  590

seq1  GTTCTATAGAAAAGATACTATCACAGTTCTTACTGTCAATCTCCCCACCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATAGAAAAGATACTATCACAGTTCTTACTGTCAATCTCCCCACCC  640

seq1  TTGTGCCATGATGTTTCATTAGCCTAGGGTGTAGAAATTATATCAAGATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCATGATGTTTCATTAGCCTAGGGTGTAGAAATTATATCAAGATG  690

seq1  TATCAAGTACAGATTGACACCCATTGTCAATGGTTTCCAGCGTTTTGACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGTACAGATTGACACCCATTGTCAATGGTTTCCAGCGTTTTGACC  740

seq1  AGTTTTGGTGGTCTTCATAAGTTGCACAAAGAATCTTCTTTGGGGCTGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGGTGGTCTTCATAAGTTGCACAAAGAATCTTCTTTGGGGCTGGA  790

seq1  GAGATGGCTCAGGGGTTAAGAGCACTTACTGCTCTTCCAGAGGTCCTGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAGGGGTTAAGAGCACTTACTGCTCTTCCAGAGGTCCTGAG  840

seq1  TTCAATTCACAGAAACCACATGGCATCTCACAAACATCTGTAATGGGATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCACAGAAACCACATGGCATCTCACAAACATCTGTAATGGGATC  890

seq1  CGATGCCCTCATCTGGTGTATCTTAAGTGAGCAACAGTGTACTCACATAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGCCCTCATCTGGTGTATCTTAAGTGAGCAACAGTGTACTCACATAT  940

seq1  ATAAAATAAATAAATGTTAAAAAAAAATAAAAGAATCTTCTTTGATGAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAATAAATGTTAAAAAAAAATAAAAGAATCTTCTTTGATGAGG  990

seq1  GATATGGGTGATGCTTATTTGTGGATGAAATAATACACATGTG  1041
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGGTGATGCTTATTTGTGGATGAAATAATACACATGTG  1033

seq1: chr4_29825898_29827023
seq2: B6Ng01-077J17.g_71_1172

seq1  GAATTCTGTTCAATGTTTTCCTTGTAAAATTCTCTTGGTTAATAGATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCAATGTTTTCCTTGTAAAATTCTCTTGGTTAATAGATTTG  50

seq1  AAGAGCTTTCTTCTTGGCCACTACTCAAGGAGCATAAGTTTTATTTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTTTCTTCTTGGCCACTACTCAAGGAGCATAAGTTTTATTTTCTG  100

seq1  TGCTGGTACATCTATATCAACAGGTGTCAGGACACATGGATGTAGTAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTACATCTATATCAACAGGTGTCAGGACACATGGATGTAGTAGTG  150

seq1  CATGTATGTACACATATATTCTCACAGATTATTACCGCTTTATAAGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGTACACATATATTCTCACAGATTATTACCGCTTTATAAGTTAA  200

seq1  TGTGGGGCAAGTTTTGATGTGATTTCTATTTACATTAAGGACATTCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGCAAGTTTTGATGTGATTTCTATTTACATTAAGGACATTCCTTT  250

seq1  TTCTCACTTCCTTAAATATCTCTCGCAAACTAAAACTCCATTTAATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTTCCTTAAATATCTCTCGCAAACTAAAACTCCATTTAATTTTA  300

seq1  AAATACTCACAAGTATTTTTGCTGAACATGGTAATTTAAATTTTTAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTCACAAGTATTTTTGCTGAACATGGTAATTTAAATTTTTAAAAG  350

seq1  TTAAGAACAAAGTCTTGTTTCTATTCTAAAAATTTTCCTCTGTTGTGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACAAAGTCTTGTTTCTATTCTAAAAATTTTCCTCTGTTGTGATC  400

seq1  AAATTTCCCATGCATAGAGTAAAATAATGATTTCTACAATTAAGAATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCCATGCATAGAGTAAAATAATGATTTCTACAATTAAGAATATG  450

seq1  ATGTGCCCTGTTCCCACTCAAGTGTCAATTTAAAGTATTGCTTCTTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCCTGTTCCCACTCAAGTGTCAATTTAAAGTATTGCTTCTTGCAT  500

seq1  TCCTCTATTGGTCTTACAAAGCTGCTCTTAGTGGTGACACCTCAGATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTATTGGTCTTACAAAGCTGCTCTTAGTGGTGACACCTCAGATTAC  550

seq1  TGGACACATTGATGGGTCTGGCATTATACAGCCAGCTTTGTCTTTCCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACATTGATGGGTCTGGCATTATACAGCCAGCTTTGTCTTTCCAGT  600

seq1  CCTGGCCATGAGTTGAGTGTTCATAATTTGCTGTTGAATCTAATCATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCATGAGTTGAGTGTTCATAATTTGCTGTTGAATCTAATCATGAT  650

seq1  GCTCACCAAAATCCTAAAAGTGGTAGGCTCCCCAAATTATGAACTGAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCAAAATCCTAAAAGTGGTAGGCTCCCCAAATTATGAACTGAGGC  700

seq1  AAAATATCCCTTTTGCTGATAAGTTCATTTCCCCATGTATTTTATGCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCCCTTTTGCTGATAAGTTCATTTCCCCATGTATTTTATGCAGT  750

seq1  GATGAGCTGATTAACACGCTCATGAAGGGATGAGCCCTCTTCTTTATAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCTGATTAACACGCTCATGAAGGGATGAGCCCTCTTCTTTATAGT  800

seq1  ATGTTGTTGTAACTTTATAAGTCCTTCACTTATCAACCAAAACATCACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTGTAACTTTATAAGTCCTTCACTTATCAACCAAAACATCACTT  850

seq1  GTAAATTTGTTTTCCCTAACTCTTCAATTTTTAAAATTTTATTTAAATTT  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTAAATTTGTTTTCCCTAACTCTTCAA-TTTTAAAATTTTATTTAAATTT  899

seq1  GAGAATTTTTTTCCAGGCAACACTTGCTTTGAATTTATTTATTTATTATG  950
      ||||  ||||||||||||||||||||| ||||||||||||| ||||||||
seq2  GAGA--TTTTTTCCAGGCAACACTTGC-TTGAATTTATTTA-TTATTATG  945

seq1  ACTATTTTTATTAGATATTTTCTTTATATACATTTCAAATGCTATCCCAA  1000
      |||  ||||| ||||||||||| ||||||||||||| ||||||||||| |
seq2  ACTTATTTTA-TAGATATTTTC-TTATATACATTTC-AATGCTATCCC-A  991

seq1  AAGTTCCCTATACCCTCCCCCCGCCCTGCTCCCCTACTCACCCACTCCTA  1050
      |||||||||| |||||||||||| |||||| ||||||||||||||| |||
seq2  AAGTTCCCTA-ACCCTCCCCCCG-CCTGCT-CCCTACTCACCCACTTCTA  1038

seq1  CTTCTTGGCCATGGCTTTCCCCTGTACTGGGGCATATAAAGTTTGCAATA  1100
      |||||||| ||||||||   |||||||| |||||||| ||| |||||  |
seq2  CTTCTTGG-CATGGCTT---CCTGTACT-GGGCATAT-AAGGTTGCA--A  1080

seq1  CCAAGTTAATATATGTACATGATAAA  1126
       |||||    |||||||| |||||||
seq2  ACAAGT---AATATGTAC-TGATAAA  1102