BAC Information

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BAC

Clone NameB6Ng01-077M17
Chromosome4 (Build37)
Map Location 84,002,431 - 84,137,833
singlet/doubletdoublet
Overlap geneBnc2
Upstream geneSnapc3, Psip1, LOC100040611, 4930473A06Rik, LOC668010
Downstream geneLOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077M17.bB6Ng01-077M17.g
ACCDH893676DH893677
length936739
definitionDH893676|Mus musculus domesticus DNA, BAC clone: B6Ng01-077M17, 5' end.DH893677|Mus musculus domesticus DNA, BAC clone: B6Ng01-077M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,136,897 - 84,137,833)(84,002,431 - 84,003,166)
sequence
gaattccacaataatggttacaataatgtttcaagatgtgatttcagcag
aggcctaagtcactgaactaatcgcaacttggataggtttaaaatgattt
aaaacacatcttgtggtttttaaatatgtttacttctctcacttatgtac
caataggccccgtgatcacgtgggctcagggcagcagccctgtttgatgg
agaatgtatggactatgtaacacccacagactatggtctcaggctgtcct
tgatattcctcatctacaggtcatagggtatggtgatgtcaaagctttct
gaatgaacagtctgaccttttgctgtggggttggcaacacaaggctgcat
tgaagtaagctggtatttccaaggcagcgcttccatgtgaaatgaggata
ggcagctctgaggaactgtgttgtgaccctaggaagagtcaggtttagtc
atatttctctgccttgtctcagaaacgtgtgcacatgctgaatgaatgtg
acaaatactgtttttgcatggagtcgcagtgtggataggcgaacgaagga
acactttgcacaacggacacatgttctaggtgcatgtttgagtaaatgtg
ggacctgtggcactagagaaaaagcaagctcacttaaaaacgtctctcct
tgagggcaaatgcatgtttgtgcttatctttatattctgctgtttcacat
gtagccctgctcatagtagaccctggcaaagagtatcatactacttcctg
ttttgtaaacttgaagtgaattttccatatttccaagaaagtttcttctt
ttcatgttaagagtttgatagatgttggggtttcatcctgttcttgttct
gtaatgttaaagaccaaatacctcattcactgttatcataccgattaaga
gtggattggggtaaggtggtacacaacttttgattc
gaattcaatgtcattagctgcagagaaaagagtgtggcgatccgagaggg
aatcacatcagatcctggaagtgggcagtctgtggctgtcagcagtgtgc
aatggagctgcttcaaagcccaggctgtgacccgaatgctgtacatccct
gtgcccggggagagaggatcaatgcctgtgtttgctgagctctagtcatc
ccctcggctagaaaaagctacgttgaaaggcatgctaaggggcctctggg
cagcctgcagcctggtgttagcagagtttgttccacagcttggtgggtga
atgcatagacaccaaagcctagctcaccttcacatatacaagtgcccccc
ccccccccacatcccttcattctatcccatcaactcccctctggctgtct
gtttagtgtcactcagttgggatggatcctgttaaagatctgacgcttgg
tgaggagtctaaggtgtctggaccgtctgcctctaatcataaacaccaca
gctggcaatgatgtggtcaaaaaaagaaaagaaaaaaaaagaaaaaaaaa
acccaccaccttgatccagtacacattctctttgatgtctctgcagtgag
ttcactgcccagagaaaaggtacagatttaaaaaaaaaaaaaaacaaaaa
ggttttgaaaaaaaattatcaagctttgacattcttaaaatcataaccat
atgcctttcccgttccgtgctttaaaaaattttcatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_84136897_84137833
seq2: B6Ng01-077M17.b_45_980 (reverse)

seq1  GAATC-AAAGTTGTGTACCACCTTACCCCACTCCAACTCTTTATCGGTAT  49
      ||||| |||||||||||||||||||||||| ||| |||||| ||||||||
seq2  GAATCAAAAGTTGTGTACCACCTTACCCCAATCC-ACTCTTAATCGGTAT  49

seq1  GATTACAGTGAATGAGGTATTTGGTCTTTAACATTAACAGAACAAGATAC  99
      ||| ||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  GATAACAGTGAATGAGGTATTTGGTCTTTAACATT-ACAGAACAAGA-AC  97

seq1  AGGATG-AACCCCAACATCTATCAAACTCTTAACATGAAAAGAAGAAACC  148
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGATGAAACCCCAACATCTATCAAACTCTTAACATGAAAAGAAGAAACT  147

seq1  TTCTTGGAAATATGGAAAATTCACTTCAAGTTTACAAAACAGGAAGTAGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGAAATATGGAAAATTCACTTCAAGTTTACAAAACAGGAAGTAGT  197

seq1  ATGATACTCTTTGCCAGGGTCTACTATGAGCAGGGCTACATGTGAAACAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACTCTTTGCCAGGGTCTACTATGAGCAGGGCTACATGTGAAACAG  247

seq1  CAGAATATAAAGATAAGCACAAACATGCATTTGCCCTCAAGGAGAGACGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATAAAGATAAGCACAAACATGCATTTGCCCTCAAGGAGAGACGT  297

seq1  TTTTAAGTGAGCTTGCTTTTTCTCTAGTGCCACAGGTCCCACATTTACTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTGAGCTTGCTTTTTCTCTAGTGCCACAGGTCCCACATTTACTC  347

seq1  AAACATGCACCTAGAACATGTGTCCGTTGTGCAAAGTGTTCCTTCGTTCG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCACCTAGAACATGTGTCCGTTGTGCAAAGTGTTCCTTCGTTCG  397

seq1  CCTATCCACACTGCGACTCCATGCAAAAACAGTATTTGTCACATTCATTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCACACTGCGACTCCATGCAAAAACAGTATTTGTCACATTCATTC  447

seq1  AGCATGTGCACACGTTTCTGAGACAAGGCAGAGAAATATGACTAAACCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTGCACACGTTTCTGAGACAAGGCAGAGAAATATGACTAAACCTG  497

seq1  ACTCTTCCTAGGGTCACAACACAGTTCCTCAGAGCTGCCTATCCTCATTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCCTAGGGTCACAACACAGTTCCTCAGAGCTGCCTATCCTCATTT  547

seq1  CACATGGAAGCGCTGCCTTGGAAATACCAGCTTACTTCAATGCAGCCTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGAAGCGCTGCCTTGGAAATACCAGCTTACTTCAATGCAGCCTTG  597

seq1  TGTTGCCAACCCCACAGCAAAAGGTCAGACTGTTCATTCAGAAAGCTTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCAACCCCACAGCAAAAGGTCAGACTGTTCATTCAGAAAGCTTTG  647

seq1  ACATCACCATACCCTATGACCTGTAGATGAGGAATATCAAGGACAGCCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACCATACCCTATGACCTGTAGATGAGGAATATCAAGGACAGCCTG  697

seq1  AGACCATAGTCTGTGGGTGTTACATAGTCCATACATTCTCCATCAAACAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATAGTCTGTGGGTGTTACATAGTCCATACATTCTCCATCAAACAG  747

seq1  GGCTGCTGCCCTGAGCCCACGTGATCACGGGGCCTATTGGTACATAAGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGCCCTGAGCCCACGTGATCACGGGGCCTATTGGTACATAAGTG  797

seq1  AGAGAAGTAAACATATTTAAAAACCACAAGATGTGTTTTAAATCATTTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTAAACATATTTAAAAACCACAAGATGTGTTTTAAATCATTTTA  847

seq1  AACCTATCCAAGTTGCGATTAGTTCAGTGACTTAGGCCTCTGCTGAAATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATCCAAGTTGCGATTAGTTCAGTGACTTAGGCCTCTGCTGAAATC  897

seq1  ACATCTTGAAACATTATTGTAACCATTATTGTGGAATTC  937
      |||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTGAAACATTATTGTAACCATTATTGTGGAATTC  936

seq1: chr4_84002431_84003166
seq2: B6Ng01-077M17.g_68_806

seq1  GAATTCAATGTCATTAGCTGCAGAGAAAAGAGTGTGGCGATCCGAGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTCATTAGCTGCAGAGAAAAGAGTGTGGCGATCCGAGAGGG  50

seq1  AATCACATCAGATCCTGGAAGTGGGCAGTCTGTGGCTGTCAGCAGTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACATCAGATCCTGGAAGTGGGCAGTCTGTGGCTGTCAGCAGTGTGC  100

seq1  AATGGAGCTGCTTCAAAGCCCAGGCTGTGACCCGAATGCTGTACATCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGCTGCTTCAAAGCCCAGGCTGTGACCCGAATGCTGTACATCCCT  150

seq1  GTGCCCGGGGAGAGAGGATCAATGCCTGTGTTTGCTGAGCTCTAGTCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCGGGGAGAGAGGATCAATGCCTGTGTTTGCTGAGCTCTAGTCATC  200

seq1  CCCTCGGCTAGAAAAAGCTACGTTGAAAGGCATGCTAAGGGGCCTCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGGCTAGAAAAAGCTACGTTGAAAGGCATGCTAAGGGGCCTCTGGG  250

seq1  CAGCCTGCAGCCTGGTGTTAGCAGAGTTTGTTCCACAGCTTGGTGGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGCAGCCTGGTGTTAGCAGAGTTTGTTCCACAGCTTGGTGGGTGA  300

seq1  ATGCATAGACACCAAAGCCTAGCTCACCTTCACATATACAAGTGCCCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAGACACCAAAGCCTAGCTCACCTTCACATATACAAGTGCCCCCC  350

seq1  CCCCCCCCACATCCCTTCATTCTATCCCATCAACTCCCCTCTGGCTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCACATCCCTTCATTCTATCCCATCAACTCCCCTCTGGCTGTCT  400

seq1  GTTTAGTGTCACTCAGTTGGGATGGATCCTGTTAAAGATCTGACGCTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTGTCACTCAGTTGGGATGGATCCTGTTAAAGATCTGACGCTTGG  450

seq1  TGAGGAGTCTAAGGTGTCTGGACCGTCTGCCTCTAATCATAAACACCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGTCTAAGGTGTCTGGACCGTCTGCCTCTAATCATAAACACCACA  500

seq1  GCTGGCAATGATGTGGTCAAAAAAAGAAAAGAAAAAAAAAGAAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAATGATGTGGTCAAAAAAAGAAAAGAAAAAAAAAGAAAAAAAAA  550

seq1  ACCCACCACCTTGATCCAGTACACATTCTCTTTGATGTCTCTGCAGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCACCTTGATCCAGTACACATTCTCTTTGATGTCTCTGCAGTGAG  600

seq1  TTCACTGCCCAGAGAAAAAGGTACAGATTTAAAAAAAAAAAAAAAAAAAA  650
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  TTCACTGCCCAGAG-AAAAGGTACAGATTTAAAAAAAAAAAAAAACAAAA  649

seq1  AGG-TTTGAAAAAAAATTATCAAGC-TTGACATTC-TCAAATCATAACCA  697
      ||| ||||||||||||||||||||| ||||||||| | ||||||||||||
seq2  AGGTTTTGAAAAAAAATTATCAAGCTTTGACATTCTTAAAATCATAACCA  699

seq1  TATGCCTTTCCCGTTCCGTGCTTTAAAAAA-TTTCATATA  736
      |||||||||||||||||||||||||||||| |||||||||
seq2  TATGCCTTTCCCGTTCCGTGCTTTAAAAAATTTTCATATA  739