BAC Information

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BAC

Clone NameB6Ng01-078D01
Chromosome4 (Build37)
Map Location 81,615,604 - 81,616,759
singlet/doubletsinglet
Overlap genenone
Upstream geneMpdz, LOC100040131, LOC100040144, EG668895
Downstream geneLOC100040164, EG545641, Nfib, Zdhhc21, Cer1, Frem1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078D01.bB6Ng01-078D01.g
ACCDH893961DH893962
length1,1521,137
definitionDH893961|Mus musculus domesticus DNA, BAC clone: B6Ng01-078D01, 5' end.DH893962|Mus musculus domesticus DNA, BAC clone: B6Ng01-078D01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcaccttaaaaaatg
ctcaacatccttaatcatcagagaaatgcaaatcaaaataaccctgagat
tccatcttacacccgtcagaatggctaagatcaaaaattcaggtgagagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggactgtaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaagatcccgaatacctctcctgggca
tatatccagaagatgtcacaacgggtaagaaggacacatgctccactatg
ttcatattagccttatttataatatccagaagctggaaagaacccagatg
cccctcaacagaggaatgtatacaaaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaagaatgaatttgtgaaattcctaggcaaa
tggttggacctggagggcatcatcctgagtgaagtaacacaatcaaaaaa
gaactcaaatgatatgtactcactgataagtggatattagcccaggaact
tattatagggagttataaggtacaatttgaaaaacacctgaaactgaaga
agaacgaagaaggaagtgtggacactttgccccttcttagaattggaaac
aatcacccatggaaggagttacagagacaaagtttggagctgtgacgaaa
ggatggaccatttagcgactgccatatccagggatccatcccataattag
cctccaaacgatgacaccattgcatacactagcaagtgtttgctgcaagg
accgtgatatagctgtctcttgtgagactaggccggggcctagcaaacac
agaagtggatactcacagtctactattggatggatcacagggccccaatg
gaggagctagagaaaatatccacgagctaagagatctgcaccctgtaggt
gcaacattatgactacagtatcccggagctctgactctagctgcatatgt
ttcaaagatgcctagtggcatcactgcaagagagcatgaaacgcacctat
atgcccagtacaggaacacagccaaaggtggaatggtgggtaaagggatg
gg
gaattcaatctagcaatttcaatctcaggacaaactctgtaagaagaaaa
cccttgtcaccccacttggttcactgactcagaacggcccacatgccatg
tcgtgttgccaaatcgaacatctgcatttcagttgctgcatgcctttggc
gttggcgttggccctctgaccacagcgcttcctacagcagctgtttcagt
ggcttggcttctttctgttgccctaggtcttacggtgtagcaagaggaca
cccacagtggatgccaagagagtcatcctaatgaatggcatattacggac
cttgggaatgtgacttggtgtcgtttcatagagtagctggctaaatcccg
gttactgaaggatcaagttaaatcaggcagaaaaatgatgtggagattct
gcttacaggaagtcagccacagaagcttgcttgtcacaaccaaggctccc
tttgaggagctctacagggagaatttaaaatgatatgagaatgacttagg
tcatgtggggcagtactgcagaacggaagtcagtcacaggcttcagaaag
aggaagattctttttcccactgtgttcccttcccatgtaacagctccttg
ctcccacactcctgaatataaacactagtccatacactcagctatgggct
cccttctgcaacaatctcactggacacagaactttgtaacctgatgaaat
cccaccacaaatgggaaaaacaaaaacaaaacaagacaaacaaaaaaaca
tatttcagtccccaaatgtcagcaggaggatggggtagggcataatgaac
ctaactctaaagcaaataaaacatcttttaaaatgttgctgcttgctgcc
aaatgtgggttctgtcgcagtaccacaggggctatttgcacatggcatgg
tcttcccgatgaagaagcatggctggcatgccagaaggagctagcaatta
acactgccaacgctctggagatgccttacagagcttgagctggaaacatg
gctgctagtcacccttctgcagcacagctgggatgtggcagcagtggctg
cctcattggttggcctcactcattgttgaaattcagatctgtgggttgct
tgggaggttacatggagataggcctcaagtctatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_81615604_81616759
seq2: B6Ng01-078D01.g_68_1204 (reverse)

seq1  AACATAGGACATTGAGCCCTATCTCCAATGGTATAAACCCTCCCAAAGCA  50
      |||||| ||| ||||| ||||||||||    | |||  |||||| |||| 
seq2  AACATA-GAC-TTGAGGCCTATCTCCA----TGTAA--CCTCCC-AAGC-  40

seq1  AACCCACAGATCTGATATTCCACAACAATGAGTTTGAGGCC-ACACATGA  99
      |||||||||||||||  ||   ||||||||||  ||||||| ||  ||||
seq2  AACCCACAGATCTGAATTT---CAACAATGAG--TGAGGCCAACCAATGA  85

seq1  GGCAGCCACTGCTGGCCACATCCCAGCTGTGCTGCAGAAGGGTGACTAGC  149
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCACTGCT-GCCACATCCCAGCTGTGCTGCAGAAGGGTGACTAGC  134

seq1  AGCCATGGTTTCCAGCTCAGGCTTCTGTAAGGCATCTCCAGAGGCGTTGG  199
      |||||| |||||||||||| || ||||||||||||||||||| |||||||
seq2  AGCCAT-GTTTCCAGCTCAAGC-TCTGTAAGGCATCTCCAGA-GCGTTGG  181

seq1  CAGTGTTAATTGCTAGCTCCTTCTGGCATGCCAGCCATGCTTCTTCATCG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTAATTGCTAGCTCCTTCTGGCATGCCAGCCATGCTTCTTCATCG  231

seq1  GGAAGACCATGCCATGTGCAAATAGCCCCCTGTGGTACTGCGACAGAACC  299
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGAAGACCATGCCATGTGCAAATAG-CCCCTGTGGTACTGCGACAGAACC  280

seq1  CACATTTGGCAGCAAGCAGCAACATTTTAAAAGATGTTTTATTTGCTTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTGGCAGCAAGCAGCAACATTTTAAAAGATGTTTTATTTGCTTTA  330

seq1  GAGTTAGGTTCATTATGCCCTACCCCATCCTCCTGCTGACATTTGGGGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGGTTCATTATGCCCTACCCCATCCTCCTGCTGACATTTGGGGAC  380

seq1  TGAAATATGTTTTTTTGTTTGTCTTGTTTTGTTTTTGTTTTTCCCATTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATGTTTTTTTGTTTGTCTTGTTTTGTTTTTGTTTTTCCCATTTG  430

seq1  TGGTGGGATTTCATCAGGTTACAAAGTTCTGTGTCCAGTGAGATTGTTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGATTTCATCAGGTTACAAAGTTCTGTGTCCAGTGAGATTGTTGC  480

seq1  AGAAGGGAGCCCATAGCTGAGTGTATGGACTAGTGTTTATATTCAGGAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGAGCCCATAGCTGAGTGTATGGACTAGTGTTTATATTCAGGAGT  530

seq1  GTGGGAGCAAGGAGCTGTTACATGGGAAGGGAACACAGTGGGAAAAAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGCAAGGAGCTGTTACATGGGAAGGGAACACAGTGGGAAAAAGAA  580

seq1  TCTTCCTCTTTCTGAAGCCTGTGACTGACTTCCGTTCTGCAGTACTGCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCTTTCTGAAGCCTGTGACTGACTTCCGTTCTGCAGTACTGCCC  630

seq1  CACATGACCTAAGTCATTCTCATATCATTTTAAATTCTCCCTGTAGAGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGACCTAAGTCATTCTCATATCATTTTAAATTCTCCCTGTAGAGCT  680

seq1  CCTCAAAGGGAGCCTTGGTTGTGACAAGCAAGCTTCTGTGGCTGACTTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAGGGAGCCTTGGTTGTGACAAGCAAGCTTCTGTGGCTGACTTCC  730

seq1  TGTAAGCAGAATCTCCACATCATTTTTCTGCCTGATTTAACTTGATCCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCAGAATCTCCACATCATTTTTCTGCCTGATTTAACTTGATCCTT  780

seq1  CAGTAACCGGGATTTAGCCAGCTACTCTATGAAACGACACCAAGTCACAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACCGGGATTTAGCCAGCTACTCTATGAAACGACACCAAGTCACAT  830

seq1  TCCCAAGGTCCGTAATATGCCATTCATTAGGATGACTCTCTTGGCATCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGGTCCGTAATATGCCATTCATTAGGATGACTCTCTTGGCATCCA  880

seq1  CTGTGGGTGTCCTCTTGCTACACCGTAAGACCTAGGGCAACAGAAAGAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTGTCCTCTTGCTACACCGTAAGACCTAGGGCAACAGAAAGAAG  930

seq1  CCAAGCCACTGAAACAGCTGCTGTAGGAAGCGCTGTGGTCAGAGGGCCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCACTGAAACAGCTGCTGTAGGAAGCGCTGTGGTCAGAGGGCCAA  980

seq1  CGCCAACGCCAAAGGCATGCAGCAACTGAAATGCAGATGTTCGATTTGGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAACGCCAAAGGCATGCAGCAACTGAAATGCAGATGTTCGATTTGGC  1030

seq1  AACACGACATGGCATGTGGGCCGTTCTGAGTCAGTGAACCAAGTGGGGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGACATGGCATGTGGGCCGTTCTGAGTCAGTGAACCAAGTGGGGTG  1080

seq1  ACAAGGGTTTTCTTCTTACAGAGTTTGTCCTGAGATTGAAATTGCTAGAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGTTTTCTTCTTACAGAGTTTGTCCTGAGATTGAAATTGCTAGAT  1130

seq1  TGAATTC  1156
      |||||||
seq2  TGAATTC  1137