BAC Information

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BAC

Clone NameB6Ng01-078D06
Chromosome4 (Build37)
Map Location 145,030,148 - 145,040,011
singlet/doubletdoublet
Overlap genenone
Upstream geneAadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282
Downstream gene9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078D06.bB6Ng01-078D06.g
ACCDH893971DH893972
length1,0401,114
definitionDH893971|Mus musculus domesticus DNA, BAC clone: B6Ng01-078D06, 5' end.DH893972|Mus musculus domesticus DNA, BAC clone: B6Ng01-078D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,030,148 - 145,037,409)(145,038,941 - 145,040,011)
sequence
gaattccatattaggtgttatgaataagctttgagaatctaggttggtgg
gcaggaactaggttacgggtacactctaaatatatcattgcttgctttca
tggctgtacaaacgttgtcaagattcctggtatcattttgcatttaattt
ttttaaaatatggtttaccattttatgtaatggagttgtatttatttcat
ctttgaatcgttcaattcttgatatgaaatttcaagaagaattcaatctt
tgttcttcagacagaacctgggagaagttcaacaaaaagaatgagtgtgt
ctctgctaaacatgccacaggtcagtgtcctttccacatttcttttaaaa
aaaaaaaaaaaaaacccaactttttattcaaatcatccaaatgttttatt
ctccacatatggaatattatctaaagggctcattttttacgatctttatt
ttcttctgtaatagtgaaaatttaatgttttggtctttcatgtatacatc
atctttatattttaacttgattttatattgtgaggacatataattccctt
ggactagatacctgcatgtttcaaaaaggatctattggaatgatgctcaa
agaacatattgatggatattttctatgttgaataagttctgtccttttgt
attagtgtgaagtaaggtctcttgtgctacataaatggcatttcagggaa
ggtcaggtttctagcttgtgaatgaggatgtaaaaattcacatcactaaa
gaagatatgaaagagtagaatttgtagaaagtaaaattataagagatcca
ctgttttgaatcctaatagtaaatatattattaactccctagagtcacag
atgatggaaggaaaatgtctttcttttgccattattgtgattgtgagctg
atacagatttcagtattctcacaactcttttttcatggctcatgtcacac
agtaatcactgttgacgcctgaaatcgtattgtctcagagagaaactgtc
cctgtcgctaatgatcaatatagaaatgtattttcctctc
gaattctcagattgtctttgttagtatttctcacattcactgcatttgta
aggtttctctcctgtatgaaatttctgatgaatactaagatgggattttc
gggtaaagaatttgtcactttcactacatttgtaaggtttctctcctgta
tgaattctctgatgccttctcagattgcctttttcagtaaagcaattgtc
acattcactgcatttgtaaggtttctctcctgtatgaattctctgatgag
atctcaaattaaatttttgggtaaagcatttgtcacattcactgcatttg
taaggtttctctcctgtatgaattctctgatgaattctcagagtgccttt
tctagtaaagcatttgtcacattcactgcatttgtaaggtttttctcctg
tatgaattctctgatgccttctcagagtgcctttttcagtaaagcacttg
tcacatccactgcatttgtaaggtttctctcctgcatgaagtttctgatg
attattaagatgagattttggggaaaagcatttgtcacattcagtacatt
tgtgaggtgtataatggggggattctagaaacacattgctaagcttgtta
catttagaagacttctcttgaatattcatgtgttcaagaacaatgtactg
gctgtcttgatccatgaccttcccatacattccatatatgcaatgatttc
ctgaaaaaaaaaaaacgggtggggggcaattagaggtgacatgatttact
ttatataaggactaaggaattcaataatcagtgatctcatggattcgtac
tctcaaaagaggtttttttcttttttttttttatcattacatgtatcctc
agaagaacctcaaatattatttatatcaaatgactggaaatgataaaagc
ctgccaaattttattttcaaatttgacatcatacccacctcaaatataat
gacccagaattgctctctcttaagaaaagagggacaagaatggaaaagag
gctgatgtaagacatcagagactggtacaaagagatgcagactggtacac
atttgactgaccaggggactaaatgaaagagttaggtagactgtagaaag
cctgaaggtttgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145030148_145037409
seq2: B6Ng01-078D06.b_49_1085

seq1  TTCCATATGAGGTGTTTTGAATAAACTTTGAGAATCTAGGTTGGTGGGCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGAACTAGGTTACAGGTACACTCTAAATATATCATTACTTGCTTTCGTGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTGTACAAATGTTTTCTAGATTCCTGGTATCATTTTGCATTTAATTTTTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TAAAATATGCTTTAGCATTGTCTGTAGTGTAGTTGTATTTATTTCATCTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TGAATCGTTCAATTCTTTTTTTTCCTTTTTTAATATTTTTATTAGGTATT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCC  300
                                                        
seq2  --------------------------------------------------  0

seq1  CCCCCCACTTCCCTACCCACCCACTCCCACTTTTTGGCCCTGGCGTTCAC  350
                                                        
seq2  --------------------------------------------------  0

seq1  TTGTACTGGGGCATATAAAGTTTGCATGACCAATGGGACTCTCTTTCCAG  400
                                                        
seq2  --------------------------------------------------  0

seq1  TGATGGCCAACTAGGCCATCTTTTGATACATATGTAGCTAGAGACAAGAG  450
                                                        
seq2  --------------------------------------------------  0

seq1  CTCCTGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAG  500
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTACATTGGGGGCCTT  550
                                                        
seq2  --------------------------------------------------  0

seq1  GTGATCCATCCAATAGCTGACTGTGAGCATCCATTTCTGTGTTTGCTAGG  600
                                                        
seq2  --------------------------------------------------  0

seq1  CCCAGGCATTGTCTCACAAGAGACAGCTATATCAGGGTGCTTTCAGCAAA  650
                                                        
seq2  --------------------------------------------------  0

seq1  ATCTTGCTAGTGCATGCAATGGTGTCAGTGCTTGGAGGCTGATTATGGGA  700
                                                        
seq2  --------------------------------------------------  0

seq1  TGGATCCCTGGATATGGCATTCTCTAGATGGCCCATCCTTTAGTCTCAGC  750
                                                        
seq2  --------------------------------------------------  0

seq1  TCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAATTC  800
                                                        
seq2  --------------------------------------------------  0

seq1  TAAGAAGGGGCAAAGTGTCCACACTTTGGTCTTTGTTCTTCTTGAGTTTC  850
                                                        
seq2  --------------------------------------------------  0

seq1  ATGTGTTTTGCAAATTGTATCTTATATCTTGAGTATGCTAAGTTTCTGGG  900
                                                        
seq2  --------------------------------------------------  0

seq1  CTAATATCCACTTATCAGTGAGAACATACCATTTGAGTTCTTTTGTGATT  950
                                                        
seq2  --------------------------------------------------  0

seq1  GGGTTACCTCACTAAGGATGATGCCCTCCAGGTCCAACCATTTGCCTAGG  1000
                                                        
seq2  --------------------------------------------------  0

seq1  AATTTCATAAATTCATTCTTTTTAATAGCTAAATAGTACTCCATTGTGTA  1050
                                                        
seq2  --------------------------------------------------  0

seq1  AATGTACCACATTTTTTGTATCCATTCCTCTTTTGAGGGGCATCTGGGTT  1100
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTCCAACTTCTGGTTATTATAAATAAGGCTGCTATGAATGTAGTGGAG  1150
                                                        
seq2  --------------------------------------------------  0

seq1  CATGTATCTTTCTTACCAGTTGGAACATCTTCTGGATATATGCCCAGGAG  1200
                                                        
seq2  --------------------------------------------------  0

seq1  AGGTATTGCAGGATCCTCAGGTAGTACTATGTCCACTTTTCTGAGGAACC  1250
                                                        
seq2  --------------------------------------------------  0

seq1  GCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCAACAACAG  1300
                                                        
seq2  --------------------------------------------------  0

seq1  TGGAGGAGTGTTCCTCTTTCTCCACATCGTCGCCAGCATCTGCTGTCACC  1350
                                                        
seq2  --------------------------------------------------  0

seq1  TGAATTTTTGATCTTAGTCATTCTGACTGGTGTGAGATGGAATCTCGGGG  1400
                                                        
seq2  --------------------------------------------------  0

seq1  TTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGCTGAGCATTTTTTC  1450
                                                        
seq2  --------------------------------------------------  0

seq1  AGGTGGTTCTCAGCCATTTGGTATTCCTCAGGTGAGAATTCTTTCTTTAG  1500
                                                        
seq2  --------------------------------------------------  0

seq1  ATCTGAGCCCCATTTTTTAATACGGTTATTTGATTTTCTGGAGTCCACCT  1550
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTGAGTTCTTTATATATATTGGATAATAGTCGCCTATCTGATTTAGGA  1600
                                                        
seq2  --------------------------------------------------  0

seq1  TAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCATTTTGTCTTATAGAC  1650
                                                        
seq2  --------------------------------------------------  0

seq1  GGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTTATGAGGTCCCATTTGT  1700
                                                        
seq2  --------------------------------------------------  0

seq1  CAATTCTCTATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGCATTTC  1750
                                                        
seq2  --------------------------------------------------  0

seq1  TCCCCTGTGCCCATATTTCGAGGCTTTTCCCCACTTTCTCCTCTATAAGT  1800
                                                        
seq2  --------------------------------------------------  0

seq1  TTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGGTCCACTTAGATTTGAC  1850
                                                        
seq2  --------------------------------------------------  0

seq1  CTTATTACAAGGAGATAGGAATGGATCAATTCGCATTCTTCTACGTGATA  1900
                                                        
seq2  --------------------------------------------------  0

seq1  ACCACCAGTTGTGCCAGAACCATTTGTTGAAAATGCTGTCTTTTTCCACT  1950
                                                        
seq2  --------------------------------------------------  0

seq1  GGATGGTTTTTGCTCCCTTGTCAAAGATCAAGTGACCATAGACGTGTGGG  2000
                                                        
seq2  --------------------------------------------------  0

seq1  TACATTTCTGGGTCTTCAATTCTATTCCATTGCTTTACTTGTCTGTCGCT  2050
                                                        
seq2  --------------------------------------------------  0

seq1  ATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGCTTTA  2100
                                                        
seq2  --------------------------------------------------  0

seq1  GGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGAGTT  2150
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGATATCCTAAGTTTTTTGTTATTCCAGATGAATTTGCAGATTGCTCT  2200
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTAATTCGTTGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGA  2250
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTGTAGATTGCTTTCGACAGGATAGCCCTGTTTACTATATTGATCCTG  2300
                                                        
seq2  --------------------------------------------------  0

seq1  CCGATCCATGAGGATGGGAGATCTTTCCATCTTCTGAGATCTTCTTTAAG  2350
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTTTCTTCAGAGACTTGAAGTTCTTATCATACAGATCTTTCACTTCCT  2400
                                                        
seq2  --------------------------------------------------  0

seq1  TAGTTAGAGTCACACGAAGGTACTATATATTATTTGTGACTATTGAGAAG  2450
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTTGTTTCACTAATTTCTTTCTCAGCCTGTTTATTCTTTGTGTAGAG  2500
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGGCCATTGACTTGTTTGAGTTAATTTTATATCCAGCTACTTCACCGA  2550
                                                        
seq2  --------------------------------------------------  0

seq1  AGCTGTTTATCAGGTTTAGGAGTTCTCTGGTGGAATTTTTAGGGTCACTT  2600
                                                        
seq2  --------------------------------------------------  0

seq1  ATATATACTATTATATCATCTGCAAAAAGGGATATTTTGACTTCTTCCTT  2650
                                                        
seq2  --------------------------------------------------  0

seq1  TCCAATTTGTATCCCCTTGATCTCCTTTTGTTGTCAAATTGCTCTGGCTA  2700
                                                        
seq2  --------------------------------------------------  0

seq1  GGACTTCAGGTACAATGTTGAATAGGTAGGGAGAGAGTGGGCAGCCTTGT  2750
                                                        
seq2  --------------------------------------------------  0

seq1  CTAGTCCCTGATTTTAGTGGGATTGCTTCCAGCTCCTCACCATTTACTTT  2800
                                                        
seq2  --------------------------------------------------  0

seq1  GATGTTGGCTACTGGTTTGCTGTAGATTGCTTTTATCATGTTTAAGTATG  2850
                                                        
seq2  --------------------------------------------------  0

seq1  GGCCTTGAATTCCTGATCTTTCCAAGACTTTTATCATGAATGGGTGTTGG  2900
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTTGTCAAATGCTTTCTCCACATCAAACCAGATGATCATGTGGTTTTT  2950
                                                        
seq2  --------------------------------------------------  0

seq1  GTCTTTGAGTTTGTTTATATAGTGGATTATGCTGATGGATTTCCGTATAT  3000
                                                        
seq2  --------------------------------------------------  0

seq1  TAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCAGGATGAATG  3050
                                                        
seq2  --------------------------------------------------  0

seq1  ATTGTTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGTTT  3100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTTTTTTTTGCATCGGTATTCATAAGGGAAATTGGTCTGAAGTTCT  3150
                                                        
seq2  --------------------------------------------------  0

seq1  CTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATTGTGGCT  3200
                                                        
seq2  --------------------------------------------------  0

seq1  TCATAGAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGGAATAG  3250
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGTGAAGAACTAGAATTAGATCTTCTTTGAGGGTCTGATAGAACTCTG  3300
                                                        
seq2  --------------------------------------------------  0

seq1  CACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATG  3350
                                                        
seq2  --------------------------------------------------  0

seq1  ACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGATTGTTAACTTG  3400
                                                        
seq2  --------------------------------------------------  0

seq1  ATCCTGACTTAACTTTGGTACCTTGTATCTGTCTAGAAATTTGTCCATTT  3450
                                                        
seq2  --------------------------------------------------  0

seq1  CGTCCAGGTTTTCTAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTG  3500
                                                        
seq2  --------------------------------------------------  0

seq1  ATGGTGTTTTGGATTTCTTCAGGATTTGTTGTTATGTCTCCCTTTTCATT  3550
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGATTTTGTTAATTAGGATGCTGTCCCTGTGCCCTCTAGTGAGTCTGG  3600
                                                        
seq2  --------------------------------------------------  0

seq1  CTAAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAACCAGCTCCTCATT  3650
                                                        
seq2  --------------------------------------------------  0

seq1  TGGTTGATTCTTTGAATAGTTCTTGTTTCCACTTGGTTGATTTCGCCCCT  3700
                                                        
seq2  --------------------------------------------------  0

seq1  GAGTTTGATTATTTCCTGCCGTCTACTCCTCTTGGGTGAATTTCCTTCCT  3750
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTCTAGAGCTTTTAGGTGTGTTGTCAAGCTGCTAGTGTGTGCTCTC  3800
                                                        
seq2  --------------------------------------------------  0

seq1  TCTAGTTTCTTTTTGGAGGCACTCAGAGCTATGAGTTTCCCTCTTAGAAA  3850
                                                        
seq2  --------------------------------------------------  0

seq1  TGCTTTCATTGTGTCCCATACGTTTGGGTATGTTTTGTCTTCATTTTCAT  3900
                                                        
seq2  --------------------------------------------------  0

seq1  TAAACTCTAAAAGGTCTTTAATTTCTTTCTTTATTCCTTCCTTGAGCAAG  3950
                                                        
seq2  --------------------------------------------------  0

seq1  GTATCATTGAGAAGAGTGTTGTTCAATTTCCCCATGAATGTTGGTTTTCC  4000
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTTTTATGTTGTTATTGAAGATCATCCTTAGTCCATAGTGGTCTGATA  4050
                                                        
seq2  --------------------------------------------------  0

seq1  GGATGCATGGGAAAATTTCAATATTTTTGGATCTGTTGAGGCCTGTTTTG  4100
                                                        
seq2  --------------------------------------------------  0

seq1  TGGAAAATTATATGGTCAATTTTGGAGAATGTACCATGAGGTGCTGAGAA  4150
                                                        
seq2  --------------------------------------------------  0

seq1  GAAGGTATATCCTTTTGTTTTAGGATAAAATGTTCTATAGATATCTGTTA  4200
                                                        
seq2  --------------------------------------------------  0

seq1  AGTCCATTTGTTTCATAACTTCTGTTAGTGTCACTGTGTCCTTGTTTAGT  4250
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTGTTTCCACGACCTGTCCATTGATGAAAGTGGTGTGTTGAAGTCTCC  4300
                                                        
seq2  --------------------------------------------------  0

seq1  CACTATTATTGTGTGAGGTGCAATATGTGCTTTGAGCTTTCCTAAAGTTT  4350
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTAATGAATGTGGCTGCCCTTGCATTTGGAGCATAGATATTCAGATTT  4400
                                                        
seq2  --------------------------------------------------  0

seq1  GAGAGTTCCTCCTGGAGGATTTTACCTTTGATGCGTATGAAGTGTCCCTC  4450
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTTCTTTTTTGATAACTTTGTTTTGGAAGTCGATTTTATTCGATATCA  4500
                                                        
seq2  --------------------------------------------------  0

seq1  GAATGGCTACTCCAGCTTGTTTCTTCAGACCATTTGCTTGGAAAATTGTT  4550
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCAGCCTTTCACTCTGAGGTAGTGTCTGTCTTTTTCCCTGAGATGGGT  4600
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCTGTAAGCAGCAAAATGTTGGGTCCTGTTTGTGTAGCCAGTCTGTTA  4650
                                                        
seq2  --------------------------------------------------  0

seq1  GTCCATGTCTTTTTATTGGGGAATTGAGTCCATTGATATTAAGAGATATT  4700
                                                        
seq2  --------------------------------------------------  0

seq1  AAGGAAAAGTAATTGTTGCTTCCTATTATTTTTGTTGTTAGAGTTGGCAT  4750
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGTTATTGTGGCTGTCTTCTTTTCGGTTTGTTGAAGGATTACTTTCTT  4800
                                                        
seq2  --------------------------------------------------  0

seq1  GCTTTTTCTAGGTCGTGGTTTCTGTCCTTGTATTGGTTTTTTTCTATTAT  4850
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCCTTTGAAGGGCTGGATTTGTGGAAAGATAATGTGTGAATTTGGTTT  4900
                                                        
seq2  --------------------------------------------------  0

seq1  TGCCGTGAAATACTTTGGTTTCTCCATCTATGGTAATTGAGAGTGTGGCT  4950
                                                        
seq2  --------------------------------------------------  0

seq1  GGTTATAGTAGCCTGGGCTGGCATTTGTGTTCTTTTAGTGTCTGTATAAC  5000
                                                        
seq2  --------------------------------------------------  0

seq1  ATCTGTCCAGGATCTTCTGGCTTTCATAGTCTGGTGAAAAGTCTGGTGTA  5050
                                                        
seq2  --------------------------------------------------  0

seq1  ATTCTGATAGGCCTGCCTTTATATGTTATTTGACCTTTTCCCCTTACTGC  5100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTAATATTCTATCTTTATTTAGTGCATTTGTTGTTCTGATTATTATAT  5150
                                                        
seq2  --------------------------------------------------  0

seq1  GTCAGGAGGAATTTCTTTTCTGGTTCAGTCTATTTGGAGTTCTGTAGGCT  5200
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTGTATGTTCATGGGCATGTCTTTCTTTAGGTTTGGGAAGTTTTCTTC  5250
                                                        
seq2  --------------------------------------------------  0

seq1  TATAATTTTGTTGAAGATATTTACTGACCCTTTAAGTTGAAAATCTTCAT  5300
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCATCTACTCCTATTATCCGTAGGTTTGGTCTTCTCATTGTGTCCTGG  5350
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTCCTGGATGTTTTGAGTTAGGATCTTTTTGCATTTTGTATTTTCTTT  5400
                                                        
seq2  --------------------------------------------------  0

seq1  GATTTTTGTGCCGATGTTCTCTATGGAATCTTCTGCACCTGAGATTCTCT  5450
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCCATCTCTTCTATTCTTTTGCTAATGCTCGCATCTATGGTTCCAGAT  5500
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTTTCCTAGGGTTTCTATCTCCAGTGTTGCCCTACTTTGGGTTTTCCT  5550
                                                        
seq2  --------------------------------------------------  0

seq1  TATTGTGTCTACTTCCCTTTTTAGGTCTTGGATGGTTTTATTCAATTCCA  5600
                                                        
seq2  --------------------------------------------------  0

seq1  TCAACTGTTTGGGCGTGTTTTCCTGCAATTCTTTAAGGAATTTTTGTGCT  5650
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTCTTTAAGGTCTTCTACCTGTTTAGCAGTGTTCTCCTTTATTTCTTT  5700
                                                        
seq2  --------------------------------------------------  0

seq1  AAGTGAGTTATTAAAGTCCTTCTTGATGTCCTCTACCATCATATAAGTTA  5750
                                                        
seq2  --------------------------------------------------  0

seq1  AATCCAGGTCTATCTTTTCAGGTGTGTTGGGGTGCCCAGGACTGGGTGGG  5800
                                                        
seq2  --------------------------------------------------  0

seq1  GTGGGAGTGCTGTGTTCTGATGATGGTGAGTGGCCTTGGTTTCTGTTAGT  5850
                                                        
seq2  --------------------------------------------------  0

seq1  AAGATTCTTATGTTTGCCTTTTGCCATCTGGTAATCTCTGGAGTTAGGTT  5900
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTGTTGTTGTTTTGTTTTGTTTTGTTTTGTTTTTTCGAGACAGGGTT  5950
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCTGTATAGCTCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGG  6000
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAA  6050
                                                        
seq2  --------------------------------------------------  0

seq1  AGGCGTGCACCACCACGACCAGCTTGTTTTTTGTTTTTTGATTTTTTTTT  6100
                                                     || 
seq2  -----------------------------------------------TTC  3

seq1  TGTAGGAGTTAGTTGTTAT-AGTTGTCTCT--GGTTAGAGCTTGTTCCTC  6147
        ||    |||| |||||| | |   || |  |  |  || ||| |   |
seq2  CATA----TTAGGTGTTATGAATAAGCTTTGAGAATCTAGGTTGGTGGGC  49

seq1  AGGTGATTGATTA-TGTTAGCCTCTATCAGCAGACCTGCGAGACTAGCTT  6196
      |||   | | |||  | ||  |||||  |  | | |        | ||||
seq2  AGGAACTAGGTTACGGGTACACTCTA--AATATATC-------ATTGCTT  90

seq1  TCTCCTGAGTTTCAGTGGTCAGAGTACTCTCTGCAGGCAAGCTCTCCTCT  6246
       |       ||||| |||            ||| |  |||          
seq2  GC-------TTTCA-TGG------------CTGTA--CAA----------  108

seq1  TCCAGGGACGTTGCCCAGATATCTGGTGTTCGAACCTGCCTCCTGGCAGA  6296
             |||||| | ||||  ||||| |         | |  ||     
seq2  -------ACGTTGTCAAGATTCCTGGTAT---------CATTTTGCATTT  142

seq1  AGTTGTGTTCCACTCACCAGAGGTCCTACGATCCTGTGGAGAGTCCTGTG  6346
      | || | ||      |  | | |   ||| ||  | || |          
seq2  AATTTTTTT------AAAATATGGTTTACCATTTTATGTA----------  176

seq1  GGGACCTTGGTGGTGTCCTCAGACTCGCGCCCAAGGTGAGTCAGTGCTGG  6396
             ||| | |||                      | | | | |   
seq2  ------ATGGAGTTGT----------------------ATTTATTTCATC  198

seq1  CTCCAAACAGAAGGGACCGAATAG-TCAATTCTTGATGTGAAATTTCAAG  6445
       |                |||| | |||||||||||| ||||||||||||
seq2  TT---------------TGAATCGTTCAATTCTTGATATGAAATTTCAAG  233

seq1  AAGAATTCAATCTTTGTTCTTCACATAAAACCTGGGAGAAGTTCAACAAA  6495
      ||||||||||||||||||||||| | | ||||||||||||||||||||||
seq2  AAGAATTCAATCTTTGTTCTTCAGACAGAACCTGGGAGAAGTTCAACAAA  283

seq1  AAGAAT--GTGTGTCTCTGCTAAACATGCCACAGGTCAGTGTCCTTTCCA  6543
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAGTGTGTCTCTGCTAAACATGCCACAGGTCAGTGTCCTTTCCA  333

seq1  CATTTCTTTTTTTTAAAAAAAAAAA------AACTTTTAATTCAAATCAT  6587
      ||||||||||    |||||||||||      ||||||| |||||||||||
seq2  CATTTCTTTTAAAAAAAAAAAAAAAAAACCCAACTTTTTATTCAAATCAT  383

seq1  CCAAAAGTTTTATTCTCCATATATGGAATGTTATCTAAAGAACTTATTTT  6637
      ||||| ||||||||||||| ||||||||| ||||||||||  || |||||
seq2  CCAAATGTTTTATTCTCCACATATGGAATATTATCTAAAGGGCTCATTTT  433

seq1  CTATGATCTTTATTTTCTTCTGTAATAATGAAAATTTAATGTTTTGGTCT  6687
       || ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTACGATCTTTATTTTCTTCTGTAATAGTGAAAATTTAATGTTTTGGTCT  483

seq1  TTCATGTATATAACATCTTTATATTTTAACTTGATTTTATATTGTGAGGA  6737
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  TTCATGTATACATCATCTTTATATTTTAACTTGATTTTATATTGTGAGGA  533

seq1  CATATAATTCCCTTGGACTAGCTACCTGCATGTCTCAAAAAGGATCTATT  6787
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  CATATAATTCCCTTGGACTAGATACCTGCATGTTTCAAAAAGGATCTATT  583

seq1  GGAATGATGCTCAAAGAACATATTGATGGATAGTTTCTATGCTGAATAAG  6837
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  GGAATGATGCTCAAAGAACATATTGATGGATATTTTCTATGTTGAATAAG  633

seq1  TTCTGTCCTTTTATGTTAGTGTGAAGTAAGGTCTCTTCTGCCATATAAAT  6887
      |||||||||||| | |||||||||||||||||||||| ||| | ||||||
seq2  TTCTGTCCTTTTGTATTAGTGTGAAGTAAGGTCTCTTGTGCTACATAAAT  683

seq1  TGCATTTCAGGGATGCTCAGGTTTCTAAAACACAAGCTTGTGAATGAGGA  6937
       |||||||||||| | ||||||||||        ||||||||||||||||
seq2  GGCATTTCAGGGAAGGTCAGGTTTCT--------AGCTTGTGAATGAGGA  725

seq1  TATAGAAATAAGTATAAATTCACATCACTAAAGAAGATATGAAAGAGTAG  6987
      |          ||| |||||||||||||||||||||||||||||||||||
seq2  T----------GTAAAAATTCACATCACTAAAGAAGATATGAAAGAGTAG  765

seq1  AATTTGTAGAAGCTAAAATTACATGAAATCCACTGTCTTAAATACTAATA  7037
      |||||||||||  |||||||| | || ||||||||| || ||| ||||||
seq2  AATTTGTAGAAAGTAAAATTATAAGAGATCCACTGTTTTGAATCCTAATA  815

seq1  GTAAATATATTATTAGCTCCCTAGGGTCACAAATGATGGAAGGAAAATGT  7087
      ||||||||||||||| |||||||| |||||| ||||||||||||||||||
seq2  GTAAATATATTATTAACTCCCTAGAGTCACAGATGATGGAAGGAAAATGT  865

seq1  CTTTCTTTTACCATTATTGTGATTGTGAGCTGATATAGATTTCAGTATTC  7137
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  CTTTCTTTTGCCATTATTGTGATTGTGAGCTGATACAGATTTCAGTATTC  915

seq1  TCACAACTCTTTTTTCATGGCTCATATCACACAGTAATCACTGTTGACAC  7187
      ||||||||||||||||||||||||| |||||||||||||||||||||| |
seq2  TCACAACTCTTTTTTCATGGCTCATGTCACACAGTAATCACTGTTGACGC  965

seq1  CTGAAATCTATTTGTCTCAAGAGAGATACTGTCCCTGTGGTAAATTTTCA  7237
      ||||||||   ||||||| ||||||| ||||||||||| |  |||  |||
seq2  CTGAAATCGTATTGTCTC-AGAGAGAAACTGTCCCTGTCGCTAATGATCA  1014

seq1  ATATAGAAATTGTTATTTTCCTCTC  7262
      ||||||||||   ||||||||||||
seq2  ATATAGAAAT--GTATTTTCCTCTC  1037

seq1: chr4_145038941_145040011
seq2: B6Ng01-078D06.g_127_1182 (reverse)

seq1  TGCAAAGCCCTTCAG--CTTCTTCAGTCCTTACCTTAACTCCTTCATTTT  48
      ||||||  |||||||   |||| |||||  |||| |||||| |||| |||
seq2  TGCAAA--CCTTCAGGCTTTCTACAGTC--TACC-TAACTCTTTCA-TTT  44

seq1  AGTCCCCTTGCTCAGTCCAATGGTTGGTACAGGTTCTGCATCTCTTTGGT  98
      ||||||| || |||||| ||||    ||||  | ||||||||||||||  
seq2  AGTCCCC-TGGTCAGTCAAATG---TGTACCAG-TCTGCATCTCTTTGTA  89

seq1  CCAGTCTCTGAATGGCCTTACCTTCAGCCTCTTTTCCATTCTTTGTCCCT  148
      |||||||||||   | |||| | |||||||||||||||||| ||||||||
seq2  CCAGTCTCTGA--TGTCTTA-CATCAGCCTCTTTTCCATTC-TTGTCCCT  135

seq1  CTTTTTCTTTAAGAGAGGAGCAATTTTGGGTCATTATATTTGAGGTGGGT  198
      |||||   |||||||| |||||||| ||||||||||||||||||||||||
seq2  CTTTT--CTTAAGAGA-GAGCAATTCTGGGTCATTATATTTGAGGTGGGT  182

seq1  ATGATGTCAAATTTGAAAATAAAAGTTGGCAGGCTTTTATCATTTCCAGT  248
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGATGTCAAATTTGAAAATAAAATTTGGCAGGCTTTTATCATTTCCAGT  232

seq1  CATTTGATATAAATCATATTTGAGGTTCTTCTGAGGATACATGTAATGAT  298
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CATTTGATATAAATAATATTTGAGGTTCTTCTGAGGATACATGTAATGAT  282

seq1  TCAAAAAAAAGGAAAAAAAACCTCTTTTGAGAGTACAAATCCATGAGATC  348
        ||||||||   ||||||||||||||||||||||| |||||||||||||
seq2  AAAAAAAAAAAAGAAAAAAACCTCTTTTGAGAGTACGAATCCATGAGATC  332

seq1  ACTGATTATTGAATCCCTTACTCCTTATAT-AAGTAAATCATGTCACCTC  397
      |||||||||||||| ||||| ||||||||| |||||||||||||||||||
seq2  ACTGATTATTGAATTCCTTAGTCCTTATATAAAGTAAATCATGTCACCTC  382

seq1  TAATTGCCCCCCACCCGTTTTTTTTTTTTCAGGAAATCATTGCATATATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCCCCCCACCCGTTTTTTTTTTTTCAGGAAATCATTGCATATATG  432

seq1  GAATGTATGGGAAGGTCATGGATCAAGACAGCCAGTACATTGTTCTTGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTATGGGAAGGTCATGGATCAAGACAGCCAGTACATTGTTCTTGAA  482

seq1  CACATGAATATTCAAGAGAAGTCTTCTAAATGTAACAAGCCTAGCAATGT  547
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CACATGAATATTCAAGAGAAGTCTTCTAAATGTAACAAGCTTAGCAATGT  532

seq1  GTTTCTAGAATCCCCCCATTATACACCTCACAAATGTACTGAATGTGACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAGAATCCCCCCATTATACACCTCACAAATGTACTGAATGTGACA  582

seq1  AATGCTTTTCCCAAAAATCTCATCTTAATATTCATCAGAAAATTCATGCA  647
      |||||||||||| ||||||||||||||||| |||||||||| ||||||||
seq2  AATGCTTTTCCCCAAAATCTCATCTTAATAATCATCAGAAACTTCATGCA  632

seq1  GGAGAGAAACCTTACAAATGCAGTGGATGTGACAAATGCTTTACTGAAAA  697
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGAGAGAAACCTTACAAATGCAGTGGATGTGACAAGTGCTTTACTGAAAA  682

seq1  AGGCAGTCTGAGAAGGCATCAGAGAATTCATACAGGAGAGAAACCTTACA  747
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGGCACTCTGAGAAGGCATCAGAGAATTCATACAGGAGAAAAACCTTACA  732

seq1  AATGCAGTGAATGTGACAAATGCTTTACTAGAAAAGGCACTCTGAGAATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGTGAATGTGACAAATGCTTTACTAGAAAAGGCACTCTGAGAATT  782

seq1  CATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGA  832

seq1  CAAATGCTTTACCCAAAAATTTAATTTGAGATCTCATCAGAGAATTCATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTTTACCCAAAAATTTAATTTGAGATCTCATCAGAGAATTCATA  882

seq1  CAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAATTGCTTTACTGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAATTGCTTTACTGAA  932

seq1  AAAGGCAATCTGAGAAGGCATCAGAGAATTCATACAGGAGAGAAACCTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAATCTGAGAAGGCATCAGAGAATTCATACAGGAGAGAAACCTTA  982

seq1  CAAATGTAGTGAATGTGACAAATTCTTTACCCGAAAATCCCATCTTAGTA  1047
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAAATGTAGTGAAAGTGACAAATTCTTTACCCGAAAATCCCATCTTAGTA  1032

seq1  TTCATCAGAAATTTCATACAGGAG  1071
      ||||||||||||||||||||||||
seq2  TTCATCAGAAATTTCATACAGGAG  1056