This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
B6Ng01-078G19
Chromosome
4 (Build37)
Map Location
80,564,134 - 80,564,949
singlet/doublet
singlet
Overlap gene
D4Bwg0951e
Upstream gene
Tyrp1
Downstream gene
Mpdz
,
LOC100040131
,
LOC100040144
,
EG668895
Link
Open Mouse BAC browser
Click to get alignment info.
name
Tyrp1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:22178
MGI:98881
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
D4Bwg0951e
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:52829
MGI:106510
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Mpdz
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:17475
MGI:1343489
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100040131
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100040131
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
pseudo
: _no_value
name
LOC100040144
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100040144
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
name
EG668895
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:668895
MGI:3643976
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
pseudo
: _no_value
name
Tyrp1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:50233911
GeneID:22178
MGI:98881
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: tyrosinase-related protein 1
transcript_id
: NM_031202.2
name
D4Bwg0951e
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142367576
GeneID:52829
MGI:106510
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: DNA segment, Chr 4, Brigham & Women's Genetics 0951 expressed
transcript_id
: NM_026821.3
name
Mpdz
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124053456
GeneID:17475
MGI:1343489
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: multiple PDZ domain protein
transcript_id
: NM_010820.2
name
LOC100040144
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149252590
GeneID:100040144
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
product
: hypothetical protein LOC100040144
transcript_id
: XM_001474158.1
name
Tyrp1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:13654241
CCDS:CCDS18290.1
GeneID:22178
MGI:98881
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0042470 - melanosome [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005507 - copper ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004497 - monooxygenase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0046982 - protein heterodimerization activity [Evidence IDA]; GO:0042803 - protein homodimerization activity [Evidence IDA]
GO_process
: GO:0006583 - melanin biosynthesis from tyrosine [Evidence TAS] [Evidence IDA]; GO:0008152 - metabolism [Evidence IEA]; GO:0043473 - pigmentation [Evidence IMP]
codon_start
: 1
note
: iris stromal atrophy; tyrosinase related protein
product
: tyrosinase-related protein 1
protein_id
: NP_112479.1
name
D4Bwg0951e
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31044436
CCDS:CCDS18291.1
GeneID:52829
MGI:106510
definition
codon_start
: 1
note
: amplimer WI-13707, mouse homolog
product
: hypothetical protein LOC52829
protein_id
: NP_081097.2
name
Mpdz
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124053457
CCDS:CCDS18292.1
GeneID:17475
MGI:1343489
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]; GO:0045202 - synapse [Evidence IEA]; GO:0019717 - synaptosome [Evidence IEA]; GO:0005923 - tight junction [Evidence IDA]
GO_function
: GO:0005515 - protein binding [Evidence IPI]
GO_process
: GO:0007155 - cell adhesion [Evidence IDA]
codon_start
: 1
product
: multiple PDZ domain protein
protein_id
: NP_034950.2
name
LOC100040144
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149252591
GeneID:100040144
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001474208.1
name
LOC100040131
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040131
definition
number
: 6
pseudo
: _no_value
name
LOC100040131
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040131
definition
number
: 5
pseudo
: _no_value
name
LOC100040131
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040131
definition
number
: 4
pseudo
: _no_value
name
LOC100040131
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040131
definition
number
: 3
pseudo
: _no_value
name
LOC100040131
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040131
definition
number
: 2
pseudo
: _no_value
name
LOC100040131
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040131
definition
number
: 1
pseudo
: _no_value
name
EG668895
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668895
definition
number
: 1
pseudo
: _no_value
clone name
MSMg01-348G02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-109F18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-531C01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-065D18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-056A18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-484F08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-484F09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-363P19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-409H16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-341A04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-341C16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-046O22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-384B24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-440A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-150L12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-409N20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-486O18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-280O13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-489I03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273M02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-497H12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-092E15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-468O08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-408B09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-542K09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-093D23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-104F21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-046L16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-279D14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-048H21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-361D01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-116B19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-531I11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-366G14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-475J22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-541I09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-322F01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-511A05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-437E12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-399B03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-394O05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-409B07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-144J14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-111L08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-356I09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-358P19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-149O21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-373E24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-147J02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-047F15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-473J23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-452K05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-057C14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-404F10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-336A01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-197E05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-500D17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-431O14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-155L19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-477F03
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-054H16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-397N17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-432D22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-363G21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-498B04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-182A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-318N13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-375J03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396D09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-513I04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-173P07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-438N15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-385L12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-332P20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-188I17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-387C17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-157C11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-370J10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-198L08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-267N11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-264O12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-053F10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-175F17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-310J03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-346A18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-149B18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-106O05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-049L18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-157L09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-123O17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-273P11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-065O09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-319N05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-146I05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-231I05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-080H10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-244K13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-042E08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-111E04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-102J23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-078M10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-034K09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-331J21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-322I02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-152B15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-248A20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-037M10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-299M11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-061L23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-296K01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-044O03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-111N13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-184N18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-124P14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-057A17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-253H13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-210P15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-077A12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-130D23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-296P01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-197G15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-131F14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-235O03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-049O23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-078G19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-152B21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-209J13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-145P03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-118F03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-098H14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-224L05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-236J02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-007I15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-184A02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-089I13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-339J15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-176H08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-048M14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-031K02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-019N21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-335C12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-243B24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-188O17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-014A06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-146P07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-155M17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-197L24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-076C18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-013I17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-273L21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-226I10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-185A04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-240I11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-159E24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-049B23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-261B04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-178M22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-108J20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-085G06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-058G13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-013I09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-034K15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-147B08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-108D15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-019B02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-153I16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-041N15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-006O11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-033F19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-046C16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-041I02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-050F13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-265A03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-126O13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-212P12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-324F01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-173O21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-284F02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-288P14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-102N12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-138G15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-289P20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-348E09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-176J20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-050F08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-128F10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-229K21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-143D02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-287L04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-135K12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-274J11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-270N16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-105F07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-075E22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-198N06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-040K11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-271D03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-190I12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-304L12
singlet/doublet
doublet
plural/unique
unique