BAC Information

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BAC

Clone NameB6Ng01-078L04
Chromosome4 (Build37)
Map Location 35,729,681 - 35,807,702
singlet/doubletdoublet
Overlap geneLingo2
Upstream geneZfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078L04.bB6Ng01-078L04.g
ACCDH894326DH894327
length1,2321,114
definitionDH894326|Mus musculus domesticus DNA, BAC clone: B6Ng01-078L04, 5' end.DH894327|Mus musculus domesticus DNA, BAC clone: B6Ng01-078L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,729,681 - 35,730,929)(35,806,567 - 35,807,702)
sequence
gaattcacaaagagctaaaggggaccccacaattctgaaaaagaagaata
ttgtagagttttagtttgaaaacttactacaaaatgatggtaatcaaaac
tgtgtgatatagtatagagatagtgacagaacagattgaaaatccagaaa
taaatccactgattttgttaagataatactaacataattcaaagaggaaa
cagtgctttttttgtttttacactagatacccatatgtttatgaacatat
taatagcaaaattcctagaaaaaaaaagtagaggtaagtcatcgtgaatt
tgattcagataaaaatttagttataatacctaaattatatgtgaagcggg
gaaaagacaaattggtctctaagtgcacatttttgctttatataatagta
gtgacaaagtgaacaggtgagccagagaacaaaagaaaacgtttataaat
catttatctgataagagagctatatctaggctatgtatggataccttttg
actttatattaaaaataaataataaaaactaaattaaaatgagtaaacat
tttgaacagacactttacacatatatttttttaaaaaatcatgaagtact
tgagtagatgtaaacataataaagtttcaggaaagagcaggcgaggagct
caagagtatgtgcttctactgtaacaaagacaatttaaaagatgatagaa
aatagcaccttttagtagaaacatgaaaacatgggattgctggtgagaat
ggataatttttggaagccaaccgaataaactcacagtgatgatggttatg
cagatcatatcatccagaaatccttacactatgtctatgccaagaccctt
acatgaatattcatagtactatttttatatcaaccaaaaagtacaaacca
tacaaatgtccatcaatagataaagggggagagtgatatatatacacaaa
gattattccatggcaatgaaatgttgaagtagtaactgtatgaaccctga
cacctgagctctgagatcagcttctcactgttgtaggggatcacttttaa
gcacgataactgtcttttcctaaatataatctacacagaagctcaatgta
taagtaaaaagaattcaattgcttttggaacaaaaatgaagctgcgagtc
tactgttgctctgactgctaatattcagaggatgttctagcaataaatct
ttttctgagactctgacactggggtttattgc
gaattctttatcattgtgtatatttgtattagcggtttttgtatgacaca
aacagttctgtttaaaaaaaaataccccatatattgccatcaaagagaat
cttgtttgagctacacatttttattcatagcttcgtttattcgtatgagt
cctctaaaattaaagggttcacattacctgttacaaaaaagaaaacacgc
aggattaaccacattggggaacacactggaggtcacacagctactatgag
gcagagctcacagttgctgactctgcatatatccaggactccatagaaag
atatatgggccttggtatctgaagggttgctacccactcatttgagcttt
tgaacactcttcttttttctttttccttttcatctttctctctcttttta
agtttaaattttacatttgtgcttaaggaaacatcagttgctgcatatca
ccatggaagccaaagacactttttatttcattttgagaatttgccattaa
aggtgatggcttccccataactgatgtgatagttacgtttgaaggaaacg
tgagtgtggaagaaactacagaaagcttagccagacctaagtttacctct
ccttccctctggggatatttggttttattggggagtattttcagttgtca
taaactgctggatctggtggcccaaagccaggaatgctgttaaatatccc
acaatgcacagatccatgaaagccctaatgtctgcagtgctgaagttgag
aagacctaccggatagccgtctactccactggacagggagagctaaacct
ggataacatggtgcattttatgttgtgccttgttgccatccgaccatact
gttcctttcccatttgagaagcccaaaggtctgggtctctcttctcagtc
ctatctcacccaagctagatgcacctatgctgagtaacttttcttgatca
tgcacatttactagatttacatatctgaactaaatttcatcactattatg
tatacatatttactagtactgtctctatatgtcatgatctgcatctactg
atagatacgaaaggacctcactatgcaatacccgaggataaggatcaata
tgaacaagaagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_35729681_35730929
seq2: B6Ng01-078L04.b_44_1275

seq1  GAATTCACAAAGAGCTAAAGGGGACCCCACAATTCTGAAAAAGAAGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAAGAGCTAAAGGGGACCCCACAATTCTGAAAAAGAAGAATA  50

seq1  TTGTAGAGTTTTAGTTTGAAAACTTACTACAAAATGATGGTAATCAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAGTTTTAGTTTGAAAACTTACTACAAAATGATGGTAATCAAAAC  100

seq1  TGTGTGATATAGTATAGAGATAGTGACAGAACAGATTGAAAATCCAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATATAGTATAGAGATAGTGACAGAACAGATTGAAAATCCAGAAA  150

seq1  TAAATCCACTGATTTTGTTAAGATAATACTAACATAATTCAAAGAGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCACTGATTTTGTTAAGATAATACTAACATAATTCAAAGAGGAAA  200

seq1  CAGTGCTTTTTTTGTTTTTACACTAGATACCCATATGTTTATGAACATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTTTTTTGTTTTTACACTAGATACCCATATGTTTATGAACATAT  250

seq1  TAATAGCAAAATTCCTAGAAAAAAAAAGTAGAGGTAAGTCATCGTGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCAAAATTCCTAGAAAAAAAAAGTAGAGGTAAGTCATCGTGAATT  300

seq1  TGATTCAGATAAAAATTTAGTTATAATACCTAAATTATATGTGAAGCGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAGATAAAAATTTAGTTATAATACCTAAATTATATGTGAAGCGGG  350

seq1  GAAAAGACAAATTGGTCTCTAAGTGCACATTTTTGCTTTATATAATAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACAAATTGGTCTCTAAGTGCACATTTTTGCTTTATATAATAGTA  400

seq1  GTGACAAAGTGAACAGGTGAGCCAGAGAACAAAAGAAAACGTTTATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAAGTGAACAGGTGAGCCAGAGAACAAAAGAAAACGTTTATAAAT  450

seq1  CATTTATCTGATAAGAGAGCTATATCTAGGCTATGTATGGATACCTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATCTGATAAGAGAGCTATATCTAGGCTATGTATGGATACCTTTTG  500

seq1  ACTTTATATTAAAAATAAATAATAAAAACTAAATTAAAATGAGTAAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATATTAAAAATAAATAATAAAAACTAAATTAAAATGAGTAAACAT  550

seq1  TTTGAACAGACACTTTACACATATATTTTTTTAAAAAATCATGAAGTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACAGACACTTTACACATATATTTTTTTAAAAAATCATGAAGTACT  600

seq1  TGAGTAGATGTAAACATAATAAAGTTTCAGGAAAGAGCAGGCGAGGAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGATGTAAACATAATAAAGTTTCAGGAAAGAGCAGGCGAGGAGCT  650

seq1  CAAGAGTATGTGCTTCTACTGTAACAAAGACAATTTAAAAGATGATAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTATGTGCTTCTACTGTAACAAAGACAATTTAAAAGATGATAGAA  700

seq1  AATAGCACCTTTTAGTAGAAACATGAAAACATGGGATTGCTGGTGAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCACCTTTTAGTAGAAACATGAAAACATGGGATTGCTGGTGAGAAT  750

seq1  GGATAATTTTTGGAAGCCAACCGAATAAACTCACAGTGATGATGGTTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATTTTTGGAAGCCAACCGAATAAACTCACAGTGATGATGGTTATG  800

seq1  CAGATCATATCATCCAGAAATCCTTACACTATGTCTATGCCAAGACCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCATATCATCCAGAAATCCTTACACTATGTCTATGCCAAGACCCTT  850

seq1  ACATGAATATTCATAGTACTATTTTTATATCAACCAAAAAGTACAAACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAATATTCATAGTACTATTTTTATATCAACCAAAAAGTACAAACCA  900

seq1  TACAAATGTCCATCAATAGATAAAGGGGGAGAGTGATATATATACACAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGTCCATCAATAGATAAAGGGGGAGAGTGATATATATACACAAA  950

seq1  GATTATTCCATGGCAATGAAATGTTGAAGTAGTAACTGTATGAACCCTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTCCATGGCAATGAAATGTTGAAGTAGTAACTGTATGAACCCTGA  1000

seq1  CACCTGAGCTCTGAGGATCAGCCTTCTCACTGTTGTAGGGGATCACTTTT  1050
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  CACCTGAGCTCTGA-GATCAG-CTTCTCACTGTTGTAGGGGATCACTTTT  1048

seq1  AAAGCACGATAACCTGTCTTTTCCCTAAATATAATCCTACACAGAGCCTC  1100
       ||||||||||| ||||||||| |||||||||||| |||||||||  |||
seq2  -AAGCACGATAA-CTGTCTTTT-CCTAAATATAAT-CTACACAGAAGCTC  1094

seq1  AATGTATAAAGTACAGAGAAATCCAATTGC-TATGGACCAAAAATGAAGC  1149
      ||||||| ||||| | || ||| ||||||| | |||| ||||||||||||
seq2  AATGTAT-AAGTAAAAAG-AATTCAATTGCTTTTGGAACAAAAATGAAGC  1142

seq1  TGCAGAGTCTACTGTGGCTCTGACTGCATAATTAATTCAAGAAGGATGTC  1199
      ||| ||||||||||| ||||||||||| ||||  |||||   ||||||| 
seq2  TGC-GAGTCTACTGTTGCTCTGACTGC-TAAT--ATTCA--GAGGATGTT  1186

seq1  CTAGC-ATATA-CTTTTCTTGAAAGGACTCTGGAACAACTGGTGTTTATT  1247
      ||||| ||| | |||||  |||   |||||||  || ||||| |||||||
seq2  CTAGCAATAAATCTTTTTCTGA---GACTCTG--AC-ACTGGGGTTTATT  1230

seq1  GC  1249
      ||
seq2  GC  1232

seq1: chr4_35806567_35807702
seq2: B6Ng01-078L04.g_67_1180 (reverse)

seq1  TATCTTTCTTGTTTCATTATTGATCTTTATCCCTCGGAGTATATGCATTA  50
      |||| |||||| |||| |||||||| |||| |||||| |||| |||| ||
seq2  TATC-TTCTTG-TTCA-TATTGATCCTTAT-CCTCGG-GTAT-TGCA-TA  43

seq1  GTGAGGTCCTATCTGTAATCTATCAAGTTAGATGCAGATCATGACATATA  100
      |||||||||| || || ||||||||   ||||||||||||||||||||||
seq2  GTGAGGTCCTTTC-GT-ATCTATCA--GTAGATGCAGATCATGACATATA  89

seq1  GGAGACAGTACTTAGTAAATTATGTATTACATAAATTAGTGATGAAAATT  150
       |||||||||| ||||||| |||||| |||||||  |||||||||||  |
seq2  -GAGACAGTAC-TAGTAAA-TATGTA-TACATAA--TAGTGATGAAA--T  131

seq1  TTAGTTCAGATATGTAAATTCTAGTAAATGTGGCATTGATCAAGAAAAGT  200
      |||||||||||||||||| |||||||||||| ||| ||||||||||||||
seq2  TTAGTTCAGATATGTAAA-TCTAGTAAATGT-GCA-TGATCAAGAAAAGT  178

seq1  TACTCAGCATAGGTGCATCTAGCTTGGGTGAGATAGGACTGAGAAGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGCATAGGTGCATCTAGCTTGGGTGAGATAGGACTGAGAAGAGAG  228

seq1  ACCCAGACCTTTGGGCTTCTCAAATGGGAAAGGAACAGTATGGTCGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGACCTTTGGGCTTCTCAAATGGGAAAGGAACAGTATGGTCGGATG  278

seq1  GCAACAAGGCACAACATAAAATGCACCATGTTATCCAGGTTTAGCTCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAAGGCACAACATAAAATGCACCATGTTATCCAGGTTTAGCTCTCC  328

seq1  CTGTCCAGTGGAGTAGACGGCTATCCGGTAGGTCTTCTCAACTTCAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAGTGGAGTAGACGGCTATCCGGTAGGTCTTCTCAACTTCAGCAC  378

seq1  TGCAGACATTAGGGCTTTCATGGATCTGTGCATTGTGGGATATTTAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACATTAGGGCTTTCATGGATCTGTGCATTGTGGGATATTTAACAG  428

seq1  CATTCCTGGCTTTGGGCCACCAGATCCAGCAGTTTATGACAACTGAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGGCTTTGGGCCACCAGATCCAGCAGTTTATGACAACTGAAAAT  478

seq1  ACTCCCCAATAAAACCAAATATCCCCAGAGGGAAGGAGAGGTAAACTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCAATAAAACCAAATATCCCCAGAGGGAAGGAGAGGTAAACTTAG  528

seq1  GTCTGGCTAAGCTTTCTGTAGTTTCTTCCACACTCACGTTTCCTTCAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCTAAGCTTTCTGTAGTTTCTTCCACACTCACGTTTCCTTCAAAC  578

seq1  GTAACTATCACATCAGTTATGGGGAAGCCATCACCTTTAATGGCAAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTATCACATCAGTTATGGGGAAGCCATCACCTTTAATGGCAAATTC  628

seq1  TCAAAATGAAATAAAAAGTGTCTTTGGCTTCCATGGTGATATGCAGCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGAAATAAAAAGTGTCTTTGGCTTCCATGGTGATATGCAGCAAC  678

seq1  TGATGTTTCCTTAAGCACAAATGTAAAATTTAAACTTAAAAAGAGAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTCCTTAAGCACAAATGTAAAATTTAAACTTAAAAAGAGAGAGA  728

seq1  AAGATGAAAAGGAAAAAGAAAAAAGAAGAGTGTTCAAAAGCTCAAATGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAAAAGGAAAAAGAAAAAAGAAGAGTGTTCAAAAGCTCAAATGAG  778

seq1  TGGGTAGCAACCCTTCAGATACCAAGGCCCATATATCTTTCTATGGAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGCAACCCTTCAGATACCAAGGCCCATATATCTTTCTATGGAGTC  828

seq1  CTGGATATATGCAGAGTCAGCAACTGTGAGCTCTGCCTCATAGTAGCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATATATGCAGAGTCAGCAACTGTGAGCTCTGCCTCATAGTAGCTGT  878

seq1  GTGACCTCCAGTGTGTTCCCCAATGTGGTTAATCCTGCGTGTTTTCTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTCCAGTGTGTTCCCCAATGTGGTTAATCCTGCGTGTTTTCTTTT  928

seq1  TTGTAACAGGTAATGTGAACCCTTTAATTTTAGAGGACTCATACGAATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACAGGTAATGTGAACCCTTTAATTTTAGAGGACTCATACGAATAA  978

seq1  ACGAAGCTATGAATAAAAATGTGTAGCTCAAACAAGATTCTCTTTGATGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGCTATGAATAAAAATGTGTAGCTCAAACAAGATTCTCTTTGATGG  1028

seq1  CAATATATGGGGTATTTTTTTTTAAACAGAACTGTTTGTGTCATACAAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATATGGGGTATTTTTTTTTAAACAGAACTGTTTGTGTCATACAAAA  1078

seq1  ACCGCTAATACAAATATACACAATGATAAAGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  ACCGCTAATACAAATATACACAATGATAAAGAATTC  1114