BAC Information

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BAC

Clone NameB6Ng01-078L08
Chromosome4 (Build37)
Map Location 121,883,433 - 121,884,634
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000008911, EG666914, LOC666921, LOC666927, LOC666931, LOC666937
Downstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078L08.bB6Ng01-078L08.g
ACCDH894334DH894335
length1,1701,177
definitionDH894334|Mus musculus domesticus DNA, BAC clone: B6Ng01-078L08, 5' end.DH894335|Mus musculus domesticus DNA, BAC clone: B6Ng01-078L08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacccgaggaataccgaatggcagagaagcacctgaataaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacatcagtcagaatggctaagaacaaaaattcaggtgacagc
agatgctggcaaggatgtagagaaagatgaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaactggtaagaaggacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcca
atggatggatctggagggcatcatcctgagtgaggtaacccaatcacaaa
ggaactcacacaatatgtactcactgaaagtttatattagcccagaaact
taggatacccaagatataagatacaatttgctaaacgcatgaaactcaag
aagaacgatgaccaaagcgtggactctttgtcccttcttagaattgggaa
caaaacatccatggaaggagttacagagacaaagtttggagttgtgacaa
aaggttggaccatctagagactgccatccataatccatccatcccataat
cagcttccaaatgctgacaccattgcatacactaacaagattttgctgaa
aggacccagatatagctgtctcttgtgagactatgtctgggcctagcaaa
cacagaagtggatgctcacagtcagtattggatggatcacagggccccaa
tggaggagctagcaaagtcccaggagctaaagggatctgcaaccctatag
gtggaacaacattatgaactaaccagtaccctgagctcttgactctagct
gcatatgtatcaaaagatggctagtcagccatcactggatagagagccat
gactcgcaacttatatgccagtacagggcacgccagcaaaatgggagtaa
tggtaaagaatattggagtg
gaattcttttcctcctgcactaggagctggtcattcccagcacaacataa
cattgtgagcagcagcctgagaattggtgagtgcagcagctatctgacat
gctccttgagccttgctgttgtagtcctgggagctgaggccaactccaaa
gtaatgtcaatatttacttactatgatttctcattgtggttttcttgaac
caactgtcaaaaattcagcctcaaactgtgttgtcaagatggataccagt
cttcacttctctaattccaatgtcagtgtctaggttgctcataaacgacc
tatgtacatttcatctaatgacctgctatcttccttttgttgtggttggg
tgagggtagtgctttgaattgggctattaatcaagactgcagaaattcac
tataatctcaatagtgactagataaaccatcctgaccttgaatgtgcagc
catctaccttcctcagcctccccagccctgggtttgcagctgccacccat
cacatcttgtttcctctagaaaggaacattttctttagtggtatccagga
cactgaactctcctgacctcactccacccctcaggatgatctctcattgc
ctatcttgggatctttcctggtaatccagtccacctccagaagatgatat
gccccaattactgtcattatgagacaagtagttctgacctaacatcctca
tctgtgtaaacacatctatagaaattcccagttgtgttaaaacaatatca
gatttacagaatctaaacctgcttgtaatttcatccctccagaggtggga
cacagggatactgagttcaaagtcagcaaggactccatactgagcattgt
gaattatatgaaaccctagagttttgaaagttgaagaaaaatacgaagtt
gtagatttattttgaaactctggtcttgtggctcctataatcccagcact
caaaggtggaggcaaagattcattgggaatttgaggttagccttgactaa
atagtgagaaccaacgacttggatacacagtaagaaaaaatttttctaaa
ttaaataccaaagaaaaagaaatgaatagagaccaggaattgaaaaaggt
ctctctttatatatatcagaaaaactggctccatagaaactatctcaaaa
tgaatatattctggcagatacatgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_121883433_121884634
seq2: B6Ng01-078L08.g_68_1244

seq1  GAATTCTTTTCCTCCTGCACTAGGAGCTGGTCATTCCCAGCACAACATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCCTCCTGCACTAGGAGCTGGTCATTCCCAGCACAACATAA  50

seq1  CATTGTGAGCAGCAGCCTGAGAATTGGTGAGTGCAGCAGCTATCTGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGAGCAGCAGCCTGAGAATTGGTGAGTGCAGCAGCTATCTGACAT  100

seq1  GCTCCTTGAGCCTTGCTGTTGTAGTCCTGGGAGCTGAGGCCAACTCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTGAGCCTTGCTGTTGTAGTCCTGGGAGCTGAGGCCAACTCCAAA  150

seq1  GTAATGTCAATATTTACTTACTATGATTTCTCATTGTGGTTTTCTTGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTCAATATTTACTTACTATGATTTCTCATTGTGGTTTTCTTGAAC  200

seq1  CAACTGTCAAAAATTCAGCCTCAAACTGTGTTGTCAAGATGGATACCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTCAAAAATTCAGCCTCAAACTGTGTTGTCAAGATGGATACCAGT  250

seq1  CTTCACTTCTCTAATTCCAATGTCAGTGTCTAGGTTGCTCATAAACGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTCTCTAATTCCAATGTCAGTGTCTAGGTTGCTCATAAACGACC  300

seq1  TATGTACATTTCATCTAATGACCTGCTATCTTCCTTTTGTTGTGGTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACATTTCATCTAATGACCTGCTATCTTCCTTTTGTTGTGGTTGGG  350

seq1  TGAGGGTAGTGCTTTGAATTGGGCTATTAATCAAGACTGCAGAAATTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTAGTGCTTTGAATTGGGCTATTAATCAAGACTGCAGAAATTCAC  400

seq1  TATAATCTCAATAGTGACTAGATAAACCATCCTGACCTTGAATGTGCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTCAATAGTGACTAGATAAACCATCCTGACCTTGAATGTGCAGC  450

seq1  CATCTACCTTCCTCAGCCTCCCCAGCCCTGGGTTTGCAGCTGCCACCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACCTTCCTCAGCCTCCCCAGCCCTGGGTTTGCAGCTGCCACCCAT  500

seq1  CACATCTTGTTTCCTCTAGAAAGGAACATTTTCTTTAGTGGTATCCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTGTTTCCTCTAGAAAGGAACATTTTCTTTAGTGGTATCCAGGA  550

seq1  CACTGAACTCTCCTGACCTCACTCCACCCCTCAGGATGATCTCTCATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACTCTCCTGACCTCACTCCACCCCTCAGGATGATCTCTCATTGC  600

seq1  CTATCTTGGGATCTTTCCTGGTAATCCAGTCCACCTCCAGAAGATGATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTGGGATCTTTCCTGGTAATCCAGTCCACCTCCAGAAGATGATAT  650

seq1  GCCCCAATTACTGTCATTATGAGACAAGTAGTTCTGACCTAACATCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAATTACTGTCATTATGAGACAAGTAGTTCTGACCTAACATCCTCA  700

seq1  TCTGTGTAAACACATCTATAGAAATTCCCAGTTGTGTTAAAACAATATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTAAACACATCTATAGAAATTCCCAGTTGTGTTAAAACAATATCA  750

seq1  GATTTACAGAATCTAAACCTGCTTGTAATTTCATCCCTCCAGAGGTGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACAGAATCTAAACCTGCTTGTAATTTCATCCCTCCAGAGGTGGGA  800

seq1  CACAGGGATACTGAGTTCAAAGTCAGCAAGGACTCCATACTGAGCATTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGATACTGAGTTCAAAGTCAGCAAGGACTCCATACTGAGCATTGT  850

seq1  GAATTATATGAAACCCTAGAGTTTTGAAAGTTGAAGAAAAATACGAAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATATGAAACCCTAGAGTTTTGAAAGTTGAAGAAAAATACGAAGTT  900

seq1  GTAGATTTATTTTGAAACTCTGGTCTTGTGGCTCCTATAATCCCAGCACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTTATTTTGAAACTCTGGTCTTGTGGCTCCTATAATCCCAGCACT  950

seq1  CAAAGGTTGGAGGCAAAAGATTCATTGGGAATTTGAGGTTAGCCTTGACT  1000
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  CAAAGG-TGGAGGC-AAAGATTCATTGGGAATTTGAGGTTAGCCTTGACT  998

seq1  ACATAGTGAGAACCAACGACTTGGATACACAGTAAGAGAGAATCTGTCTT  1050
      | ||||||||||||||||||||||||||||||||||| | ||| | ||| 
seq2  AAATAGTGAGAACCAACGACTTGGATACACAGTAAGAAAAAATTTTTCT-  1047

seq1  AAAATAAAATAACAAAAAGAAAAAAAGAAAATGAAATAGAGACAAAGGAA  1100
       |||| ||||| |  |||||||||    ||||| ||||||||| |  | |
seq2  -AAATTAAATACC--AAAGAAAAA---GAAATG-AATAGAGACCA--GGA  1088

seq1  ATTGAAAAAAAGTTCATCCCTATATATATATATCAAGAAAAACTTGGCTC  1150
      |||||||||       || || | |||||||||| |||||||| ||||||
seq2  ATTGAAAAA-----GGTCTCTCTTTATATATATC-AGAAAAAC-TGGCTC  1131

seq1  CATTAGAAACTATCTCAAATAATGAAATTATTCTGGCATAGTACACATGA  1200
      || |||||||||||||||  ||||||  ||||||||||    | ||||||
seq2  CA-TAGAAACTATCTCAA--AATGAATATATTCTGGCA---GATACATGA  1175

seq1  CT  1202
      ||
seq2  CT  1177