BAC Information

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BAC

Clone NameB6Ng01-079A05
Chromosome4 (Build37)
Map Location 145,029,774 - 145,173,369
singlet/doubletdoublet
Overlap gene9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701
Upstream geneAadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282
Downstream geneOTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079A05.bB6Ng01-079A05.g
ACCDH894553DH894554
length1,1131,060
definitionDH894553|Mus musculus domesticus DNA, BAC clone: B6Ng01-079A05, 5' end.DH894554|Mus musculus domesticus DNA, BAC clone: B6Ng01-079A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,172,326 - 145,173,369)(145,029,774 - 145,030,841)
sequence
gaattctctacttcatgttccctgtgccttccatcctctgtgtctgttca
gttagtttaaatttgtaacttcctgaaggctgccttgagtatctctccct
ttctgtctgccttttgtctcgatgtttgtgtctacctgtgtaatctgttg
tctgtttgtatctctctggctggccttaatagagagctttggagtgtttc
tagaacatcaagggaaccatcacatgggggaaagaatgggatagtgaaca
ataatctttaacagagttttataaaggattaggtaactgggtccacatga
tcaagacaataaacatttataaacatgacttttatcaaccatacccataa
ctgtatatgcattttgaaatgtgctttaagcctctgtatttcatgctttc
agcaaatgactcacatgcagtttctgagcaggacatgaaaaagtacataa
attaccatttatcaacgcatcaagttagatcttttatataatacattgtc
acacttatggttctgccaatgcataggaaagcaccatgaagcaagacttc
atggagttctgctcgatgtattcttagtaagatgtttgcaaaaaaaaatt
ttttttgaaaagtacgactttataagtgtatgaagatgattcaaatgaag
tctttgaatactgaaggagatggagttccagttgatcttgtatttttcac
tgtgttacataaagtgagctgctagccaaagtggtttcataaaaataccc
aaagattgcaggacactgacaacaaaagaaagggcttgctttttataaac
tgacaataagtgttcattgctaaagacaggactgacacaactcattgtat
atgaagaggtcaaactggtgcctccaagaacattgactcttatattacag
tgtcctcattatgggaaggtgctttgcaagctacacaaagtgaaatatat
acacagaaccaccaaaagtctttgatctataatttctccttctccaaaat
atgctagtcaagatatcatgatttattgggaatactaatcaaagtctatt
tgactaaataccatagcactctggttaatgttaattattctatgataaac
agggttttgtgga
gaattcatttcttgtttcatttcagattgagcattccttagatttttata
cctctggatacaatgttcacatcttgcattatcataattatccctttagc
cactcataggagttctctggtctttcattaagtttgtttctgccttcttt
gaattcctgtgcttggtccctctttatgtcatttgaccacattgaatggt
gtccagagtatattttgacttccctctcttgagtttgtttcataattcat
tttgtcgtgagtattgctattgtattagtgatttgggtagggaaataata
ttaacattatcaaattgctttagctccagcctctaaattttcttttgctg
tgtgtcatttaggtcaggtggcaggggtttccatttgaggtgttgtgaat
aaactttgagaatctaggttggtgggcaggaactaggttacaggtacact
ctaaatatatcattacttgctttcatggctgtacaaacattgtcaagatt
cctggtatcattttgcatttaattttttaaaaatatggtttagcattgtc
tgtaatggagttgtatttatttcatctttgaatcgttcaattcttttttt
tcttttaaaatattttttattatgtattttcctcatttatatttccaatg
ctatcccaaaagtcccccataccctccccctcccactcccctacccaccc
actcctactttttggcactggcattcccctgtactggggcatataaagtt
tgcatgaccaatgggactctcttcccagtgatggccgactaggccatctt
ttgatacatatgcagctagagacaagagctccggggtactggttagttca
tattgttgttccacctatagggttgcagttccctatagctccttgggtac
tttctctagctcctccatgggggccctgtgatccatccatagctgactgt
gagcatcacttctgtgttgctagctccggcatagtcttcacaagagacag
ctatataggtgcttcagcaaatctactagtgtatgcatgtgtcagcgttg
gaggctgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145172326_145173369
seq2: B6Ng01-079A05.b_123_1156 (reverse)

seq1  TCCACACACCCTTGTTTATCATA-AATATATAACATTTAACCAGAGTGCT  49
      |||||| | || ||||||||||| ||||  ||||| ||||||||||||||
seq2  TCCACAAAACCCTGTTTATCATAGAATAATTAACA-TTAACCAGAGTGCT  49

seq1  ATTGGTATTTAAGTCAAATTAGACTTTGATTGGTTATTCCCAATAAATTC  99
      | |||||||| ||||||| |||||||||||| | ||||||||||||| ||
seq2  A-TGGTATTT-AGTCAAA-TAGACTTTGATTAG-TATTCCCAATAAA-TC  94

seq1  ATGATATCTTTGACCTAGCATATTTTGGAAGAACGAGAAAATATAGATCA  149
      |||||||| |||| |||||||||||||| |||| |||||| |||||||||
seq2  ATGATATC-TTGA-CTAGCATATTTTGG-AGAAGGAGAAATTATAGATCA  141

seq1  AAGACTTTTTTGGTTGGTTCTGTGTATATATTTCACTTTGTGTAGCTTGC  199
      |||||||||   | ||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTT---GGTGGTTCTGTGTATATATTTCACTTTGTGTAGCTTGC  188

seq1  AAAGCACTTTCCCATAACGAGGACACTGGAATATAAGAGTCAATGTTCTT  249
      ||||||| ||||||||| |||||||||| |||||||||||||||||||||
seq2  AAAGCACCTTCCCATAATGAGGACACTGTAATATAAGAGTCAATGTTCTT  238

seq1  GGAGGCACCAGTTTGACCACTTCATATACAATGAGTTGTGTCAGTCCTGT  299
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGAGGCACCAGTTTGACCTCTTCATATACAATGAGTTGTGTCAGTCCTGT  288

seq1  CTTTAGCAATGAACACTTATTGTCAGTTTATAAAAAGCAAGCCCTTTCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCAATGAACACTTATTGTCAGTTTATAAAAAGCAAGCCCTTTCTT  338

seq1  TTGTTGTCAGTGTCCTGCAATCTTTGGGTATTTTTATGAGACCACTTTGG  399
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTGTTGTCAGTGTCCTGCAATCTTTGGGTATTTTTATGAAACCACTTTGG  388

seq1  CTAGCAGCTCACTTTATGTAACACAGTGAAAAATACAAGATCAACTGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGCTCACTTTATGTAACACAGTGAAAAATACAAGATCAACTGGAA  438

seq1  CTCCATCTCCTTCAGTATTCAAAGACTTCATTTGAATCATCTTCATACAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTCCTTCAGTATTCAAAGACTTCATTTGAATCATCTTCATACAC  488

seq1  TTATAAAGTCGTACTTTTCAAAGAAAAAAATTTTTTTGCAAACATCTTAT  549
      |||||||||||||||||||||| |||||  ||||||||||||||||||| 
seq2  TTATAAAGTCGTACTTTTCAAA-AAAAATTTTTTTTTGCAAACATCTTAC  537

seq1  GAAGAATATATCGAGCAGAACTCCATGAAGTCTTGCTCCATGGTGCTTTC  599
       ||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  TAAGAATACATCGAGCAGAACTCCATGAAGTCTTGCTTCATGGTGCTTTC  587

seq1  CTATGCATTAGCAGAACCATAAGTGTGACAATGTATTATATAAAAGATCT  649
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCATTGGCAGAACCATAAGTGTGACAATGTATTATATAAAAGATCT  637

seq1  AACTTGATGCGTTGATAAATGATAATTTATGTACTTTTTCATGTCCTGCC  699
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  AACTTGATGCGTTGATAAATGGTAATTTATGTACTTTTTCATGTCCTGCT  687

seq1  CAGAAACTGCATGTGAGTCATTTACTGAAAGCATGAAATAC--AGGCTTA  747
      ||||||||||||||||||||||| |||||||||||||||||  |||||||
seq2  CAGAAACTGCATGTGAGTCATTTGCTGAAAGCATGAAATACAGAGGCTTA  737

seq1  AAGCACATTTCAAAATGCATAAACAGTTATGGGTATGGTTGATAAAAGTC  797
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAGCACATTTCAAAATGCATATACAGTTATGGGTATGGTTGATAAAAGTC  787

seq1  ATGTTTATAAATGTTTATTGTCTTGATCATGTGGACCCAGTTACCTAATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATAAATGTTTATTGTCTTGATCATGTGGACCCAGTTACCTAATC  837

seq1  CTTTATAAAACTCTGTTAAAGATTATTGTTCACTATCCCATTCTTTCCCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAAAACTCTGTTAAAGATTATTGTTCACTATCCCATTCTTTCCCC  887

seq1  CATGTGATGGTTCCCTTGATGTTCTAGAAACACTCCAAAGCTCTCTATTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGATGGTTCCCTTGATGTTCTAGAAACACTCCAAAGCTCTCTATTA  937

seq1  AGGTCAGCCAGAGAGATACAAACAGACAACAGATTACACAGGTAGACACA  997
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCAGAGAGATACAAACAGACAACAGATTACACAGGTAGACACA  987

seq1  AACATGGAGACAAAAGGCAGACAGAAAGGGAGAGATACTCAAGGCAG  1044
      ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AACATCGAGACAAAAGGCAGACAGAAAGGGAGAGATACTCAAGGCAG  1034

seq1: chr4_145029774_145030841
seq2: B6Ng01-079A05.g_71_1127

seq1  TTCATTTCGTGTTTCATTTCAGATTGAGCATTCCTTAGAGTTTTATACCT  50
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  TTCATTTCTTGTTTCATTTCAGATTGAGCATTCCTTAGATTTTTATACCT  50

seq1  CTGGATACAATGTTCACATCCTGCATTATCATAATTATTCCTTTAGCCAC  100
      |||||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  CTGGATACAATGTTCACATCTTGCATTATCATAATTATCCCTTTAGCCAC  100

seq1  TCACAGGAGTTATCTGGTCTTTCATTAAGTTTGTTTCTGCCTTCTTTGAA  150
      ||| ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGAGTTCTCTGGTCTTTCATTAAGTTTGTTTCTGCCTTCTTTGAA  150

seq1  TTCCTGTGATTGGT-CCTCTTTATGTCATTTGACCACATTGAATGGTGTT  199
      |||||||| ||||| |||||||||||||||||||||||||||||||||| 
seq2  TTCCTGTGCTTGGTCCCTCTTTATGTCATTTGACCACATTGAATGGTGTC  200

seq1  CAGAGTCTATTTTGACTTCTGTCTCTTGAGTTTGTTTCATAATTCATTTT  249
      |||||| ||||||||||||  |||||||||||||||||||||||||||||
seq2  CAGAGTATATTTTGACTTCCCTCTCTTGAGTTTGTTTCATAATTCATTTT  250

seq1  GTCATGAGTATTGCTATTATATTAGTGATTTGGGTAGGGAAATTTTATTA  299
      ||| |||||||||||||| ||||||||||||||||||||||||  |||||
seq2  GTCGTGAGTATTGCTATTGTATTAGTGATTTGGGTAGGGAAATAATATTA  300

seq1  ACATTATGAAATTGCTTTAGCTACAGCCTCTCAATTTTCTTTTCTTGTGT  349
      ||||||| |||||||||||||| |||||||| |||||||||||  |||||
seq2  ACATTATCAAATTGCTTTAGCTCCAGCCTCTAAATTTTCTTTTGCTGTGT  350

seq1  GTCATTTAGGTCAGGTGACAGGGATTTCCATATGAGGTGTTTTGAATAAA  399
      ||||||||||||||||| ||||| ||||||| ||||||||| ||||||||
seq2  GTCATTTAGGTCAGGTGGCAGGGGTTTCCATTTGAGGTGTTGTGAATAAA  400

seq1  CTTTGAGAATCTAGGTTGGTGGGCAGGAACTAGGTTACAGGTACACTCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGAATCTAGGTTGGTGGGCAGGAACTAGGTTACAGGTACACTCTA  450

seq1  AATATATCATTACTTGCTTTCGTGGCTGTACAAATGTTTTCTAGATTCCT  499
      ||||||||||||||||||||| ||||||||||||  || || ||||||||
seq2  AATATATCATTACTTGCTTTCATGGCTGTACAAACATTGTCAAGATTCCT  500

seq1  GGTATCATTTTGCATTTAATTTTTTTAAAATATGCTTTAGCATTGTCTGT  549
      ||||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  GGTATCATTTTGCATTTAATTTTTTAAAAATATGGTTTAGCATTGTCTGT  550

seq1  AGTGTAGTTGTATTTATTTCATCTTTGAATCGTTCAATTCTTTTTTTTCC  599
      | || ||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATGGAGTTGTATTTATTTCATCTTTGAATCGTTCAATTCTTTTTTTT-C  599

seq1  TTTTTTAATA-TTTTTATTAGGTATTTTCCTCATTTACATTTCCAATGCT  648
      ||||  |||| ||||||||| |||||||||||||||| ||||||||||||
seq2  TTTTAAAATATTTTTTATTATGTATTTTCCTCATTTATATTTCCAATGCT  649

seq1  ATCCCAAAAGTCCCCCATACCCTCCCCCCCCCACTTCCCTACCCACCCAC  698
      |||||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  ATCCCAAAAGTCCCCCATACCCTCCCCCTCCCACTCCCCTACCCACCCAC  699

seq1  TCCCACTTTTTGGCCCTGGCGTTCACTTGTACTGGGGCATATAAAGTTTG  748
      ||| |||||||||| ||||| ||| | |||||||||||||||||||||||
seq2  TCCTACTTTTTGGCACTGGCATTCCCCTGTACTGGGGCATATAAAGTTTG  749

seq1  CATGACCAATGGGACTCTCTTTCCAGTGATGGCCAACTAGGCCATCTTTT  798
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  CATGACCAATGGGACTCTCTTCCCAGTGATGGCCGACTAGGCCATCTTTT  799

seq1  GATACATATGTAGCTAGAGACAAGAGCTCCTGGGTACTGGTTAGTTCATA  848
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  GATACATATGCAGCTAGAGACAAGAGCTCCGGGGTACTGGTTAGTTCATA  849

seq1  TTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTCCTTGGGTACTT  898
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGTTGTTCCACCTATAGGGTTGCAGTTCCCTATAGCTCCTTGGGTACTT  899

seq1  TCTCTAGCTCCTACATTGGGGGCCTTGTGATCCATCCAATAGCTGACTGT  948
      |||||||||||| || |||||||| |||||||||||| ||||||||||||
seq2  TCTCTAGCTCCTCCA-TGGGGGCCCTGTGATCCATCC-ATAGCTGACTGT  947

seq1  GAGCATCCATTTCTGTGTTTGCTAGGCCCAGGCATTGTC-TCACAAGAGA  997
      |||||| || ||||||| |||||| || | ||||| ||| ||||||||||
seq2  GAGCAT-CACTTCTGTG-TTGCTA-GCTCCGGCATAGTCTTCACAAGAGA  994

seq1  CAGCTATATCAGGGTGCTTTCAGCAAAATCTTGCTAGTGCATGCAATGGT  1047
      |||||||||   ||||| |||||| ||||| | |||||| |||||   ||
seq2  CAGCTATAT--AGGTGC-TTCAGC-AAATC-TACTAGTGTATGCA--TGT  1037

seq1  GTCAGTGCTTGGAGGCTGATT  1068
      ||||| | |||||||||||||
seq2  GTCAGCG-TTGGAGGCTGATT  1057