BAC Information

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BAC

Clone NameB6Ng01-079E07
Chromosome4 (Build37)
Map Location 63,941,629 - 64,064,892
singlet/doubletdoublet
Overlap genenone
Upstream geneCol27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
Downstream genePappa, Astn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079E07.bB6Ng01-079E07.g
ACCDH894726DH894727
length1,1171,139
definitionDH894726|Mus musculus domesticus DNA, BAC clone: B6Ng01-079E07, 5' end.DH894727|Mus musculus domesticus DNA, BAC clone: B6Ng01-079E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,941,629 - 63,942,781)(64,063,734 - 64,064,892)
sequence
gaattcagactatgatatacgagtattgtgtatgtgtgtgtgtaatctag
aataatattatgtaccatataataaaaccatatattatatggtacatata
atatatctacatatgtcatgtatataaaaacatataacattaaagcagga
ggggagtatttgaaagcaaaaaagtaaccacccagagggagtggggaaca
agtagtagtgagatcattgtgagcaaagcaaaatgaaatagacatatgaa
aatgttataatgaaaccagtgccacacagtttttcaaaaattaaaaaagt
acctcatgctttattaaatgctctgttctcattcctttgaaattcttaaa
ttttcttttcaattaccacatggaaattaaatggccaatcctggtgacaa
gaatgggattttaggctttttgttcatgaaaagaaatttccattacacga
ctttaatcaaagagaatatgatctgagtcagacttcagaaactcaaatct
cagcttgttctggggagttggatgtgtgggagtctatggagaaaccctca
caaatgttgtctgttcagggtggtcagtgtctgatcttaggcagggagat
cagtggtaggaagagggctggacatcagactttggttactcaataaatgg
atacagagagaactgaatattaagaggctcagacaagttcaccattgagg
tctgagggggagtgctataaggctgtgatgagtcagggaaccaaggagca
agatcacgcttggtgaaaatgaatgctccctgcttacaagcagtgcttca
gcttcagtctccttttcatcatgtttcttctgtcctctctatgccttttc
ttgtttctcattctttccttcttccagcaaagctgtgagaattgatacaa
gccattagggaaaagaaagacagacatagagtacaaatgggtcatttaaa
atctgtctgcaagtagctttaggtgtagtctttgtgcccatggtcatctc
tgaaaactcaggagcttggtctgcatgcctcctcaccaaagctccattac
cattaaacagaatgtacattactgctatgtccatccatcttagctgttga
atgacttgtaccatgaa
gaattcatacccaatttttattggaatagttgacacttctacataaaaga
aaatccaaaagactgaattaaaaacaacagcagcaacaacaacaataata
taatcaaataggttaatttgctgtaccaggagggctagtggcagctcaat
agatagtttgtaccaggagggctagtgacagctcaatagatagtttgatt
gagagactagatatggaactcaactggacaaatgaatcagagcctagtag
ccaagggtgtggaagcatatccaaacaatttcagaaaaacaatttaggga
catctgtttatttggactaatgtagacaaaatatcactgactaaatgctt
tgatatcacttaatcctagctgaaattcttaggggaaaaacactatcata
atatccatggatttattaagctttggagggttgacaaaattatgtctcta
cccatttattcataaattatttcatttctctcatgttccaacttcaaatt
cagttatttgtggtttcttgttttgttttgtttgtctttatatcaaagca
gaaagactatgacaacacattggtatcaaggaagacgaggatcaggagga
ggggacactgccagggagagcactgtttcagacttaatgctgcatgctct
acatgcatactatctacttctccagaccgagtctgagacaaatacttact
tttagaagaaaaaaaaaactcaagaagagtaaatagacaacatataaaac
actttcatatataagtagcaaggaaaaaatataacaaaatattactggtc
aaaacaatgaaggagaaaattataagcagagagatggacagcccagaatc
taagaccaaggaaagaatccagcattatagatgttcacaaagtcctgatt
catctcacgttcattgcctcattgccttctcttttcttccccaaaattat
aggttcatgcttgggaaagtatcttctctttctcttgccactttgtaaat
cccatgaaagtctctatgatgctcatcagatctcagctctgattatatga
ctctggagtagtcaccaatactgaaactctaagtgatgaaaagaaatgga
tggacaacagtgagcaaggataggattatttactggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_63941629_63942781
seq2: B6Ng01-079E07.b_49_1165

seq1  GAATTCAGACTATGATATACGAGTATTGTGTATGTGTGTGTGTAATCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTATGATATACGAGTATTGTGTATGTGTGTGTGTAATCTAG  50

seq1  AATAATATTATGTACCATATAATAAAACCATATATTATATGGTACATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATTATGTACCATATAATAAAACCATATATTATATGGTACATATA  100

seq1  ATATATCTACATATGTCATGTATATAAAAACATATAACATTAAAGCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTACATATGTCATGTATATAAAAACATATAACATTAAAGCAGGA  150

seq1  GGGGAGTATTTGAAAGCAAAAAAGTAACCACCCAGAGGGAGTGGGGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTATTTGAAAGCAAAAAAGTAACCACCCAGAGGGAGTGGGGAACA  200

seq1  AGTAGTAGTGAGATCATTGTGAGCAAAGCAAAATGAAATAGACATATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAGTGAGATCATTGTGAGCAAAGCAAAATGAAATAGACATATGAA  250

seq1  AATGTTATAATGAAACCAGTGCCACACAGTTTTTCAAAAATTAAAAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATAATGAAACCAGTGCCACACAGTTTTTCAAAAATTAAAAAAGT  300

seq1  ACCTCATGCTTTATTAAATGCTCTGTTCTCATTCCTTTGAAATTCTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATGCTTTATTAAATGCTCTGTTCTCATTCCTTTGAAATTCTTAAA  350

seq1  TTTTCTTTTCAATTACCACATGGAAATTAAATGGCCAATCCTGGTGACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCAATTACCACATGGAAATTAAATGGCCAATCCTGGTGACAA  400

seq1  GAATGGGATTTTAGGCTTTTTGTTCATGAAAAGAAATTTCCATTACACGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGATTTTAGGCTTTTTGTTCATGAAAAGAAATTTCCATTACACGA  450

seq1  CTTTAATCAAAGAGAATATGATCTGAGTCAGACTTCAGAAACTCAAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCAAAGAGAATATGATCTGAGTCAGACTTCAGAAACTCAAATCT  500

seq1  CAGCTTGTTCTGGGGAGTTGGATGTGTGGGAGTCTATGGAGAAACCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGTTCTGGGGAGTTGGATGTGTGGGAGTCTATGGAGAAACCCTCA  550

seq1  CAAATGTTGTCTGTTCAGGGTGGTCAGTGTCTGATCTTAGGCAGGGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTGTCTGTTCAGGGTGGTCAGTGTCTGATCTTAGGCAGGGAGAT  600

seq1  CAGTGGTAGGAAGAGGGCTGGACATCAGACTTTGGTTACTCAATAAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTAGGAAGAGGGCTGGACATCAGACTTTGGTTACTCAATAAATGG  650

seq1  ATACAGAGAGAACTGAATATTAAGAGGCTCAGACAAGTTCACCATTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGAGAACTGAATATTAAGAGGCTCAGACAAGTTCACCATTGAGG  700

seq1  TCTGAGGGGGAGTGCTATAAGGCTGTGATGAGTCAGGGAACCAAGGAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGGGGAGTGCTATAAGGCTGTGATGAGTCAGGGAACCAAGGAGCA  750

seq1  AGATCAGGCTTGGTGAAAATGAATGCTCCCTGCTTACAAGCAGTGCTTCA  800
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACGCTTGGTGAAAATGAATGCTCCCTGCTTACAAGCAGTGCTTCA  800

seq1  GCTTCAGTCTCCTTTTCATCATGTTTCTTCTGTCCTCTCTATGCCTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGTCTCCTTTTCATCATGTTTCTTCTGTCCTCTCTATGCCTTTTC  850

seq1  TTGTTTCTCATTCTTTCCTTCTTCCAGCAAAGCTGTGAGAATTGATACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTCATTCTTTCCTTCTTCCAGCAAAGCTGTGAGAATTGATACAA  900

seq1  GCCATTAGGGAAAAGAAAGACAGACATAAGAAGTAACAAAATGGGTCATT  950
      ||||||||||||||||||||||||||||   ||||   ||||||||||||
seq2  GCCATTAGGGAAAAGAAAGACAGACATA--GAGTA--CAAATGGGTCATT  946

seq1  TAAAAATCTGTCCTGCAAGTAGCTTTTAGGGTGTTAAGTTCTTTTGTGCC  1000
      | ||||||||| ||||||||||||||   |||||  |||   ||||||||
seq2  T-AAAATCTGT-CTGCAAGTAGCTTT--AGGTGT--AGT--CTTTGTGCC  988

seq1  CCATTGGTCATTCTTCTGAAAACCTTCCAGGGAAGCTTTGGTCTGCATTG  1050
      |   |||||||   |||||||||    ||||  ||| |||||||||| ||
seq2  C--ATGGTCAT--CTCTGAAAAC---TCAGG--AGC-TTGGTCTGCA-TG  1027

seq1  CCTCCCTTCACCAAAGCTCCAATTACACATTAAACAG-ATGTACATTTAA  1099
      |||||  ||||||||||||| ||||| |||||||||| |||||||||   
seq2  CCTCC--TCACCAAAGCTCC-ATTAC-CATTAAACAGAATGTACATT---  1070

seq1  CCTGCTTATGTCTCATCCATTCTTTAAGCTGTTGAATTGACTTGTACCCA  1149
       |||| |||||| |||||| ||||  |||||||||| ||||||||| |||
seq2  ACTGC-TATGTC-CATCCA-TCTT--AGCTGTTGAA-TGACTTGTA-CCA  1113

seq1  TGAA  1153
      ||||
seq2  TGAA  1117

seq1: chr4_64063734_64064892
seq2: B6Ng01-079E07.g_70_1208 (reverse)

seq1  ACTCCAAGTAAATAATCTAATCCTATGCTCAACTGTTGTCCATCCATTTC  50
      ||||| |||||||||||  ||||| ||||| |||||||||||||||||||
seq2  ACTCC-AGTAAATAATCCTATCCT-TGCTC-ACTGTTGTCCATCCATTTC  47

seq1  TTCTCCATTCACTTTAAGAGTGTCAGTATTGGTGACTTACT-CAGAGGTC  99
      || ||   ||||||  ||||| |||||||||||||| |||| |||| |||
seq2  TTTTC--ATCACTT--AGAGTTTCAGTATTGGTGAC-TACTCCAGA-GTC  91

seq1  AATATAATCAGAGCTGAGGATCTGATGAGCATCATAGGAGAACTTTCATG  149
       |||||||||||||||| |||||||||||||||||| ||| |||||||||
seq2  -ATATAATCAGAGCTGA-GATCTGATGAGCATCATA-GAG-ACTTTCATG  137

seq1  GGGATTTTACAAAGTGGGCAAGAGAAAGAGGAAGATACTTTCCCAAGCAT  199
      ||   |||||||||| ||||||||||||| ||||||||||||||||||| 
seq2  GG--ATTTACAAAGT-GGCAAGAGAAAGA-GAAGATACTTTCCCAAGCA-  182

seq1  TGAACCTTATAATTTTGGGGAAGAAAAGGAGAAGGCAAATGAGGCAATGA  249
      |||||| |||||||||||||||||||| |||||||| |||||||||||||
seq2  TGAACC-TATAATTTTGGGGAAGAAAA-GAGAAGGC-AATGAGGCAATGA  229

seq1  ACGTGAGATGAATCAGGACTTTGTGAACATCTATAATGCTGGATTCTTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAGATGAATCAGGACTTTGTGAACATCTATAATGCTGGATTCTTTC  279

seq1  CTTGGTCTTAGATTCTGGGCTGTCCATCTCTCTGCTTATAATTTTCTCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTTAGATTCTGGGCTGTCCATCTCTCTGCTTATAATTTTCTCCT  329

seq1  TCATTGTTTTGACCAGTAATATTTTGTTATATTTTTTCCTTGCTACTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTTTGACCAGTAATATTTTGTTATATTTTTTCCTTGCTACTTAT  379

seq1  ATATGAAAGTGTTTTATATGTTGTCTATTTACTCTTCTTGAGTTTTTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAAGTGTTTTATATGTTGTCTATTTACTCTTCTTGAGTTTTTTTT  429

seq1  TTCTTCTAAAAGTAAGTATTTGTCTCAGACTCGGTCTGGAGAAGTAGATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTAAAAGTAAGTATTTGTCTCAGACTCGGTCTGGAGAAGTAGATA  479

seq1  GTATGCATGTAGAGCATGCAGCATTAAGTCTGAAACAGTGCTCTCCCTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCATGTAGAGCATGCAGCATTAAGTCTGAAACAGTGCTCTCCCTGG  529

seq1  CAGTGTCCCCTCCTCCTGATCCTCGTCTTCCTTGATACCAATGTGTTGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCCCTCCTCCTGATCCTCGTCTTCCTTGATACCAATGTGTTGTC  579

seq1  ATAGTCTTTCTGCTTTGATATAAAGACAAACAAAACAAAACAAGAAACCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTTCTGCTTTGATATAAAGACAAACAAAACAAAACAAGAAACCA  629

seq1  CAAATAACTGAATTTGAAGTTGGAACATGAGAGAAATGAAATAATTTATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAACTGAATTTGAAGTTGGAACATGAGAGAAATGAAATAATTTATG  679

seq1  AATAAATGGGTAGAGACATAATTTTGTCAACCCTCCAAAGCTTAATAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGGGTAGAGACATAATTTTGTCAACCCTCCAAAGCTTAATAAAT  729

seq1  CCATGGATATTATGATAGTGTTTTTCCCCTAAGAATTTCAGCTAGGATTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGATATTATGATAGTGTTTTTCCCCTAAGAATTTCAGCTAGGATTA  779

seq1  AGTGATATCAAAGCATTTAGTCAGTGATATTTTGTCTACATTAGTCCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATATCAAAGCATTTAGTCAGTGATATTTTGTCTACATTAGTCCAAA  829

seq1  TAAACAGATGTCCCTAAATTGTTTTTCTGAAATTGTTTGGATATGCTTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGATGTCCCTAAATTGTTTTTCTGAAATTGTTTGGATATGCTTCC  879

seq1  ACACCCTTGGCTACTAGGCTCTGATTCATTTGTCCAGTTGAGTTCCATAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTTGGCTACTAGGCTCTGATTCATTTGTCCAGTTGAGTTCCATAT  929

seq1  CTAGTCTCTCAATCAAACTATCTATTGAGCTGTCACTAGCCCTCCTGGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTCTCAATCAAACTATCTATTGAGCTGTCACTAGCCCTCCTGGTA  979

seq1  CAAACTATCTATTGAGCTGCCACTAGCCCTCCTGGTACAGCAAATTAACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTATCTATTGAGCTGCCACTAGCCCTCCTGGTACAGCAAATTAACC  1029

seq1  TATTTGATTATATTATTGTTGTTGTTGCTGCTGTTGTTTTTAATTCAGTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATTATATTATTGTTGTTGTTGCTGCTGTTGTTTTTAATTCAGTC  1079

seq1  TTTTGGATTTTCTTTTATGTAGAAGTGTCAACTATTCCAATAAAAATTGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGATTTTCTTTTATGTAGAAGTGTCAACTATTCCAATAAAAATTGG  1129

seq1  GTATGAATTC  1159
      ||||||||||
seq2  GTATGAATTC  1139