BAC Information

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BAC

Clone NameB6Ng01-079E22
Chromosome4 (Build37)
Map Location 91,674,977 - 91,793,148
singlet/doubletdoublet
Overlap geneLOC664886
Upstream geneLOC664840, LOC664848, LOC100042274, Elavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik
Downstream gene1700011H22Rik, LOC68280, LOC620269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079E22.bB6Ng01-079E22.g
ACCDH894752DH894753
length1,2321,093
definitionDH894752|Mus musculus domesticus DNA, BAC clone: B6Ng01-079E22, 5' end.DH894753|Mus musculus domesticus DNA, BAC clone: B6Ng01-079E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,791,988 - 91,793,148)(91,674,977 - 91,676,083)
sequence
gaattctcacctgcagaacaatacacatgctcaagaggcatgctttatgg
actctcagatacaagctttctccagcagctatgtaactccagaaacaatc
tcactgactggcatgcaacagacaattggaaagtactaaattaaatgaaa
acatatcaatcatatatatgagaatgttgacaaacccctgcagtggtgcc
tttagaagtaacttaagtgctggtgtatggggggtctcataaatgcattt
tttttctgagccactcatacatacatacatacacatttctcatagaggac
ttgattccatttttgagtttccagattctgacgtttgctttcgaatgaaa
gaacttctgatctttgataatatgttcaattttggggttttagctatagt
caaatactgagaggcccctattggatttttccccctagtggattttaatc
ttgcatagacatttgaaattgctcactcttcaaaggataagtgtttattt
gattcaagttctttacattagcttttggttagggttaaaagctcactcat
tatcaacctgttatgacatctgtcgagatatattcctaagggacttagta
ataaagactgcatgcacagataaatataaattctcctattcctttccttg
acatgtttcttgaactgaatgtgttttcctgagaaattgcaaataccctt
ggtttcttgcagctgtgaatgtgtacttactgagttgctagtgaaaaatc
accaacactgtctcccagccagccatcatacatacatatgtgtgtggtag
gaggtaaaggaactacattgcctaaaagtaataaaatttatagaataaac
atctatatggagacatagattaaaagttaaagatcactgcaaatgcatgt
tctacatatcatacagtagtatgttgtcttcatggtaccagctccactgg
ttcattccagggatcctaaaagcatgattcttttaaatacctccatctgg
gctaggagaaaattagaacatccatttttctgctatgtcctgctgcatcg
acagcagttccaaattgagcatgccacttgaaattctgttatcaaagaag
ctgttttgtcccaagtacttctggttctttccataatgttgatggggaat
ggaaatatggaacaaccttgcagcctcctgggttagttctgttttctgcc
aaacgaacgacatggtggtgactgaatatgga
gaattcaaagctaatcagttacctttcctgatttatttttgtcccctaag
gcattcttctctagttatgagtctgtgattttccatgtgaatcaggatat
aagtagtagtctctaatatctattttctgacaatggatttatatactcag
ttgtccctgtgggagatttcctatagtgcagaaatgttactgtgacctgt
catcttttttctgtaatttcagatgaagtgtaactttcgtgtttttcata
atgaagaaagaagaagaagaagaagaagaagaagaagaagaagaagaaga
agaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaa
agagaaagaaagaaagacgaggaaacacagaaagatacaggtaattgtaa
tctattggtaatgcatgaggagatcagaagtcaacagtgaagatttgagt
gtgagaatttagttggtgaaatgctgtggtattttgtcttttggataatt
tttacaaattcataaataagtccatatttcagtaatgagtttcatcttgc
tgaagttatggccttcaacacagtccaggataatcgtttatgaaataagt
tataaaatacctgtgatatgattagtatacataagtttttttgcttcctc
aagaattgtagacaaattgccagtactggccatacaaactcttctctgga
tataacaaagtcagttgtaggtcccaataaaaattatggtaagcacttgg
tgcacagaccacaaattcatcttttttttaaattttttattaagtattta
gctcatttacatttccaatgctataccaaaagtcccccatacccacccac
ccccactcccctacccacccactccccctttttggccctggcgttcccct
gtactggggcatataaagtttgcgtgtccaatggtctctctttccagtga
tggccaactaggcatctttgatacatatgcagctagagtcaagagctccg
ggtactgatagtcataatgtgtctacctataggttgcagatcctttagct
ccttggtactttcctagctcttcatgggggcctgtgattccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_91791988_91793148
seq2: B6Ng01-079E22.b_46_1277 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TCCATATTCAGTCACCACCATGTCGTTCGTTTGGCAGAAAACAGAACTAA  50

seq1  ---------------------TCCATATT--CAATCCCCACTCAACATTA  27
                           ||||||||  || |||||| |||||||||
seq2  CCCAGGAGGCTGCAAGGTTGTTCCATATTTCCATTCCCCA-TCAACATTA  99

seq1  TGGAAAAGAAACCAG-AGTACTTGGGAACAAACAGCTTCTTTGAATACAG  76
      ||||||   |||||| |||||||||||  |||||||||||||||  ||||
seq2  TGGAAA--GAACCAGAAGTACTTGGGACAAAACAGCTTCTTTGATAACAG  147

seq1  AA-TTCAAGTGCATTGCTCAATTTGGAACTGGCTGTCGATGCAGCAGGAC  125
      || ||||||||   |||||||||||||||| |||||||||||||||||||
seq2  AATTTCAAGTGGCATGCTCAATTTGGAACT-GCTGTCGATGCAGCAGGAC  196

seq1  ATAGCAG-AAAATGGATGTTCTAATTTTCCTCCTAGCCCAGATGGAGGTA  174
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  ATAGCAGAAAAATGGATGTTCTAATTTT-CTCCTAGCCCAGATGGAGGTA  245

seq1  TTTAAAAGAATCATGCTTTTAGGATCCCTGGAATGAACCAGTGGAGCTGG  224
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGAATCATGCTTTTAGGATCCCTGGAATGAACCAGTGGAGCTGG  295

seq1  TACCATGAAGACAACATACTACTGTATGATATGTAGAACATGCATTTGCA  274
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGAAGACAACATACTACTGTATGATATGTAGAACATGCATTTGCA  345

seq1  GTGATCTTTAACTTTTAATCTATGTCTCCATATAGATGTTTATTCTATAA  324
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTTTAACTTTTAATCTATGTCTCCATATAGATGTTTATTCTATAA  395

seq1  ATTTTATTACTTTTAGGCAATGTAGTTCCTTTACCTCCTACCACACACAT  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTACTTTTAGGCAATGTAGTTCCTTTACCTCCTACCACACACAT  445

seq1  ATGTATGTATGATGGCTGGCTGGGAGACAGTGTTGGTGATTTTTCACTAG  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTATGATGGCTGGCTGGGAGACAGTGTTGGTGATTTTTCACTAG  495

seq1  CAACTCAGTAAGTACACATTCACAGCTGCAAGAAACCAAGGGTATTTGCA  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAGTAAGTACACATTCACAGCTGCAAGAAACCAAGGGTATTTGCA  545

seq1  ATTTCTCAGGAAAACACATTCAGTTCAAGAAACATGTCAAGGAAAGGAAT  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCAGGAAAACACATTCAGTTCAAGAAACATGTCAAGGAAAGGAAT  595

seq1  AGGAGAATTTATATTTATCTGTGCATGCAGTCTTTATTACTAAGTCCCTT  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAATTTATATTTATCTGTGCATGCAGTCTTTATTACTAAGTCCCTT  645

seq1  AGGAATATATCTCGACAGATGTCATAACAGGTTGATAATGAGTGAGCTTT  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATATCTCGACAGATGTCATAACAGGTTGATAATGAGTGAGCTTT  695

seq1  TAACCCTAACCAAAAGCTAATGTAAAGAACTTGAATCAAATAAACACTTA  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTAACCAAAAGCTAATGTAAAGAACTTGAATCAAATAAACACTTA  745

seq1  TCCTTTGAAGAGTGAGCAATTTCAAATGTCTATGCAAGATTAAAATCCAC  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGAAGAGTGAGCAATTTCAAATGTCTATGCAAGATTAAAATCCAC  795

seq1  TAGGGGGAAAAATCCAATAGGGGCCTCTCAGTATTTGACTATAGCTAAAA  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGGAAAAATCCAATAGGGGCCTCTCAGTATTTGACTATAGCTAAAA  845

seq1  CCCCAAAATTGAACATATTATCAAAGATCAGAAGTTCTTTCATTCGAAAG  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAATTGAACATATTATCAAAGATCAGAAGTTCTTTCATTCGAAAG  895

seq1  CAAACGTCAGAATCTGGAAACTCAAAAATGGAATCAAGTCCTCTATGAGA  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGTCAGAATCTGGAAACTCAAAAATGGAATCAAGTCCTCTATGAGA  945

seq1  AATGTGTATGTATGTATGTATGAGTGGCTCAGAAAAAAAATGCATTTATG  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTATGTATGTATGTATGAGTGGCTCAGAAAAAAAATGCATTTATG  995

seq1  AGACCCCCCATACACCAGCACTTAAGTTACTTCTAAAGGCACCACTGCAG  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCCCATACACCAGCACTTAAGTTACTTCTAAAGGCACCACTGCAG  1045

seq1  GGGTTTGTCAACATTCTCATATATATGATTGATATGTTTTCATTTAATTT  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGTCAACATTCTCATATATATGATTGATATGTTTTCATTTAATTT  1095

seq1  AGTACTTTCCAATTGTCTGTTGCATGCCAGTCAGTGAGATTGTTTCTGGA  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTTCCAATTGTCTGTTGCATGCCAGTCAGTGAGATTGTTTCTGGA  1145

seq1  GTTACATAGCTGCTGGAGAAAGCTTGTATCTGAGAGTCCATAAAGCATGC  1124
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATAGCTGCTGGAGAAAGCTTGTATCTGAGAGTCCATAAAGCATGC  1195

seq1  CTCTTGAGCATGTGTATTGTTCTGCAGGTGAGAATTC  1161
      |||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAGCATGTGTATTGTTCTGCAGGTGAGAATTC  1232

seq1: chr4_91674977_91676083
seq2: B6Ng01-079E22.g_65_1157

seq1  GAATTCAAAGCTAATCAGTTACCTTTCCTGATTTATTTTTGTCCCCTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCTAATCAGTTACCTTTCCTGATTTATTTTTGTCCCCTAAG  50

seq1  GCATTCTTCTCTAGTTATGAGTCTGTGATTTTCCATGTGAATCAGGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTCTCTAGTTATGAGTCTGTGATTTTCCATGTGAATCAGGATAT  100

seq1  AAGTAGTAGTCTCTAATATCTATTTTCTGACAATGGATTTATATACTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTAGTCTCTAATATCTATTTTCTGACAATGGATTTATATACTCAG  150

seq1  TTGTCCCTGTGGGAGATTTCCTATAGTGCAGAAATGTTACTGTGACCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCTGTGGGAGATTTCCTATAGTGCAGAAATGTTACTGTGACCTGT  200

seq1  CATCTTTTTTCTGTAATTTCAGATGAAGTGTAACTTTCGTGTTTTTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTTTCTGTAATTTCAGATGAAGTGTAACTTTCGTGTTTTTCATA  250

seq1  ATGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  300

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAA  350

seq1  AGAGAAAGAAAGAAAGACGAGGAAACACAGAAAGATACAGGTAATTGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAAAGAAAGACGAGGAAACACAGAAAGATACAGGTAATTGTAA  400

seq1  TCTATTGGTAATGCATGAGGAGATCAGAAGTCAACAGTGAAGATTTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGGTAATGCATGAGGAGATCAGAAGTCAACAGTGAAGATTTGAGT  450

seq1  GTGAGAATTTAGTTGGTGAAATGCTGTGGTATTTTGTCTTTTGGATAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAATTTAGTTGGTGAAATGCTGTGGTATTTTGTCTTTTGGATAATT  500

seq1  TTTACAAATTCATAAATAAGTCCATATTTCAGTAATGAGTTTCATCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAATTCATAAATAAGTCCATATTTCAGTAATGAGTTTCATCTTGC  550

seq1  TGAAGTTATGGCCTTCAACACAGTCCAGGATAATCGTTTATGAAATAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTATGGCCTTCAACACAGTCCAGGATAATCGTTTATGAAATAAGT  600

seq1  TATAAAATACCTGTGATATGATTAGTATACATAAGTTTTTTTGCTTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATACCTGTGATATGATTAGTATACATAAGTTTTTTTGCTTCCTC  650

seq1  AAGAATTGTAGACAAATTGCCAGTACTGGCCATACAAACTCTTCTCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTGTAGACAAATTGCCAGTACTGGCCATACAAACTCTTCTCTGGA  700

seq1  TATAACAAAGTCAGTTGTAGGTCCCAATAAAAATTATGGTAAGCACTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAAAGTCAGTTGTAGGTCCCAATAAAAATTATGGTAAGCACTTGG  750

seq1  TGCACAGACCACAAATTCATCTTTTTTTTAAATTTTTTATTAAGTATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGACCACAAATTCATCTTTTTTTTAAATTTTTTATTAAGTATTTA  800

seq1  GCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCAC  850

seq1  CCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCT  900

seq1  GTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTG  950
      |||||||||||||||||||||||||||||||| || ||||||||||||||
seq2  GTACTGGGGCATATAAAGTTTGCGTGTCCAAT-GGTCTCTCTTTCCAGTG  949

seq1  ATGGCCAACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCT  1000
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  ATGGCCAACTAGG-CATC-TTTGATACATATGCAGCTAGAGTCAAGAGCT  997

seq1  CCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGAT  1050
      || ||||||| | ||| |||||||||   || ||||||| ||||||||||
seq2  CC-GGGTACT-GATAG-TCATAATGT--GTCTACCTATA-GGTTGCAGAT  1041

seq1  CCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTTCATTGGGGGCCCTGT  1100
       ||||||||||||| ||||||||| |||||| ||||||  |||| |||||
seq2  -CCTTTAGCTCCTT-GGTACTTTC-CTAGCT-CTTCAT--GGGGGCCTGT  1085

seq1  GA-TCCAT  1107
      || |||||
seq2  GATTCCAT  1093