BAC Information

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BAC

Clone NameB6Ng01-079L04
Chromosome4 (Build37)
Map Location 4,633,355 - 4,789,285
singlet/doubletdoublet
Overlap geneImpad1
Upstream geneLyn, LOC621858, Rps20, Mos, Plag1, Chchd7, LOC666586, Rdhe2, 4833413O15Rik, Penk1, A830012C17Rik, LOC100039297, LOC622019
Downstream geneLOC100039338, 1700012H17Rik, LOC669309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079L04.bB6Ng01-079L04.g
ACCDH895033DH895034
length1,0011,014
definitionDH895033|Mus musculus domesticus DNA, BAC clone: B6Ng01-079L04, 5' end.DH895034|Mus musculus domesticus DNA, BAC clone: B6Ng01-079L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,788,266 - 4,789,285)(4,633,355 - 4,634,393)
sequence
gaattcaattaaatcaaacgcccgccagaacaaaacctaacatattttaa
agttaacaaaactaggcacagactattatagttttaacttccggaaccaa
agcggattaaataattcacctctgcacttccctagttttttctcctttct
ctctctctttcttccttccttccttccttccttccttccatccttccttc
cttccttcctcctcaaagcccttcgggtggtcttccaaccttgactcttc
tttcccttgccctctgattggcctactgagaattaaagcccggctggaat
atatcttatgtaccctgccttccccagaccaatcccacttgggcacctca
cccctttctccccccaataaatgtcctgtctaccacattctcacgctgct
ctttcatggcctttgacgaagggggtggggggagaaagcaaaagtttcca
aatgaaaagaggatactcaatcccatgacagtattttgagaaaaccgagc
ttccttggctgaccttgtctacagctggaaccccaaactcctaaccccca
ggatctcagtgcgtagttgtgaccagaagctcaggatctcaagatcttca
gtgcacggaggataagctacgttctactactgggggggactgctgtgcac
tccccagtccggcactgtctttagcatgtacccagacctccttataatga
acggtgatagtgacatccggcttttaaaacccccctggattaagatactt
ataatctatgcctaatcatgacaagttttggtttcaaaattactaacagt
attgcattaacttacaatccaagttctagcttgacattttgtacatttct
ggagatactttactgaataaataatctcaagttaatgaggtaattagaca
cacactcatcacagattacagaacacaactgttgttctcgtgaaagtact
aagttatttcaatcctcgaaataaattaaacagctgaaaagctttcaatc
a

gaattccgtgttacccccaaagacagagcttgcatgtaatgtgactgaat
catagtaaaggggtaaaaaattgaagtttgccaccagaagatatgggagt
ttctaagctcaactcagttttgccacaaataagaactgaggtattttctg
tgataagtatttaggccatgaaaacactagaaatgtgcaaagaaagtgct
ttctttacaaaaaaaaaaacagcatatgcccttcctagtttatcaaaatc
acaatgccaccctcaaaggtctccttcactctcttcattaacaaatattt
gtggagaaaccactaaatttagtcatttgtaatctagaaaattagttaaa
tgagattagcataataaatacaggtggtggtaagtcctaagaaataggtt
tgtcagggcatagagtgttaagcaagaatgctatacagagagagcttctc
ctgtcatttgaatatggcttgagcttatcttgtgtctgaggccctttctt
cagtgttacaggattactttgttttgctgtatgagatatttttatgttac
ttggaaatatgccctcagcagggattgtatagccatctctctttgtcttt
ctgtttggtgatgtgggttttccgtctctcacaacaagtttctagtatcc
tctatgagtctttcatgacaacagagctgatactggcaccatatgcttga
attcccagaatgaggagtttcataaacatgttttttaaaagaacattagc
ctggcttagttatttggttatagtaataaaatgtaacgatagagagccaa
cagaaagtgctgttgagagagacaagaatggtcacagccagttgaccaac
tgcttctaggagtagaaagtggggacgtgagttatgagacataaagtgtt
gacaaaagactggacagaaccccaaacaatacagtgatctttcaatgaac
ggactattgcataaagatgtgggagaagctggctgcagtgattggtcaga
agcagagcgtacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_4788266_4789285
seq2: B6Ng01-079L04.b_43_1043 (reverse)

seq1  TGATTGAAAAGCTATTTCAAATTTGTTTTAAATTTATATAGGAGAATTGA  50
      |||||| |||||| ||||  |  |||||  ||||||| |  ||| |||||
seq2  TGATTG-AAAGCT-TTTC--AGCTGTTT--AATTTAT-TTCGAGGATTGA  43

seq1  AAATAAACTTAGTACTTTTCATAGAGAACAACAGTTTTTGTTCTGTAATC  100
      ||   |||||||||| |||||  ||||||||||| || ||||||||||||
seq2  AA--TAACTTAGTAC-TTTCA-CGAGAACAACAG-TTGTGTTCTGTAATC  88

seq1  TGTGATGAGTGTTTGACTAATTTACCTCATTAACTTGAGATTATTTATTC  150
      |||||||||||| || |||| |||||||||||||||||||||||||||||
seq2  TGTGATGAGTGTGTGTCTAA-TTACCTCATTAACTTGAGATTATTTATTC  137

seq1  AGTAAAAGTATCTCCAGAAATGTTACAAAATATCAAGCTAGAACTTGGAT  200
      ||| |||||||||||||||||| |||||||| ||||||||||||||||||
seq2  AGT-AAAGTATCTCCAGAAATG-TACAAAATGTCAAGCTAGAACTTGGAT  185

seq1  TCTAA-TTTATGCAATATTGTTACTAATTTTTAAACCAAAACTTGTAATG  249
      | ||| || |||||||| ||||| ||||||| |||||||||||||| |||
seq2  TGTAAGTTAATGCAATACTGTTAGTAATTTTGAAACCAAAACTTGTCATG  235

seq1  TTTAAGTATAGAATATAAATATATTAATTCCAGGATGGTTTTAAAAGCTG  299
       ||| | ||||| ||||| ||| |||| ||||||  |||||||||||| |
seq2  ATTAGGCATAGATTATAAGTATCTTAA-TCCAGGGGGGTTTTAAAAGCCG  284

seq1  GATGTTATATATTGCTGTTCATTTTAAGGAATTCTGGGGACATGCTAAAG  349
      ||||| |  |||  | ||||||| ||||||  |||||| |||||||||||
seq2  GATGTCA-CTATCACCGTTCATTATAAGGAGGTCTGGGTACATGCTAAAG  333

seq1  ACAGTGCCTGACTGGATTTTGCACAGCAGATGCTGCCAGTAGTAGGAGGT  399
      |||||||| ||||||    ||||||||||   |  |||||||||| | ||
seq2  ACAGTGCCGGACTGGGGAGTGCACAGCAGTCCCCCCCAGTAGTAGAACGT  383

seq1  AGCATATCCTGCCTGCACTGTGCATCTTGAGAGCCTGAGATTTTCTGCAC  449
      ||| |||||| | |||||||   ||||||||| |||||| || |   |||
seq2  AGCTTATCCTCCGTGCACTGAAGATCTTGAGATCCTGAGCTTCTGGTCAC  433

seq1  AACTATGCATTGAGATCCTGGGGACTTTGAGTCTGGGGTTCCAGCTCTAG  499
      ||||| ||| |||||||||||||  |  |||| ||||||||||||| |||
seq2  AACTACGCACTGAGATCCTGGGGGTTAGGAGTTTGGGGTTCCAGCTGTAG  483

seq1  GCTATGTCAGCCAAGGAAGCTCTGCTTTCTCAAAATACTGTCATGGGATT  549
       | | ||||||||||||||||| | |||||||||||||||||||||||||
seq2  ACAAGGTCAGCCAAGGAAGCTCGGTTTTCTCAAAATACTGTCATGGGATT  533

seq1  GAAAACTAACTTTTTATTTGGAAACCTCTGCTTTCACTGTTAAATATCTA  599
      ||  |    ||||| |||||||||| | ||||||| |     |    || 
seq2  GAGTATCCTCTTTTCATTTGGAAACTTTTGCTTTCTCCCCCCACCCCCT-  582

seq1  TGTCTTGTTTAAG----TGGAAGAGAAGCTAGAGAGTATTACTACCAGGA  645
          | ||  |||    || ||||| |||  |||| | |      |||||
seq2  ----TCGTCAAAGGCCATGAAAGAGCAGCGTGAGAATGTGGTAGACAGGA  628

seq1  CATTTATT-CCAACATAAATTTCCTTGATTACTTTCTATT--TTTTCTTC  692
      ||||||||      | |||       | |  |   | | |    ||  ||
seq2  CATTTATTGGGGGGAGAAAGGGGTGAGGTGCC---CAAGTGGGATTGGTC  675

seq1  TATTCTTTTTTTGAGACATCTGATATATTCCAGACTGGCTTTAAATTCAC  742
      |           |  ||||  |||||||||||| | |||||| ||||| |
seq2  TGGGGAAGGCAGGGTACATAAGATATATTCCAGCCGGGCTTT-AATTCTC  724

seq1  TGTATAGCCAA--GGATGACCTTAAACGG--ATAATGTTCTTGCTTCTAA  788
       |||  |||||   || | |    || ||  | ||   ||  | ||  ||
seq2  AGTA-GGCCAATCAGAGGGC----AAGGGAAAGAAGAGTCAAGGTTGGAA  769

seq1  CTCCATGTGCTAGTATTTCAGGAGGAAGGAAGGAAGGAAGGAAGGAAGGA  838
        |||   |   |  ||| ||||||||||||||||||||||| |||||||
seq2  GACCACCCGAAGGGCTTTGAGGAGGAAGGAAGGAAGGAAGGATGGAAGGA  819

seq1  AGGAAGGAAGGAAGGAAGGAAGAAAGAGAGAGAGAAAGGAGAAAAAACTA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAAGGAAGAAAGAGAGAGAGAAAGGAGAAAAAACTA  869

seq1  GGGAAGTGCAGAGGTGAATTATTTAATCCGCTTTGGTTCCGGAAGTTAAA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTGCAGAGGTGAATTATTTAATCCGCTTTGGTTCCGGAAGTTAAA  919

seq1  ACTATAATAGTCTGTGCCTAGTTTTGTTAACTTTAAAATATGTTAGGTTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATAGTCTGTGCCTAGTTTTGTTAACTTTAAAATATGTTAGGTTT  969

seq1  TGTTCTGGCGGGCGTTTGATTTAATTGAATTC  1020
      ||||||||||||||||||||||||||||||||
seq2  TGTTCTGGCGGGCGTTTGATTTAATTGAATTC  1001


seq1: chr4_4633355_4634393
seq2: B6Ng01-079L04.g_68_1081

seq1  GAATTCAGTGTTACCCCCAAAGACAGAGCTTGCATGTAATGTGACTGAAT  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTGTTACCCCCAAAGACAGAGCTTGCATGTAATGTGACTGAAT  50

seq1  CATAGTAAAGGGGTAAAAAATTGAAGTTTGCCACCAGAAGATATGGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTAAAGGGGTAAAAAATTGAAGTTTGCCACCAGAAGATATGGGAGT  100

seq1  TTCTAAGCTCAACTCAGTTTTGCCACAAATAAGAACTGAGGTATTTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGCTCAACTCAGTTTTGCCACAAATAAGAACTGAGGTATTTTCTG  150

seq1  TGATAAGTATTTAGGCCATGAAAACACTAGAAATGTGCAAAGAAAGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGTATTTAGGCCATGAAAACACTAGAAATGTGCAAAGAAAGTGCT  200

seq1  TTCTTTACAAAAAAAAAAACAGCATATGCCCTTCCTAGTTTATCAAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTACAAAAAAAAAAACAGCATATGCCCTTCCTAGTTTATCAAAATC  250

seq1  ACAATGCCACCCTCAAAGGTCTCCTTCACTCTCTTCATTAACAAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCCACCCTCAAAGGTCTCCTTCACTCTCTTCATTAACAAATATTT  300

seq1  GTGGAGAAACCACTAAATTTAGTCATTTGTAATCTAGAAAATTAGTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAAACCACTAAATTTAGTCATTTGTAATCTAGAAAATTAGTTAAA  350

seq1  TGAGATTAGCATAATAAATACAGGTGGTGGTAAGTCCTAAGAAATAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTAGCATAATAAATACAGGTGGTGGTAAGTCCTAAGAAATAGGTT  400

seq1  TGTCAGGGCATAGAGTGTTAAGCAAGAATGCTATACAGAGAGAGCTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGGCATAGAGTGTTAAGCAAGAATGCTATACAGAGAGAGCTTCTC  450

seq1  CTGTCATTTGAATATGGCTTGAGCTTATCTTGTGTCTGAGGCCCTTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTTGAATATGGCTTGAGCTTATCTTGTGTCTGAGGCCCTTTCTT  500

seq1  CAGTGTTACAGGATTACTTTGTTTTGCTGTATGAGATATTTTTATGTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTACAGGATTACTTTGTTTTGCTGTATGAGATATTTTTATGTTAC  550

seq1  TTGGAAATATGCCCTCAGCAGGGATTGTATAGCCATCTCTCTTTGTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATATGCCCTCAGCAGGGATTGTATAGCCATCTCTCTTTGTCTTT  600

seq1  CTGTTTGGTGATGTGGGTTTTCCGTCTCTCACAACAAGTTTCTAGTATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGTGATGTGGGTTTTCCGTCTCTCACAACAAGTTTCTAGTATCC  650

seq1  TCTATGAGTCTTTCATGACAACAGAGCTGATACTGGCACCATATGCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAGTCTTTCATGACAACAGAGCTGATACTGGCACCATATGCTTGA  700

seq1  ATTCCCAGAATGAGGAGTTTCATAAACATGTTTTTTAAAAAGAACATTAG  750
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTCCCAGAATGAGGAGTTTCATAAACATGTTTTTT-AAAAGAACATTAG  749

seq1  CCTGGCTTAGTTATTTGGTTATAGTAAATAAAAATGTAACGATAGAGAGG  800
      |||||||||||||||||||||||||||   |||||||||||||||||| |
seq2  CCTGGCTTAGTTATTTGGTTATAGTAA--TAAAATGTAACGATAGAGA-G  796

seq1  CCAACAGAAAGTGCTGTTGAGAGAAGACAAGAATGGTCACAGCCAGTTGA  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCAACAGAAAGTGCTGTTGAGAG-AGACAAGAATGGTCACAGCCAGTTGA  845

seq1  CCAACTGCTCCTAGGAGGTAGAAAAGGTGGGACGTGAGTTTATGAGACAT  900
      ||||||||| |||||| |||| ||||  |||||||||| |||||||||||
seq2  CCAACTGCTTCTAGGA-GTAG-AAAGTGGGGACGTGAG-TTATGAGACAT  892

seq1  AAAGGTGTTGACAAAAAAGACATGGAACAGAACCCCAAAACAAATACAGT  950
      ||| ||||||||  ||||||| ||| |||||||||||||   ||||||||
seq2  AAA-GTGTTGAC--AAAAGAC-TGG-ACAGAACCCCAAA--CAATACAGT  935

seq1  GAATCTTTCAAATGAGACGGAACTATGGCATAAAAGAGTGTGGGAGAAAG  1000
      | ||||||| ||||| |||| ||||| |||| ||||| |||||||| |||
seq2  G-ATCTTTC-AATGA-ACGG-ACTATTGCAT-AAAGA-TGTGGGAG-AAG  978

seq1  CTGGCTGCAAGTGATTGGGTCAGAAAGCAGAGCGTACAT  1039
      |||||||| ||||||| |||||| |||||||||||||||
seq2  CTGGCTGC-AGTGATT-GGTCAG-AAGCAGAGCGTACAT  1014


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