BAC Information

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BAC

Clone NameB6Ng01-080A01
Chromosome2 (Build37)4 (Build37)
Map Location 73,196,008 - 73,196,37718,096,298 - 18,097,382
singlet/doubletsingletsinglet
Overlap geneGpr155
Upstream geneB230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3
Downstream geneWipf1, Chrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080A01.bB6Ng01-080A01.g
ACCDH895259DH895260
length2491,078
definitionDH895259|Mus musculus domesticus DNA, BAC clone: B6Ng01-080A01, 5' end.DH895260|Mus musculus domesticus DNA, BAC clone: B6Ng01-080A01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(73,196,008 - 73,196,377)(18,096,298 - 18,097,382)
sequence
cagaacagccagggttatacagaaaaaccctgtctcaaaaaatccaaaaa
aaaaaaaaaaaaaagaactcctagctcctcctgcaccatgcctgcctggt
aatggactgaacctctgaatctgtaagccatccccaattaaatgaatttt
ataagacgtgccttggtcatagtgtctgttcacagcagtaaaaccctaag
actgtatgtatgtatgtatgtatgtatgtatgtatatatatatatatat
gaattcattagaacttcttttctacagccaataggcataggaaaaaaaat
gaaacgtttctggcagttctcagtgttgatggaagaatcaaagtggcctt
caatgggctggtggtaaaaggagcactttgttttgggttctaactgcctg
aacatggtcattttgaaaatcaatataggtgtgtgttctaggaaatcaga
ggagttgtttgttaatacatcagcttgaacagaggaagctggggaactgt
catggggaaattcatgatgcatgaggggacttcctgagcatgttcccaag
gactctgcataaatagaagtctttgttgactcataaaattagatgatcct
gtaagcatcagaattagttgtgcgtagatttgctcaaattgaaattttct
ccttctttgaagattccttaatgattcacataaagcttattaaaagaaaa
ttctaaaaaagagaggtgataggtgtaaccaatatcatcatgaaaatatt
tttattgaacttgaccaatatgcctagatttggaggaagcttcatgtttt
ctactccagtccctatttctccattctccacaaagtattacagaaaatag
atttctaataactcacgtgatatagtctagctttgcattgtttattgaaa
gaactcctgattaatcaagaaactaaagaaagggatagaaaaaaaaataa
agaaactaaagaaagattttaaaaatgtaccatgacatacacgcataaat
ttgttgagaaataggatttttcctcagtgttatcacccccagcttcatca
tttataataatttaatgaatactattttgaacatttttcaaaatgggcac
aaaattgctggattaaaattaaatgcttcacaagtgtaagatgaaattat
tgtgaagttttaagacattcagataatcaatgtcaattgcctgcatattt
tatacaatggaaattattcatatatgattatagtattgaaaagcaatata
acttatatttacagctaacagcagtgggtaaacaaagataaattcttagc
agtgcacctcagagatgagatgttttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_73196008_73196377
seq2: B6Ng01-080A01.b_96_250

seq1  AAAAAAAAAAAAAAAAAGAAAAGAAACTGTTTTACAGTTTTTCAGTGTGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGGTTTATAGATGCTCAGCCCAGAGAGTGGCACTATTAGGAAGTGTGGCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTGTTGGAGTAGGTGTGTCACTGTGGGTGTGGGCTCTAAGACCCTCATCA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TAGCTGCCTAGAAGTCAGTATTCTGCTAGCAGCCTTCAGATGAAGATGTA  200
                                 |  |      | |  || |   |
seq2  ---------------------------AAAA------AAAAAAAAAAAAA  17

seq1  GAATTCTCAGCTCCTCCTGCACCATGCCTGCTTGGATGCTGCCATGTTCC  250
      ||| ||  ||||||||||||||||||||||| |||               
seq2  GAACTCCTAGCTCCTCCTGCACCATGCCTGCCTGG---------------  52

seq1  CACTTTGACGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAAT  300
                 |||||||||||||||||||| |||||||||| |||||||
seq2  -----------TAATGGACTGAACCTCTGAATCTGTAAGCCATCCCCAAT  91

seq1  TAAATGTTGTCCTTTGTAAGACTTGCCTTGGTCATGGTGTCTGTCCACAG  350
      ||||   ||   ||| |||||| |||||||||||| |||||||| |||||
seq2  TAAA---TGAATTTTATAAGACGTGCCTTGGTCATAGTGTCTGTTCACAG  138

seq1  CAGTAAAACCCAACTAAGAC  370
      ||||||||||   |||||||
seq2  CAGTAAAACC---CTAAGAC  155

seq1: chr4_18096298_18097382
seq2: B6Ng01-080A01.g_65_1142 (reverse)

seq1  GTAAAACAATCTCATCTCTGAGTTGGCACTGCT-AGAATTTATCTTTTGT  49
      ||||||| |||||||||||||| | |||||||| |||||||||| |||||
seq2  GTAAAAC-ATCTCATCTCTGAGGT-GCACTGCTAAGAATTTATC-TTTGT  47

seq1  TTACCCACTGCTGTTAGCTGTAAATATAAGTTATATTGCTTTTCAATACT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCACTGCTGTTAGCTGTAAATATAAGTTATATTGCTTTTCAATACT  97

seq1  AATAATTCATATATGAATAATTTCCATTGTTATAAAATATTGCAGGCAAT  149
       |||| ||||||||||||||||||||||| ||||||||| ||||||||||
seq2  -ATAA-TCATATATGAATAATTTCCATTG-TATAAAATA-TGCAGGCAAT  143

seq1  TGACATTGATTATCTGAATGTCTTAAAACTTCACAATAATTTCATCTTAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTGATTATCTGAATGTCTTAAAACTTCACAATAATTTCATCTTAC  193

seq1  ACTTGTTGAAGCATTTAATTTTAATCCAGCAATTTTGTGCCCATTTTGAA  249
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTG-TGAAGCATTTAATTTTAATCCAGCAATTTTGTGCCCATTTTGAA  242

seq1  AAATGTTCAAAATAGTATTCATTAAATTATTATAAATGATGAAGCTGGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTCAAAATAGTATTCATTAAATTATTATAAATGATGAAGCTGGGG  292

seq1  GTGATAACACTGAGGAAAAATCCTATTTCTCAACAAATTTATGCGTGTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAACACTGAGGAAAAATCCTATTTCTCAACAAATTTATGCGTGTAT  342

seq1  GTCATGGTACATTTTTAAAATCTTTCTTTAGTTTCTTTATTTTTTTTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGTACATTTTTAAAATCTTTCTTTAGTTTCTTTATTTTTTTTTCT  392

seq1  ATCCCTTTCTTTAGTTTCTTGATTAATCAGGAGTTCTTTCAATAAACAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTTCTTTAGTTTCTTGATTAATCAGGAGTTCTTTCAATAAACAAT  442

seq1  GCAAAGCTAGACTATATCACGTGAGTTATTAGAAATCTATTTTCTGTAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCTAGACTATATCACGTGAGTTATTAGAAATCTATTTTCTGTAAT  492

seq1  ACTTTGTGGAGAATGGAGAAATAGGGACTGGAGTAGAAAACATGAAGCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTGGAGAATGGAGAAATAGGGACTGGAGTAGAAAACATGAAGCTT  542

seq1  CCTCCAAATCTAGGCATATTGGTCAAGTTCAATAAAAATATTTTCATGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAATCTAGGCATATTGGTCAAGTTCAATAAAAATATTTTCATGAT  592

seq1  GATATTGGTTACACCTATCACCTCTCTTTTTTAGAATTTTCTTTTAATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGGTTACACCTATCACCTCTCTTTTTTAGAATTTTCTTTTAATAA  642

seq1  GCTTTATGTGAATCATTAAGGAATCTTCAAAGAAGGAGAAAATTTCAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATGTGAATCATTAAGGAATCTTCAAAGAAGGAGAAAATTTCAATT  692

seq1  TGAGCAAATCTACGCACAACTAATTCTGATGCTTACAGGATCATCTAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAATCTACGCACAACTAATTCTGATGCTTACAGGATCATCTAATT  742

seq1  TTATGAGTCAACAAAGACTTCTATTTATGCAGAGTCCTTGGGAACATGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGTCAACAAAGACTTCTATTTATGCAGAGTCCTTGGGAACATGCT  792

seq1  CAGGAAGTCCCCTCATGCATCATGAATTTCCCCATGACAGTTCCCCAGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTCCCCTCATGCATCATGAATTTCCCCATGACAGTTCCCCAGCT  842

seq1  TCCTCTGTTCAAGCTGATGTATTAACAAACAACTCCTCTGATTTCCTAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTTCAAGCTGATGTATTAACAAACAACTCCTCTGATTTCCTAGA  892

seq1  ACACACACCTATATTGATTTTCAAAATGACCATGTTCAGGCAGTTAGAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACCTATATTGATTTTCAAAATGACCATGTTCAGGCAGTTAGAAC  942

seq1  CCAAAACAAAGTGCTCCTTTTACCACCAGCCCATTGAAGGCCACTTTGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACAAAGTGCTCCTTTTACCACCAGCCCATTGAAGGCCACTTTGAT  992

seq1  TCTTCCATCAACACTGAGAACTGCCAGAAACGTTTCATTTTTTTTCCTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATCAACACTGAGAACTGCCAGAAACGTTTCATTTTTTTTCCTAT  1042

seq1  GCCTATTGGCTGTAGAAAAGAAGTTCTAATGAATTC  1085
      ||||||||||||||||||||||||||||||||||||
seq2  GCCTATTGGCTGTAGAAAAGAAGTTCTAATGAATTC  1078