BAC Information

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BAC

Clone NameB6Ng01-080C09
Chromosome4 (Build37)
Map Location 49,907,310 - 49,908,381
singlet/doubletsinglet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
Downstream geneLOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080C09.bB6Ng01-080C09.g
ACCDH895366DH895367
length1,1561,064
definitionDH895366|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C09, 5' end.DH895367|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaatgt
tcagcatccttaatcatcagggaaatgcaaatcaaaataaccgtgagatt
tcatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagca
gattctggcgaggatgtggagaaagaggaacactcctccattgttggtgg
gattgcaagcttaaacaacaactctggaaatcagtctggccattcttcag
aaaattggacatagtactactggaggatcccctatacctctcctgggcat
atatccagaaaatgtcccaactggtaagaaagacacatcatgctccacta
tgttcatagcagccttatttatagtagccagacactggaaaaaacccaga
tgcccctcaacagaggaatggatttaaaaatgtggtacattttcacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttggacctggagggcatcatcctgagtgatgtaacccaatcacaaa
agaattcaaatgatatgttctcactgataagtggatattagcccagaaac
ttagaatacccaagatataagatacaatttgtgaaacacatgaaactcaa
gaagaacgaagaacaaagtgtggactctttgccccttcataaaattggga
aggagttacagagacaaagtttggcgctgagacaaaaggatggaccatct
agagactgccatatccagggatccatcacataatcagcctccaaatgctg
acaccattgcacacactagcaagattttgctgaaggaccctgatatagct
gtctcttgtgagactatgccagggcctagcaaacacagcagtggatgatc
acagttagctattggatggatcacagggccccaatgtaggagctagagaa
agtaaccaaggagctaaagggaactgcaacctttagtggagcatattatg
actaacagtacccggagctcttgactctagctactttgtttcaaagatgg
cctagtaggcatccttggaagaaggccattagtcatgcaactttatatgc
ccagtcaggggacgcttggccaaaaatgggagtgggtgggatgggagtat
gttcct
gaattcaatgagaagatttggagctatttgcacattttattgatctagag
atcaataaatattgctgtttgtttttaagtcttgaaaggcagctagagag
aagagataaaactgtgctttcctggatgtttgaagaaagcaggaggagtc
attgcctggcttttactttctcttaagttacagaggcaaatgtgttgtcc
acagtacaaggagtgtaaggaaagaaattgggaggataaattatttttct
ttggatgtgttattcttgatgtcctactagtatgtcttgcataagtgttc
agtggaccatttgatctatggttatctatttcagagagatctggacttct
tatcttgatatacatgtcatcaaagtctgacaggaagcacatgtctagaa
tgaaccatagagttgaggagactctacaggcaatggtgaatttgttttat
ttttagtgtgtgcatatgtgtgacatgtaagtcaggtccgggtcctccct
tcacaccctgtttgagacaggctcttcttgctgtttcctacaacatgagg
caagtgtactggctttctgaggattttcatctctcacgacaggagtacta
gggttatagacacctactacctttgcctggtttttcctggattctggaga
ttgaactcaggtcctcatgcctatacaacaagtgctttacccacacagcc
atcttctcaacatacaggtttaagacagttaaaatgcaagaggcatcaac
aaggagagagaacagaaatcaggtatcagataatgtatttgacaccagga
agttatagttaagttaaaaatcatagttgtagatcaagaaaaaaaaactc
aaaaagctcaggaaataaccttacatacgttatattggactcaggaaaat
ttacagacttgattaaatgatttagatctatatatagataacaacggtga
atagtgttagatggacaatggcaacatgaataaaaaccaacaattggatt
aaagttgagtagaatatagattttgtacagttgaaacattttgtgagctg
tgaaagaaatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_49907310_49908381
seq2: B6Ng01-080C09.g_70_1133

seq1  GAATTCAATGAGAAGATTTGGAGCTATTTGCACATTTTATTGATCTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAGAAGATTTGGAGCTATTTGCACATTTTATTGATCTAGAG  50

seq1  ATCAATAAATATTGCTGTTTGTTTTTAAGTCTTGAAAGGCAGCTAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAAATATTGCTGTTTGTTTTTAAGTCTTGAAAGGCAGCTAGAGAG  100

seq1  AAGAGATAAAACTGTGCTTTCCTGGATGTTTGAAGAAAGCAGGAGGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATAAAACTGTGCTTTCCTGGATGTTTGAAGAAAGCAGGAGGAGTC  150

seq1  ATTGCCTGGCTTTTACTTTCTCTTAAGTTACAGAGGCAAATGTGTTGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTGGCTTTTACTTTCTCTTAAGTTACAGAGGCAAATGTGTTGTCC  200

seq1  ACAGTACAAGGAGTGTAAGGAAAGAAATTGGGAGGATAAATTATTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACAAGGAGTGTAAGGAAAGAAATTGGGAGGATAAATTATTTTTCT  250

seq1  TTGGATGTGTTATTCTTGATGTCCTACTAGTATGTCTTGCATAAGTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGTGTTATTCTTGATGTCCTACTAGTATGTCTTGCATAAGTGTTC  300

seq1  AGTGGACCATTTGATCTATGGTTATCTATTTCAGAGAGATCTGGACTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACCATTTGATCTATGGTTATCTATTTCAGAGAGATCTGGACTTCT  350

seq1  TATCTTGATATACATGTCATCAAAGTCTGACAGGAAGCACATGTCTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGATATACATGTCATCAAAGTCTGACAGGAAGCACATGTCTAGAA  400

seq1  TGAACCATAGAGTTGAGGAGACTCTACAGGCAATGGTGAATTTGTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCATAGAGTTGAGGAGACTCTACAGGCAATGGTGAATTTGTTTTAT  450

seq1  TTTTAGTGTGTGCATATGTGTGACATGTAAGTCAGGTCCGGGTCCTCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTGTGTGCATATGTGTGACATGTAAGTCAGGTCCGGGTCCTCCCT  500

seq1  TCACACCCTGTTTGAGACAGGCTCTTCTTGCTGTTTCCTACAACATGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCCTGTTTGAGACAGGCTCTTCTTGCTGTTTCCTACAACATGAGG  550

seq1  CAAGTGTACTGGC-TTCTGAGGATTTTCATCTCTCACGACAGGAGTACTA  599
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTACTGGCTTTCTGAGGATTTTCATCTCTCACGACAGGAGTACTA  600

seq1  GGGTTATAGACACCTACTACC-TTGCCTGGTTTTTCCTGGATTCTGGAGA  648
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGGTTATAGACACCTACTACCTTTGCCTGGTTTTTCCTGGATTCTGGAGA  650

seq1  TTGAACTCAGGTCCTCATGCCTATACAACAAGTGCTTTACCCACACAGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCAGGTCCTCATGCCTATACAACAAGTGCTTTACCCACACAGCC  700

seq1  ATCTTCTCAACATACAGGTTTAAGACAGTTAAAATGCAAGAGGCATCAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTCAACATACAGGTTTAAGACAGTTAAAATGCAAGAGGCATCAAC  750

seq1  AAGGAGAGAGAACAGAAATCAGGTATCAGATAATGTATTTGACACCAGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGAGAACAGAAATCAGGTATCAGATAATGTATTTGACACCAGGA  800

seq1  AGTTATAGTTAAGTTAAAAATCATAGTTGTAGATCAAGAAAAAAAAACTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAGTTAAGTTAAAAATCATAGTTGTAGATCAAGAAAAAAAAACTC  850

seq1  AAAAAGCTCAGGAAATAACCTTACATTACGTTATATTGGACTCAGGAAAA  898
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAAAGCTCAGGAAATAACCTTACA-TACGTTATATTGGACTCAGGAAAA  899

seq1  TTTACAGACTTGATAAAATGATTTAGATCTATATATTAGATAACAAACGT  948
      |||||||||||||| |||||||||||||||||||| ||||||||||  ||
seq2  TTTACAGACTTGATTAAATGATTTAGATCTATATA-TAGATAACAACGGT  948

seq1  GAATAGATGTGTAGATGGACAAAGGCAACATGAATAAAAACCAACAATTT  998
      |||||| ||| ||||||||||| |||||||||||||||||||||||| ||
seq2  GAATAG-TGT-TAGATGGACAATGGCAACATGAATAAAAACCAACAA-TT  995

seq1  GGATTAAAGTTGAGTAGAATTATTAGATTTTGTACAGTTGATACATTTTT  1048
      ||||||||||||||||||||   |||||||||||||||||| ||| ||||
seq2  GGATTAAAGTTGAGTAGAAT--ATAGATTTTGTACAGTTGAAACA-TTTT  1042

seq1  GTGAGCTGTTGAAAAGATATATTT  1072
      |||||||||   ||||| ||||||
seq2  GTGAGCTGT--GAAAGAAATATTT  1064