BAC Information

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BAC

Clone NameB6Ng01-080O01
Chromosome4 (Build37)10 (Build37)
Map Location 91,838,948 - 91,839,846104,054,189 - 104,054,362
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042274, Elavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik
Downstream geneLOC68280, LOC620269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080O01.bB6Ng01-080O01.g
ACCDH895892DH895893
length961652
definitionDH895892|Mus musculus domesticus DNA, BAC clone: B6Ng01-080O01, 5' end.DH895893|Mus musculus domesticus DNA, BAC clone: B6Ng01-080O01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(91,838,948 - 91,839,846)(104,054,189 - 104,054,362)
sequence
gaattcttttagatatataagaatctgatggtcaagagctgctgcaattt
aaggtcagttgtgtttgggtagaaccctgataatgaccccatgaccctac
agtaaagatatagagagaaattagaattagttttgaaaaacaacatcatg
tgctggaaatgtagaagagaatggttttttacagagagaagagagagaaa
gaaagagagagagagggagggagagagagagagaaagagaaagaggaaca
ttgcactacattaatcagaaatattatacatggtcaatgacagtctgatt
aagaaaagtaccttagggttgtaggtcagattctggaataaaaaacactg
aacactaatttgagtgaaatatattgaattgaaagaggtaggtagttctt
tttctgttattaaaaatagtttatttttctaatatgacagacacatcctg
attatgattttccctccctctagttcttacatttccccccaccttccctc
acattctgatctaccctctatctttcttatattagaaacaacacagactt
ctaacaggtaataataaaagagaaaaagataaaacaaaaccaagcatatt
agaataggacaaatagaaggaaaggagcccaagaaaagacacaggaaaca
aaatatagatgccaaatcccatttgttttgcacgctcgggagtcccacca
aaaatcaaaactggaaggaataaatgtacatacaaagtaggataaagcag
cactgtttaaaataaaataaaataaaaataaaataaaataaaataaaaat
aaaaagatttaaaaacagaaaaccccttacaggatactaatgagtaaaga
accctctaaagatgtttgtctttgttttctgctaccatctattgtaggca
ttcagcccaccctaataaattttctcccagtagacttctctgaaggaatt
attgttttctt
gaattcaggggcagagaggccagagtgtgtgggtattgaggcagggggaa
gggggagaaaatatggggtttctggaagaatggaaaatgggaaaggggat
aatatttgaaatgtagataaagaaaatatccggtaataataaaaaaaaaa
aaacagatacactgaatcttatagaagagaaagtggagaaaagcctctaa
tacatgggcacagaagaaaacttcctgaacagaacagcagtggcttatgc
tttaatatcaacaatcaataaaaatgggaccccttaaaatggaaaagctt
cagtaaataaaaggacactgtcaataggacaaaacggcaacccacgaata
gggaaaagatatttaccaactctacagccaatagagggcaattttgaaaa
tatacaaagaaaggaagaaggtagactccagaaaaccaaataattctatt
aaaaagtggtgtatagagttaaataaataattctcaactgaggaatcatg
aacggcccagaagcacttaaagaaatgttcaacatccttagtcatcaggg
aaatgcaaatcaaaacaaccctgagattcctcctcacaccagtcagaatg
gttaagatcaaaaattcaggtgacagcagatgttggcaagaatgtggaga
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_91838948_91839846
seq2: B6Ng01-080O01.b_47_950

seq1  GAATTCTTTTAGATATATAAGAATCTGATGGTCAAGAGCTGCTGCAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAGATATATAAGAATCTGATGGTCAAGAGCTGCTGCAATTT  50

seq1  AAGGTCAGTTGTGTTTGGGTAGAACCCTGATAATGACCCCATGACCCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAGTTGTGTTTGGGTAGAACCCTGATAATGACCCCATGACCCTAC  100

seq1  AGTAAAGATATAGAGAGAAATTAGAATTAGTTTTGAAAAACAACATCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGATATAGAGAGAAATTAGAATTAGTTTTGAAAAACAACATCATG  150

seq1  TGCTGGAAATGTAGAAGAGAATGGTTTTTTACAGAGAGAAGAGAGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAAATGTAGAAGAGAATGGTTTTTTACAGAGAGAAGAGAGAGAAA  200

seq1  GAAAGAGAGAGAGAGGGAGGGAGAGAGAGAGAGAAAGAGAAAGAGGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGAGAGAGGGAGGGAGAGAGAGAGAGAAAGAGAAAGAGGAACA  250

seq1  TTGCACTACATTAATCAGAAATATTATACATGGTCAATGACAGTCTGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTACATTAATCAGAAATATTATACATGGTCAATGACAGTCTGATT  300

seq1  AAGAAAAGTACCTTAGGGTTGTAGGTCAGATTCTGGAATAAAAAACACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGTACCTTAGGGTTGTAGGTCAGATTCTGGAATAAAAAACACTG  350

seq1  AACACTAATTTGAGTGAAATATATTGAATTGAAAGAGGTAGGTAGTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAATTTGAGTGAAATATATTGAATTGAAAGAGGTAGGTAGTTCTT  400

seq1  TTTCTGTTATTAAAAATAGTTTATTTTTCTAATATGACAGACACATCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTATTAAAAATAGTTTATTTTTCTAATATGACAGACACATCCTG  450

seq1  ATTATGATTTTCCCTCCCTCTAGTTCTTACATTTCCCCCCACCTTCCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGATTTTCCCTCCCTCTAGTTCTTACATTTCCCCCCACCTTCCCTC  500

seq1  ACATTCTGATCTACCCTCTATCTTTCTTATATTAGAAACAACACAGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGATCTACCCTCTATCTTTCTTATATTAGAAACAACACAGACTT  550

seq1  CTAACAGGTAATAATAAAAGAGAAAAAGATAAAACAAAACCAAGCATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGGTAATAATAAAAGAGAAAAAGATAAAACAAAACCAAGCATATT  600

seq1  AGAATAGGACAAATAGAAGGAAAGGAGCCCAAGAAAAGACACAGGAAAC-  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGAATAGGACAAATAGAAGGAAAGGAGCCCAAGAAAAGACACAGGAAACA  650

seq1  AAATATAGATGCCAAATCCCATTTG-TTTGCACGCTCGGGAGTCCCACCA  698
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAATATAGATGCCAAATCCCATTTGTTTTGCACGCTCGGGAGTCCCACCA  700

seq1  AAAATCAAAACTGGAAGGAAT-AATGTACATACAAAGTAGGATAAAGCAG  747
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAATCAAAACTGGAAGGAATAAATGTACATACAAAGTAGGATAAAGCAG  750

seq1  CACTGTTTAAAATAAAATAAAAT-AAAATAAAATAAAATAAAAT-AAAAT  795
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  CACTGTTTAAAATAAAATAAAATAAAAATAAAATAAAATAAAATAAAAAT  800

seq1  AAAAAGA-TTAAAAACAGAAAACCCCTTACAGGATACT-ATGAGTTAAGA  843
      ||||||| |||||||||||||||||||||||||||||| |||||| ||||
seq2  AAAAAGATTTAAAAACAGAAAACCCCTTACAGGATACTAATGAGTAAAGA  850

seq1  ACCCTCTAAAGATGTTGATCTTTGTTTTCTGCTAGCCATCTATTGTTAGG  893
      ||||||||||||||||  |||||||||||||||| |||||||||| ||||
seq2  ACCCTCTAAAGATGTTTGTCTTTGTTTTCTGCTA-CCATCTATTG-TAGG  898

seq1  CATTCA  899
      ||||||
seq2  CATTCA  904

seq1: chr10_104054189_104054362
seq2: B6Ng01-080O01.g_551_724 (reverse)

seq1  TTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTA  50
      ||||||||||| || |||| ||||||||||||||||||||||||||||||
seq2  TTTCTCCACATTCTTGCCAACATCTGCTGTCACCTGAATTTTTGATCTTA  50

seq1  GCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCAT  100
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACCATTCTGACTGGTGTGAGGAGGAATCTCAGGGTTGTTTTGATTTGCAT  100

seq1  TTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCA  150
      ||||||||||| |||||||||||||||||| || | ||||||||  ||| 
seq2  TTCCCTGATGACTAAGGATGTTGAACATTTCTTTAAGTGCTTCTGGGCCG  150

seq1  TTCGGTATTCCTCAGGTGAGAATT  174
      |||   ||||||||| ||||||||
seq2  TTCATGATTCCTCAGTTGAGAATT  174