BAC Information

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BAC

Clone NameB6Ng01-080P17
Chromosome4 (Build37)
Map Location 146,364,536 - 146,506,075
singlet/doubletdoublet
Overlap geneLOC100043034, LOC666514, LOC100041561, LOC100041570
Upstream gene1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498
Downstream geneOTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080P17.bB6Ng01-080P17.g
ACCDH895964DH895965
length1,128990
definitionDH895964|Mus musculus domesticus DNA, BAC clone: B6Ng01-080P17, 5' end.DH895965|Mus musculus domesticus DNA, BAC clone: B6Ng01-080P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,364,536 - 146,365,211)(146,505,088 - 146,506,075)
sequence
gaattcatacaggagagaaaccttacaaatgcaatgaatgtggcaaatgc
tttactgaaaaaagcagtctgagaattcatcagagaattcatacaggaga
gaaaccttacaaatgcagtgaatgtggcaaatgctttactgtaaaaagca
gtctgagaattcatcagaaaattcatacaggagagaaaccttacaaatgc
agtgaatgtgacaaatgctttaccaaaccatcccatcttagtattcatca
gagaattcatacaggagagaaaccttacaaatgcagtgaatgtgaaaaat
gctttactgtaaaaagcagtctgagaattcatcagaaaattcatacagga
gagaaaccttacaaatgcagtgaatgtgacaaatgctttaccaaaccatc
ccatcttagtattcatcagagaattcatacaggagagaaaccttacaaat
gcagtgaatgtgaaaaatgctttaatgaaaaaaacattctgaaaattcat
cagagaattcatacaggagagagaccttacaaatgtcgtgaatgtgacaa
atgcttttcccgaaaattccatcttggtattcatcagagaattcatacag
gaaagaaaccttacaaatgtagtgaatgtgacaaatgctttactacaaaa
ggcaatctgataattcatcagagaattcatacaagagagaaacctcacaa
atgtagtgaatgtgacaaatgctttacccagaaatcccatcttagtattc
atcagaaaattcatacaggagagaaaccttacaaatagattgtatgtgac
aaatacaatactcacaatgtcagtcttagaaatcatcagttatttcatac
agtagagaatctttataaatgaagtgaacgagacaatcctttaccaagat
atatcatctcaaaattcattagagaatacttagagaagacaaacttttca
aatatattgtaggtatgaatcctttcctttgggcctatttcctagactgt
acagtgaatacttacaggctagaactactcatgcattgtatgaagaaaat
atctttgactcattcagtcagaagagaaacatctaggaacttttaagggt
taagaactttgtggcaaatgttgtattc
gaattcttctaagcccacctacttatgggccttttaattaattagcttcc
cacttcttcacagcaatgtttggtgttttgaatttttgcttgcttgcttg
cttgcttgcttgcttattcgtttctttgcttttaatttgtctttttctta
aactcatctaatcgtgcaggaatcccacactccccatcaggaaccactcc
tccaactctgttgcaggctgccttccacacaacttcccaggacctactct
gcaaagcttcttcacaaagttgctgccagactagaccagagctggatgta
gtaggacactgcacctgggttctgaacccttcagatacaatggatcctgt
ctaacttctcatattgtgcgtgtagccctctggactataaatgcacaaaa
ttaagcagtccctttgaattctgatgctcagaacagatacccaaaacaaa
caaaaacgtagataaaatgtccttggctcaaaccacaaaccatagaggta
tcttataaggagcacaatttatgtgatatccaagacaaaggatggaaaac
ccacagtcatgatcaaggacattaaagtttgtaaacctgtgaatccactc
agacaggaacaaaatgaatcttggtcaagaaaataacaccagatgcctga
aggaaataaggacaatataaaatattaaaattatgttcaataggtgcata
gaaatgccacaaaaaaaatcctgaagagaaaatgcagtgaggcgaataaa
aatgatacatagagaacctgtgggagacagattatcagacttaaagaaaa
agtagaggaggtggatgcctcaatcaaagaaaatggtgaattaaaatgat
gttaggtcaagggacaatattatttactgcttgaaggatgaggcaataag
agaaactcctttggaaaactgtcctgatctttgtcacaaaaaaaagtaag
gaaaggagaaagaaagaagaagaagaaagaagagaaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146364536_146365211
seq2: B6Ng01-080P17.b_508_1176

seq1  GTGAAAAATGCTTTAATGAAAAAAACATTCTGAAAATTCATCAGAGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAATGCTTTAATGAAAAAAACATTCTGAAAATTCATCAGAGAATT  50

seq1  CATACAGGAGAGAGACCTTACAAATGTCGTGAATGTGACAAATGCTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGGAGAGAGACCTTACAAATGTCGTGAATGTGACAAATGCTTTTC  100

seq1  CCGAAAATTCCATCTTGGTATTCATCAGAGAATTCATACAGGAAAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAAATTCCATCTTGGTATTCATCAGAGAATTCATACAGGAAAGAAAC  150

seq1  CTTACAAATGTAGTGAATGTGACAAATGCTTTACTACAAAAGGCAATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAATGTAGTGAATGTGACAAATGCTTTACTACAAAAGGCAATCTG  200

seq1  ATAATTCATCAGAGAATTCATACAAGAGAGAAACCTCACAAATGTAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCATCAGAGAATTCATACAAGAGAGAAACCTCACAAATGTAGTGA  250

seq1  ATGTGACAAATGCTTTACCCAGAAATCCCATCTTAGTATTCATCAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACAAATGCTTTACCCAGAAATCCCATCTTAGTATTCATCAGAAAA  300

seq1  TTCATACAGGAGAGAAACCTTACAAATAGATTGTATGTGACAAATACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACAGGAGAGAAACCTTACAAATAGATTGTATGTGACAAATACAAT  350

seq1  ACTCACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTAGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTAGAGAA  400

seq1  TCTTTATAAATGAAGTGAACGAGACAATCCTTTACCAAGATATATCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATAAATGAAGTGAACGAGACAATCCTTTACCAAGATATATCATCT  450

seq1  CAAAATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTG  500

seq1  TAGGTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACAGTGAA  550
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  TAGGTATGAATCCTTTCCTTTGGGCCTATTTCCTAGACTGT-ACAGTGAA  549

seq1  TACTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAG-AAATATCTT  599
      |||||||||||||| ||||  ||||||||||||||||||| |||||||||
seq2  TACTTACAGGCTAG-AACT--ACTCATGCATTGTATGAAGAAAATATCTT  596

seq1  TGACTTCATTTCAGGTCAG-AGAG-AACATCTAAGAACTTTTTAGGGTAA  647
      |||| ||| |||| ||||| |||| |||||||| |||||||| ||||| |
seq2  TGAC-TCA-TTCA-GTCAGAAGAGAAACATCTAGGAACTTTTAAGGGTTA  643

seq1  AGAATTTTGTTGGGGAAAATGTTGTATTC  676
      |||| |||||   || |||||||||||||
seq2  AGAACTTTGT---GGCAAATGTTGTATTC  669

seq1: chr4_146505088_146506075
seq2: B6Ng01-080P17.g_68_1057 (reverse)

seq1  TTCTTTCT-TTCTTTCT-----TTCTTTCTTTCTTCCTTTCCTTACTTTT  44
      |||||||| ||||||||     ||||||||||| ||||||||||||  ||
seq2  TTCTTTCTCTTCTTTCTTCTTCTTCTTTCTTTC-TCCTTTCCTTAC--TT  47

seq1  TTTTTTGTGACAAAGATCAGGACAGTTTTCCAAAGGAGTTTCTCTTTATT  94
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTTTTGTGACAAAGATCAGGACAGTTTTCCAAAGGAGTTTCTC-TTATT  96

seq1  GCCTCATCCTTCAAGCAGTAAATAATATTGTCCCTTGACCTAACATCATT  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATCCTTCAAGCAGTAAATAATATTGTCCCTTGACCTAACATCATT  146

seq1  TTAATTCACCATTTTCTTTGATTGAGGCATCCACCTCCTCTACTTTTTCT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCACCATTTTCTTTGATTGAGGCATCCACCTCCTCTACTTTTTCT  196

seq1  TTAAGTCTGATAATCTGTCTCCCACAGGTTCTCTATGTATCATTTTTATT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCTGATAATCTGTCTCCCACAGGTTCTCTATGTATCATTTTTATT  246

seq1  CGCCTCACTGCATTTTCTCTTCAGGATTTTTTTTGTGGCATTTCTATGCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCACTGCATTTTCTCTTCAGGATTTTTTTTGTGGCATTTCTATGCA  296

seq1  CCTATTGAACATAATTTTAATATTTTATATTGTCCTTATTTCCTTCAGGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGAACATAATTTTAATATTTTATATTGTCCTTATTTCCTTCAGGC  346

seq1  ATCTGGTGTTATTTTCTTGACCAAGATTCATTTTGTTCCTGTCTGAGTGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTGTTATTTTCTTGACCAAGATTCATTTTGTTCCTGTCTGAGTGG  396

seq1  ATTCACAGGTTTACAAACTTTAATGTCCTTGATCATGACTGTGGGTTTTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGGTTTACAAACTTTAATGTCCTTGATCATGACTGTGGGTTTTC  446

seq1  CATCCTTTGTCTTGGATATCACATAAATTGTGCTCCTTATAAGATACCTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTGTCTTGGATATCACATAAATTGTGCTCCTTATAAGATACCTC  496

seq1  TATGGTTTGTGGTTTGAGCCAAGGACATTTTATCTACGTTTTTGTTTGTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTTGTGGTTTGAGCCAAGGACATTTTATCTACGTTTTTGTTTGTT  546

seq1  TTGGGTATCTGTTCTGAGCATCAGAATTCAAAGGGACTGCTTAATTTTGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTATCTGTTCTGAGCATCAGAATTCAAAGGGACTGCTTAATTTTGT  596

seq1  GCATTTATAGTCCAGAGGGCTACACGCACAATATGAGAAGTTAGACAGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATAGTCCAGAGGGCTACACGCACAATATGAGAAGTTAGACAGGA  646

seq1  TCCATTGTATCTGAAGGGTTCAGAACCCAGGTGCAGTGTCCTACTACATC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTATCTGAAGGGTTCAGAACCCAGGTGCAGTGTCCTACTACATC  696

seq1  CAGCTCTGGTCTAGTCTGGCAGCAACTTTGTGAAGAAGCTTTGCAGAGTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGGTCTAGTCTGGCAGCAACTTTGTGAAGAAGCTTTGCAGAGTA  746

seq1  GGTCCTGGGAAGTTGTGTGGAAGGCAGCCTGCAACAGAGTTGGAGGAGTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGGGAAGTTGTGTGGAAGGCAGCCTGCAACAGAGTTGGAGGAGTG  796

seq1  GTTCCTGATGGGGAGTGTGGGATTCCTGCACGATTAGATGAGTTTAAGAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGATGGGGAGTGTGGGATTCCTGCACGATTAGATGAGTTTAAGAA  846

seq1  AAAGACAAATTAAAAGCAAAGAAACGAATAAGCAAGCAAGCAAGCAAGCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAATTAAAAGCAAAGAAACGAATAAGCAAGCAAGCAAGCAAGCA  896

seq1  AGCAAGCAAAAATTCAAAACACCAAACATTGCTGTGAAGAAGTGGGAAGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCAAAAATTCAAAACACCAAACATTGCTGTGAAGAAGTGGGAAGC  946

seq1  TAATTAATTAAAAGGCCCATAAGTAGGTGGGCTTAGAAGAATTC  988
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATTAAAAGGCCCATAAGTAGGTGGGCTTAGAAGAATTC  990