BAC Information

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BAC

Clone NameB6Ng01-081A17
Chromosome4 (Build37)
Map Location 39,991,371 - 40,120,806
singlet/doubletdoublet
Overlap geneLOC384007, Aco1
Upstream gene1700009N14Rik, LOC435775, LOC329824, LOC621880
Downstream geneDdx58, Topors, Ndufb6, 4930509K18Rik, A930001M12Rik, Aptx, LOC665630, LOC622208, Dnaja1, Smu1, LOC100042305, B4galt1, LOC100039668, Spink4, Bag1, Chmp5, Nfx1, Aqp7, Aqp3, Nol6, Ube2r2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081A17.bB6Ng01-081A17.g
ACCDH896007DH896008
length1,2441,207
definitionDH896007|Mus musculus domesticus DNA, BAC clone: B6Ng01-081A17, 5' end.DH896008|Mus musculus domesticus DNA, BAC clone: B6Ng01-081A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,991,371 - 39,992,635)(40,119,583 - 40,120,806)
sequence
gaattcaaactggttctgtagttcaaccatagtccatcctagtgcacacg
catgcactcatgagtcttcagattgttcttcacacgactccaggcaggac
tattcatctttaaccaccatagattaaatcatattcagtgacagcaaagt
gcactgaggaagcggtgcctggctctaatgttcacagggtctcatttgaa
ttcaagggacacctgtcaagtaacattcttatcaacgggaatcttctctg
ggttaatcaaatcattgagaaaccactgattcctcaccccttatgtcgtg
gttattcaccagtgtagactactctaacacaggtttaagccaaaagtctt
tatcagccagctagcaactggtgagcttttaagcacagccacatcctggg
ttggcaaacctcagtcagccagaagtagaacttcagaagccaaaaatcaa
ggttaatatatttagggactttcccaaaactatggactttaatggactag
gtctttgttctccttttgacaggtggtgttgcctatgtgttgggttccag
ggcctgaatggtatttccatcatggttccaattctgttaaggtctggggt
ccagttacacttagagaatttgagaaggaggtctggtgtcaactgccatt
ggtcctcaggcagaggcattcctacctgcctcccgacatgcccccccccc
ccgctcccctgcctgcttcccaatgtatcccctctgctagttcttggtgc
tgcttcctccctccatcgcagaatcaatgcaggaacatcagcaagaaagc
cataatagaatctttttggcttagaatgatccccctcacaggaggggatc
tgtgtcaagtttccattatccccttttgctggcattctgatttgcttttg
tcttagctagggtttaacttctgtgaacagacaccatgatatattatagg
gacacatttaattgggtccagcttacaggttcagaggttcagtccatttg
tcatcgatgcaggagcatggcagcatccaggcaggcatgatgcaggcagg
aggagctgaaagttgtacatctttcatcttgaagctgctagctgaataat
ggccttccaggcagttagttatgaaggttttaaagccacgtccacattga
caaacctactccaacagccacacatcctaatgccctccttggcaagcaac
acatcaagcttaccacaaatggttgtggggagtctgtatcaggg
gaattcagctcaatactgtagatgcttcatccccaaagagtgattctgtt
ttaaagattggggatgggttatatgacagagatagcatgtggctaccaaa
gcctggaatatttacttctcaactttgtaagaacaaacaaacaaacaaac
aaacaaaaaggtattgatcctagtgagaaactgaacgcctgagtatttac
atgttagaggaaggcagagaaagacatggagaaaggagaggctcagctgg
agcagaacacggcaagactccagtgcaggcacccacatcatcagaccctt
tagatacatggcccattcctcagcttcaccagctcctgttcctcctgagg
cttccaggcctctggctcctgcctgcctgtctctccctgccctggcacat
gtgcatcggggaaactaatactctgctggccttcctacatctttctcctc
tatctgttcacagctcatctaccaaagcatttaccatcaatgcttcgcag
tccattagactcacttccatatctccactagtaccgagtctcctacatgt
gcacaccattatcagcctgccatattctaatacactataaatcctttgtt
taaaaagccagttcttcagcctgacctgagccttgcttttccagaccctt
catattctccagtccaactcttagggtcaccaccataagaatctctgaaa
attctacacgctgtcctctcttaggatgatattttggcttttctcgccct
tggtctgggtgcttcaggattctgaccgagggaccctctggagagccctc
tggctcccgtcaggattatctggtccttctcgggtgtgaccacgcttagt
aactgcattgaagtcctatattcattaaactttctctttgaatttactgg
cttcttggataaatatgggtacaacacagtcttgttaacttattttgaaa
agaacagcagagaagggattccaattattatttctaccagtacaggttga
gattgtgactcattacattggctggtggcctctcctcctgtgacctggag
cacccctggactctagtcacctgtttttctttaccttccacatcagagaa
acctgcacctgaagcatggattgaagagagaacaaatgctttgcctgaag
ttggccaaatgacacaaggctcaatgataagccgaatgttcaggctaaca
agctaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_39991371_39992635
seq2: B6Ng01-081A17.b_46_1289

seq1  GAATTCAAACTGGTTCTGTAGTTCAACCATAGTCCATCCTAGTGCACACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTGGTTCTGTAGTTCAACCATAGTCCATCCTAGTGCACACG  50

seq1  CATGCACTCATGAGTCTTCAGATTGTTCTTCACACGACTCCAGGCAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACTCATGAGTCTTCAGATTGTTCTTCACACGACTCCAGGCAGGAC  100

seq1  TATTCATCTTTAACCACCATAGATTAAATCATATTCAGTGACAGCAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATCTTTAACCACCATAGATTAAATCATATTCAGTGACAGCAAAGT  150

seq1  GCACTGAGGAAGCGGTGCCTGGCTCTAATGTTCACAGGGTCTCATTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGAGGAAGCGGTGCCTGGCTCTAATGTTCACAGGGTCTCATTTGAA  200

seq1  TTCAAGGGACACCTGTCAAGTAACATTCTTATCAACGGGAATCTTCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGGACACCTGTCAAGTAACATTCTTATCAACGGGAATCTTCTCTG  250

seq1  GGTTAATCAAATCATTGAGAAACCACTGATTCCTCACCCCTTATGTCGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATCAAATCATTGAGAAACCACTGATTCCTCACCCCTTATGTCGTG  300

seq1  GTTATTCACCAGTGTAGACTACTCTAACACAGGTTTAAGCCAAAAGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCACCAGTGTAGACTACTCTAACACAGGTTTAAGCCAAAAGTCTT  350

seq1  TATCAGCCAGCTAGCAACTGGTGAGCTTTTAAGCACAGCCACATCCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCCAGCTAGCAACTGGTGAGCTTTTAAGCACAGCCACATCCTGGG  400

seq1  TTGGCAAACCTCAGTCAGCCAGAAGTAGAACTTCAGAAGCCAAAAATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAACCTCAGTCAGCCAGAAGTAGAACTTCAGAAGCCAAAAATCAA  450

seq1  GGTTAATATATTTAGGGACTTTCCCAAAACTATGGACTTTAATGGACTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATATATTTAGGGACTTTCCCAAAACTATGGACTTTAATGGACTAG  500

seq1  GTCTTTGTTCTCCTTTTGACAGGTGGTGTTGCCTATGTGTTGGGTTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTTCTCCTTTTGACAGGTGGTGTTGCCTATGTGTTGGGTTCCAG  550

seq1  GGCCTGAATGGTATTTCCATCATGGTTCCAATTCTGTTAAGGTCTGGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAATGGTATTTCCATCATGGTTCCAATTCTGTTAAGGTCTGGGGT  600

seq1  CCAGTTACACTTAGAGAATTTGAGAAGGAGGTCTGGTGTCAACTGCCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTACACTTAGAGAATTTGAGAAGGAGGTCTGGTGTCAACTGCCATT  650

seq1  GGTCCTCAGGCAGAGGCATTCCTACCTGCCTCCCGACATGCCCCCCCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCAGGCAGAGGCATTCCTACCTGCCTCCCGACATGCCCCCCCCCC  700

seq1  CCGCTCCCCTGCCTGCTTCCCAATGTATCCCCTCTGCTAGTTCTTGGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCCCCTGCCTGCTTCCCAATGTATCCCCTCTGCTAGTTCTTGGTGC  750

seq1  TGCTTCCTCCCTCCATCGCAGAATCAATGCAGGAACATCAGCAAGAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTCCCTCCATCGCAGAATCAATGCAGGAACATCAGCAAGAAAGC  800

seq1  CATAATAGAATCTTTTTGGCTTAGAATGATCCCCCTCACAGGAGGGGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAGAATCTTTTTGGCTTAGAATGATCCCCCTCACAGGAGGGGATC  850

seq1  TGTGTCAAGTTTCCATTATCCCCTTTTGCTGGCATTCTGATTTGCTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAAGTTTCCATTATCCCCTTTTGCTGGCATTCTGATTTGCTTTTG  900

seq1  TCTTAGCTAGGGTTTAACTTCTGTGAACAGACACCATGATAATATTATAG  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTTAGCTAGGGTTTAACTTCTGTGAACAGACACCATGAT-ATATTATAG  949

seq1  GGACAACATTTAATTGGGTCCAGCTTACAGGTTCAGAGGTTCAGTCCA-T  999
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGAC-ACATTTAATTGGGTCCAGCTTACAGGTTCAGAGGTTCAGTCCATT  998

seq1  TGTCATCGATGCAGGAGCATGGCAGCATCCAGGCAGGCATGATGCAGGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCGATGCAGGAGCATGGCAGCATCCAGGCAGGCATGATGCAGGCA  1048

seq1  GGAGGAGCTGAAAGTTGTACATC-TTCATCTGAAGGCTGCTAGCTGAATA  1098
      ||||||||||||||||||||||| |||||||  | |||||||||||||||
seq2  GGAGGAGCTGAAAGTTGTACATCTTTCATCTTGAAGCTGCTAGCTGAATA  1098

seq1  CTGG-CTTCCAGGCAGTTAG-TATGAGGGTTTTAAAGCCCACGTCCACAG  1146
       ||| ||||||||||||||| ||||| |||||||||| ||||||||||| 
seq2  ATGGCCTTCCAGGCAGTTAGTTATGAAGGTTTTAAAG-CCACGTCCACAT  1147

seq1  TGACACACCTACTCCAACAAGGCCACACATCCTAATAGTGCCACTCCCTG  1196
      ||||| |||||||||||||  ||||||||||||||   |||| |||| ||
seq2  TGACAAACCTACTCCAACA--GCCACACATCCTAA---TGCC-CTCCTTG  1191

seq1  GGCCAAGCATATACAAACCATCACAGCTTTCACCCACCA-AAATGGTTTG  1245
      |  ||||||   |||   ||||| |||||      |||| ||||||||  
seq2  G--CAAGCA---ACA---CATCA-AGCTT------ACCACAAATGGTT--  1224

seq1  GTGGGAATGCTGTATCAGGG  1265
      ||||| |  |||||||||||
seq2  GTGGGGAGTCTGTATCAGGG  1244

seq1: chr4_40119583_40120806
seq2: B6Ng01-081A17.g_68_1274 (reverse)

seq1  GTTAGCTTGTTAGCCTGAGCATTTCTGGCTCTTAATCATTTTGTGAAGAC  50
      |||||||||||||||||| ||||   |||   | ||||||       || 
seq2  GTTAGCTTGTTAGCCTGAACATT--CGGC---TTATCATT-------GAG  38

seq1  CTCTGTGGTCATTTTGCCCAACATCTTCAGGGGCAAGCATTCTGT--TCT  98
      |  ||| ||||||| ||    || ||||| ||  ||||||| |||  |||
seq2  CCTTGT-GTCATTTGGC----CAACTTCA-GGCAAAGCATT-TGTTCTCT  81

seq1  CTTCATTCCATGCTTCAGCTGCAGTGTCCTCCTGATGCTGGAAGTTAA--  146
      ||||| |||||||||||| |||||  | || |||||| |||||| |||  
seq2  CTTCAATCCATGCTTCAGGTGCAGGTTTCT-CTGATG-TGGAAGGTAAAG  129

seq1  GAAAACAGGTGACTAGAGTCCAGGGGTGCTCATGTGTCACAGGA-GAGAG  195
       ||||||||||||||||||||||||||||||  | ||||||||| |||||
seq2  AAAAACAGGTGACTAGAGTCCAGGGGTGCTCCAG-GTCACAGGAGGAGAG  178

seq1  GCCACCAGCC-ATGTAATGAGTCACAATCTC-ACCTGTACTGGTAGAATT  243
      |||||||||| |||||||||||||||||||| |||||||||||||||| |
seq2  GCCACCAGCCAATGTAATGAGTCACAATCTCAACCTGTACTGGTAGAAAT  228

seq1  AATATTTGGAATCCCTTCTCTGCTGTTCTTTTCAAAATAAGTTTAACAGA  293
      |||| |||||||||||||||||||||||||||||||||||| ||||||  
seq2  AATAATTGGAATCCCTTCTCTGCTGTTCTTTTCAAAATAAG-TTAACAAG  277

seq1  CCTGTGTTGTACCCATATTTATCCAAGAAGCCAGTAAATTTCAAAGAGAA  343
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACTGTGTTGTACCCATATTTATCCAAGAAGCCAGTAAA-TTCAAAGAGAA  326

seq1  AGTTTAATGAATATAGGACTTCAATGCAGTTACTAAGCGTGGTCACACCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAATGAATATAGGACTTCAATGCAGTTACTAAGCGTGGTCACACCC  376

seq1  GAGAAGGACCAGATAATCCTGACGGGAGCCAGAGGGCTCTCCAGAGGGTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGACCAGATAATCCTGACGGGAGCCAGAGGGCTCTCCAGAGGGTC  426

seq1  CCTCGGTCAGAATCCTGAAGCACCCAGACCAAGGGCGAGAAAAGCCAAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGTCAGAATCCTGAAGCACCCAGACCAAGGGCGAGAAAAGCCAAAA  476

seq1  TATCATCCTAAGAGAGGACAGCGTGTAGAATTTTCAGAGATTCTTATGGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCCTAAGAGAGGACAGCGTGTAGAATTTTCAGAGATTCTTATGGT  526

seq1  GGTGACCCTAAGAGTTGGACTGGAGAATATGAAGGGTCTGGAAAAGCAAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCCTAAGAGTTGGACTGGAGAATATGAAGGGTCTGGAAAAGCAAG  576

seq1  GCTCAGGTCAGGCTGAAGAACTGGCTTTTTAAACAAAGGATTTATAGTGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGTCAGGCTGAAGAACTGGCTTTTTAAACAAAGGATTTATAGTGT  626

seq1  ATTAGAATATGGCAGGCTGATAATGGTGTGCACATGTAGGAGACTCGGTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATATGGCAGGCTGATAATGGTGTGCACATGTAGGAGACTCGGTA  676

seq1  CTAGTGGAGATATGGAAGTGAGTCTAATGGACTGCGAAGCATTGATGGTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGAGATATGGAAGTGAGTCTAATGGACTGCGAAGCATTGATGGTA  726

seq1  AATGCTTTGGTAGATGAGCTGTGAACAGATAGAGGAGAAAGATGTAGGAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTGGTAGATGAGCTGTGAACAGATAGAGGAGAAAGATGTAGGAA  776

seq1  GGCCAGCAGAGTATTAGTTTCCCCGATGCACATGTGCCAGGGCAGGGAGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCAGAGTATTAGTTTCCCCGATGCACATGTGCCAGGGCAGGGAGA  826

seq1  GACAGGCAGGCAGGAGCCAGAGGCCTGGAAGCCTCAGGAGGAACAGGAGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCAGGCAGGAGCCAGAGGCCTGGAAGCCTCAGGAGGAACAGGAGC  876

seq1  TGGTGAAGCTGAGGAATGGGCCATGTATCTAAAGGGTCTGATGATGTGGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAGCTGAGGAATGGGCCATGTATCTAAAGGGTCTGATGATGTGGG  926

seq1  TGCCTGCACTGGAGTCTTGCCGTGTTCTGCTCCAGCTGAGCCTCTCCTTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCACTGGAGTCTTGCCGTGTTCTGCTCCAGCTGAGCCTCTCCTTT  976

seq1  CTCCATGTCTTTCTCTGCCTTCCTCTAACATGTAAATACTCAGGCGTTCA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGTCTTTCTCTGCCTTCCTCTAACATGTAAATACTCAGGCGTTCA  1026

seq1  GTTTCTCACTAGGATCAATACCTTTTTGTTTGTTTGTTTGTTTGTTTGTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCACTAGGATCAATACCTTTTTGTTTGTTTGTTTGTTTGTTTGTT  1076

seq1  CTTACAAAGTTGAGAAGTAAATATTCCAGGCTTTGGTAGCCACATGCTAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAAGTTGAGAAGTAAATATTCCAGGCTTTGGTAGCCACATGCTAT  1126

seq1  CTCTGTCATATAACCCATCCCCAATCTTTAAAACAGAATCACTCTTTGGG  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCATATAACCCATCCCCAATCTTTAAAACAGAATCACTCTTTGGG  1176

seq1  GATGAAGCATCTACAGTATTGAGCTGAATTC  1224
      |||||||||||||||||||||||||||||||
seq2  GATGAAGCATCTACAGTATTGAGCTGAATTC  1207