BAC Information

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BAC

Clone NameB6Ng01-081D04
Chromosome4 (Build37)
Map Location 128,082,278 - 128,243,856
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667296, LOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik
Downstream geneZscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081D04.bB6Ng01-081D04.g
ACCDH896120DH896121
length1,1711,009
definitionDH896120|Mus musculus domesticus DNA, BAC clone: B6Ng01-081D04, 5' end.DH896121|Mus musculus domesticus DNA, BAC clone: B6Ng01-081D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,242,665 - 128,243,856)(128,082,278 - 128,083,292)
sequence
gaattcattaatgacctaaacacagtgacattgtctaattcagtggttct
caaccttcctgtcgctgccgccctttaatacagttcctcacgtgatggtg
accccccaacataaaattttttgttgccttttcataactgtaattttgct
actgttatgaattataatgtaaatatctgatatgcaggatggtcttaggc
ctgtgaaagggacacttgacccacaaaggggtcgtgatccacaggttgag
aaacactggcctaaatgactctgagacacccgccaggagctggagagaat
gggatttttgctccgttctcttgattaaggagctgccaggtcctctgctg
tggttgcgggctgttggaagccaagaggcgagcaccaattcaggaggctg
gggcactgggtgcttcatctggtgctgcccaggcacagacggcagcatcc
agattagacacacacatcttcttgttgagactcccctcccttcctgcctt
tggtgcccactgtagacctgggtattctggtagcaggtgcagcggacatc
agggtcagagagattcgcgtttacacctacacctcctgcgtattttgtgg
ctcatgcgtccatcttccctgacccctgaatggaaacagcgagtcctgct
ttggtggtgtttgaagaactagaagtgacacataaagagtcaggcacgga
gaataagtcagcaagcggtggctgccaccttttgggagccagggctggtt
tgctcctgtcctctccagggtgtgctgtctggtctgtagaggtctttttc
tcttcttgtggtcagctgacagtcagaggtgatgccaggctcctgagtca
gattcctgctgtatcccccactccaccatgactttacccttcgtttccaa
agatgcccaggaccccaaataacttcttaactcactgggcttagaactca
gtgtcatatggttaaaaaaacattgcattgattacctaatatatctgaga
cgtcccccttttctcaggtaatccttgctattcgatgttgcaatggggcc
accctgcagccaggtgcctctgcatgctacctcccatgagatgtgacctc
tactccatctcagtcctacacatgggaacacattggttgagagcatgtgc
tttctcatcactccctgggtt
gaattcaaagagagacgagaaaagacagatgcctgtttgtctatttactt
gcgtgttttggagcatctccaggtgtagtccccaaactccaaactctaca
tccttttgcctcagcctcccatatgctgggatggcagggacatacaccca
gtccaggaaaagatggtttctaaagaagaggaactgggcatggtggctca
agttcctgggaactaagcaagaagaatgtcacgagttcatggcctcagct
actcagtgagctccagaccaacatgagctacctgattgcgatctcatctc
aatcaatcaaccaatcaatccataaaagaaaataaggaaattactaggaa
aaaacctactagcagtagcattgtcagcaaaatcaactcttcttttttaa
agtgactaataaaataaaccttgcaggactgatcacaaagggaagtgatg
gatgtataataccggagggaagaggatataaatatagatgtggtctggat
tatggtaataaggaaataggaacagctgtgagccaagaaatcagaaagca
aaagcaatggaaacaggtgtttggtagattagcaaatgctaatgtgtggg
actgaggggatggctcagcagtcaagagtctctgctgatcttctacggga
cccaagctgagctccaagcacacatggcttacagttcaaaactgtttata
ccttcagctacaagagatccagcacccccttctggcctctgctggcactg
cactcacgtgcacatacccacactgagatacacgtgaccacatcattaga
agattttaaaagcactactatttggaaagtgagaactgctgggtggttgt
ggtatatgccttgattcccagaactcaggaggcagaggtaggtggatctc
tgtgagtttgagcatctggactacagagtgagtccagatcagctagggct
gcagagagaaacgctgtctcaaaaaaaaaaaaaatactgctcctagaatg
aggaggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_128242665_128243856
seq2: B6Ng01-081D04.b_45_1215 (reverse)

seq1  AACCCAGAGGAGATGATGAGAAAAGCATCATTGCCTCTCAAACCAATGTG  50
      ||||||| |||| ||||||| |||||| |||   ||||| ||||||||||
seq2  AACCCAG-GGAG-TGATGAG-AAAGCA-CAT--GCTCTC-AACCAATGTG  43

seq1  TCCCCATGTGTAGGGACATGAAGAATGAGTAAGAAGGTCACATCTCATGG  100
      | |||||||||| |||| || |||  |||||   ||||||||||||||||
seq2  TTCCCATGTGTA-GGAC-TG-AGATGGAGTA--GAGGTCACATCTCATGG  88

seq1  GAGGTAGCATGCAGAAGCCACCTGGCTGCAGGGGTGGCCCCATTTGCACA  150
      |||||||||||||| || |||||||||||| |||||||||||||   |||
seq2  GAGGTAGCATGCAG-AGGCACCTGGCTGCA-GGGTGGCCCCATTGCAACA  136

seq1  TCG-ATAGCAAGGATTACCTGGAAGAAAAGGGGGGACGTTCTTCAGATAT  199
      ||| |||||||||||||||||  |||||| |||||||||   ||||||||
seq2  TCGAATAGCAAGGATTACCTG--AGAAAA-GGGGGACGT--CTCAGATAT  181

seq1  AATTAGGTAATCAATGCAATTGTTTTTTTAACCATAATGACACTGAGTTC  249
       |||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  -ATTAGGTAATCAATGCAA-TGTTTTTTTAACCAT-ATGACACTGAGTTC  228

seq1  TAAGCCCAGTGAGTTAAGAAGTTATTTGGGGTCCTGGGCATCTTTGGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCCAGTGAGTTAAGAAGTTATTTGGGGTCCTGGGCATCTTTGGAAA  278

seq1  CGAAGGGTAAAGTCATGGTGGAGTGGGGGATACAGCAGGAATCTGACTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGGTAAAGTCATGGTGGAGTGGGGGATACAGCAGGAATCTGACTCA  328

seq1  GGAGCCTGGCATCACCTCTGACTGTCAGCTGACCACAAGAAGAGAAAAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGGCATCACCTCTGACTGTCAGCTGACCACAAGAAGAGAAAAAG  378

seq1  ACCTCTACAGACCAGACAGCACACCCTGGAGAGGACAGGAGCAAACCAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTACAGACCAGACAGCACACCCTGGAGAGGACAGGAGCAAACCAGC  428

seq1  CCTGGCTCCCAAAAGGTGGCAGCCACCGCTTGCTGACTTATTCTCCGTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCCCAAAAGGTGGCAGCCACCGCTTGCTGACTTATTCTCCGTGC  478

seq1  CTGACTCTTTATGTGTCACTTCTAGTTCTTCAAACACCACCAAAGCAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTTTATGTGTCACTTCTAGTTCTTCAAACACCACCAAAGCAGGA  528

seq1  CTCGCTGTTTCCATTCAGGGGTCAGGGAAGATGGACGCATGAGCCACAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTGTTTCCATTCAGGGGTCAGGGAAGATGGACGCATGAGCCACAAA  578

seq1  ATACGCAGGAGGTGTAGGTGTAAACGCGAATCTCTCTGACCCTGATGTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGCAGGAGGTGTAGGTGTAAACGCGAATCTCTCTGACCCTGATGTCC  628

seq1  GCTGCACCTGCTACCAGAATACCCAGGTCTACAGTGGGCACCAAAGGCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACCTGCTACCAGAATACCCAGGTCTACAGTGGGCACCAAAGGCAG  678

seq1  GAAGGGAGGGGAGTCTCAACAAGAAGATGTGTGTGTCTAATCTGGATGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAGGGGAGTCTCAACAAGAAGATGTGTGTGTCTAATCTGGATGCT  728

seq1  GCCGTCTGTGCCTGGGCAGCACCAGATGAAGCACCCAGTGCCCCAGCCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCTGTGCCTGGGCAGCACCAGATGAAGCACCCAGTGCCCCAGCCTC  778

seq1  CTGAATTGGTGCTCGCCTCTTGGCTTCCAACAGCCCGCAACCACAGCAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTGGTGCTCGCCTCTTGGCTTCCAACAGCCCGCAACCACAGCAGA  828

seq1  GGACCTGGCAGCTCCTTAATCAAGAGAACGGAGCAAAAATCCCATTCTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGGCAGCTCCTTAATCAAGAGAACGGAGCAAAAATCCCATTCTCT  878

seq1  CCAGCTCCTGGCGGGTGTCTCAGAGTCATTTAGGCCAGTGTTTCTCAACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCTGGCGGGTGTCTCAGAGTCATTTAGGCCAGTGTTTCTCAACC  928

seq1  TGTGGATCACGACCCCTTTGTGGGTCAAGTGTCCCTTTCACAGGCCTAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATCACGACCCCTTTGTGGGTCAAGTGTCCCTTTCACAGGCCTAAG  978

seq1  ACCATCCTGCATATCAGATATTTACATTATAATTCATAACAGTAGCAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCTGCATATCAGATATTTACATTATAATTCATAACAGTAGCAAAA  1028

seq1  TTACAGTTATGAAAAGGCAACAAAAAATTTTATGTTGGGGGGTCACCATC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTATGAAAAGGCAACAAAAAATTTTATGTTGGGGGGTCACCATC  1078

seq1  ACGTGAGGAACTGTATTAAAGGGCGGCAGCGACAGGAAGGTTGAGAACCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAGGAACTGTATTAAAGGGCGGCAGCGACAGGAAGGTTGAGAACCA  1128

seq1  CTGAATTAGACAATGTCACTGTGTTTAGGTCATTAATGAATTC  1192
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTAGACAATGTCACTGTGTTTAGGTCATTAATGAATTC  1171

seq1: chr4_128082278_128083292
seq2: B6Ng01-081D04.g_66_1074

seq1  GAATTCAAAGAGAGACGAGAAAAGACAGATGCCTGTTTGTCTATTTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAGAGACGAGAAAAGACAGATGCCTGTTTGTCTATTTACTT  50

seq1  GCGTGTTTTGGAGCATCTCCAGGTGTAGTCCCCAAACTCCAAACTCTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTTTTGGAGCATCTCCAGGTGTAGTCCCCAAACTCCAAACTCTACA  100

seq1  TCCTTTTGCCTCAGCCTCCCATATGCTGGGATGGCAGGGACATACACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGCCTCAGCCTCCCATATGCTGGGATGGCAGGGACATACACCCA  150

seq1  GTCCAGGAAAAGATGGTTTCTAAAGAAGAGGAACTGGGCATGGTGGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGAAAAGATGGTTTCTAAAGAAGAGGAACTGGGCATGGTGGCTCA  200

seq1  AGTTCCTGGGAACTAAGCAAGAAGAATGTCACGAGTTCATGGCCTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGGGAACTAAGCAAGAAGAATGTCACGAGTTCATGGCCTCAGCT  250

seq1  ACTCAGTGAGCTCCAGACCAACATGAGCTACCTGATTGCGATCTCATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTGAGCTCCAGACCAACATGAGCTACCTGATTGCGATCTCATCTC  300

seq1  AATCAATCAACCAATCAATCCATAAAAGAAAATAAGGAAATTACTAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATCAACCAATCAATCCATAAAAGAAAATAAGGAAATTACTAGGAA  350

seq1  AAAACCTACTAGCAGTAGCATTGTCAGCAAAATCAACTCTTCTTTTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTACTAGCAGTAGCATTGTCAGCAAAATCAACTCTTCTTTTTTAA  400

seq1  AGTGACTAATAAAATAAACCTTGCAGGACTGATCACAAAGGGAAGTGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTAATAAAATAAACCTTGCAGGACTGATCACAAAGGGAAGTGATG  450

seq1  GATGTATAATACCGGAGGGAAGAGGATATAAATATAGATGTGGTCTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATAATACCGGAGGGAAGAGGATATAAATATAGATGTGGTCTGGAT  500

seq1  TATGGTAATAAGGAAATAGGAACAGCTGTGAGCCAAGAAATCAGAAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTAATAAGGAAATAGGAACAGCTGTGAGCCAAGAAATCAGAAAGCA  550

seq1  AAAGCAATGGAAACAGGTGTTTGGTAGATTAGCAAATGCTAATGTGTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATGGAAACAGGTGTTTGGTAGATTAGCAAATGCTAATGTGTGGG  600

seq1  ACTGAGGGGATGGCTCAGCAGTCAAGAGTCTCTGCTGATCTTCTACGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGGGATGGCTCAGCAGTCAAGAGTCTCTGCTGATCTTCTACGGGA  650

seq1  CCCAAGCTGAGCTCCAAGCACACATGGCTTACAGTTCAAAACTGTTTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCTGAGCTCCAAGCACACATGGCTTACAGTTCAAAACTGTTTATA  700

seq1  CCTTCAGCTACAAGAGATCCAGCACCCCCTTCTGGCCTCTGCTGGCACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGCTACAAGAGATCCAGCACCCCCTTCTGGCCTCTGCTGGCACTG  750

seq1  CACTCACGTGCACATACCCACACTGAGATACACGTGACCACATCATTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACGTGCACATACCCACACTGAGATACACGTGACCACATCATTAGA  800

seq1  AGATTTTAAAAGCACTACTA-TTGGAAAGTGAGAACTGCTGGGTGGTGGT  849
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  AGATTTTAAAAGCACTACTATTTGGAAAGTGAGAACTGCTGGGTGGTTGT  850

seq1  GGTATATGCCTTTGATTCCCAGAACTCAGGAGGCAGAGGTAGGTGGATCT  899
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGTATATGCC-TTGATTCCCAGAACTCAGGAGGCAGAGGTAGGTGGATCT  899

seq1  CTGTGAGTTTGAGGCCATCCTGGACTACAGAGTGAGTCCAGATCAGCTAG  949
      |||||||||||||  ||| |||||||||||||||||||||||||||||||
seq2  CTGTGAGTTTGAG--CAT-CTGGACTACAGAGTGAGTCCAGATCAGCTAG  946

seq1  GGCTGCAGAGAGAAACGCTGTCTCAAAAAAAAAAAAAAAATACTGCTACT  999
      ||||||||||||||||||||||||  ||||||||||||||||||||| ||
seq2  GGCTGCAGAGAGAAACGCTGTCTC--AAAAAAAAAAAAAATACTGCTCCT  994

seq1  AAGAAAGAGGAGGAGT  1015
       |||| ||||||||||
seq2  -AGAATGAGGAGGAGT  1009