BAC Information

Click to search

BAC

Clone NameB6Ng01-081H04
Chromosome4 (Build37)
Map Location 90,872,576 - 91,004,014
singlet/doubletdoublet
Overlap geneLOC100042274, Elavl2
Upstream geneZfp352, LOC619842, LOC435792, Ppia-ps4_804.1, LOC664840, LOC664848
Downstream geneLOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081H04.bB6Ng01-081H04.g
ACCDH896300DH896301
length4701,133
definitionDH896300|Mus musculus domesticus DNA, BAC clone: B6Ng01-081H04, 5' end.DH896301|Mus musculus domesticus DNA, BAC clone: B6Ng01-081H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,872,576 - 90,873,051)(91,002,872 - 91,004,014)
sequence
caccatacgtatcctaacatttaatttttaaatagcagcagccttgttat
catgcaggacaagggtcctaaacaccactatgctctgcaaaagctccaga
aactatgggaaaacttgggcttggcaaatgacattcacccgttttgtttt
ttgtttgtttgtttttgttggttggttggttggttggttggttggtattt
ttagtgagccagagcaatgcagcaatgatagcaaaatttcatacatctga
agtgattaaaaaatacatagcagctgctggaaacacacatggaaatcacc
ttgaagaacagcagcctttgcttgtggacacaggtcagagatgggctgaa
acctttgagaatttattataaagcaggggcaagatggttagtcatctgaa
attggagggatagctataatactatgtttccttatagattgctcagattg
gaactagttactgattttaa
gaattcctctgtgatctctgacgggtattcattatccccgttagatctat
ctttccaggacaaaacaagcaagcagggactggatctatcacatctttga
gagcacttctctagccaaagaatcttagagacagtatctcctttgcagaa
aaggcttttttaaaattctgctctgcagctgccacttttgtgcccgtgtt
aatgggttatcctagtgttgcagatgtttccttaaacaaacaacaaacca
accctatgttttctggcattaaaatatatattccaggaatgttatgccat
tgatctcagagaacaaaagtccgcacccaaaaaaggggttaaatgagaaa
cttcagggcatggtggtgtaagcatttaatccctgtagatgcaagcagat
ttctgtgggttcagggtcagcctgatctacttagcaagttccctaacagc
caaggttctatacagagttcccacaactcgccataccctccaaaagaaag
aaaagaaaagaaaaaaaaaactttagctcttcgcatagcctaaaaaaaat
tctaagtgatattttgcaaaggcttaaaagatccaagaaattatttttat
agctgtataacttccttccctttagaatgtttacttttcaaagggaagga
ggaggaggcacattagtgttgactcaggtttctaccatactgactagaag
cagtagctcatagactataagaaaggatgatagaacttcttgccatttaa
gtgtggatctgaaggtctggcagctaaagattaaccactaagcatgagaa
gtcatcttaagacagagtaaggcacacaattgcaggtgaccaggctttat
cactccacaggttgtttatcattcaacagttgttgtttttgtaaacaatg
ctgactccagcacttcagctgagaatgtatagccaaaacacacgatttta
tatatgaatctaattccactatataatccgtaaactaagaaaccatttat
gaaatgatggctgcttggtgtgtagagtacattcaagctgaccatttagt
tatgctgcagcttcgtctgatactggatagctgggatactgagaacctca
gtagaacgaacatggctcaacagttgcctgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_90872576_90873051
seq2: B6Ng01-081H04.b_44_519

seq1  GAATTCCACCATACGTATCCTAACATTTAATTTTTAAATAGCAGCAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCATACGTATCCTAACATTTAATTTTTAAATAGCAGCAGCCT  50

seq1  TGTTATCATGCAGGACAAGGGTCCTAAACACCACTATGCTCTGCAAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCATGCAGGACAAGGGTCCTAAACACCACTATGCTCTGCAAAAGC  100

seq1  TCCAGAAACTATGGGAAAACTTGGGCTTGGCAAATGACATTCACCCGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAACTATGGGAAAACTTGGGCTTGGCAAATGACATTCACCCGTTT  150

seq1  TGTTTTTTGTTTGTTTGTTTTTGTTGGTTGGTTGGTTGGTTGGTTGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTGTTTGTTTGTTTTTGTTGGTTGGTTGGTTGGTTGGTTGGTTG  200

seq1  GTATTTTTAGTGAGCCAGAGCAATGCAGCAATGATAGCAAAATTTCATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTAGTGAGCCAGAGCAATGCAGCAATGATAGCAAAATTTCATAC  250

seq1  ATCTGAAGTGATTAAAAAATACATAGCAGCTGCTGGAAACACACATGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAGTGATTAAAAAATACATAGCAGCTGCTGGAAACACACATGGAA  300

seq1  ATCACCTTGAAGAACAGCAGCCTTTGCTTGTGGACACAGGTCAGAGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTTGAAGAACAGCAGCCTTTGCTTGTGGACACAGGTCAGAGATGG  350

seq1  GCTGAAACCTTTGAGAATTTATTATAAAGCAGGGGCAAGATGGTTAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAACCTTTGAGAATTTATTATAAAGCAGGGGCAAGATGGTTAGTCA  400

seq1  TCTGAAATTGGAGGGATAGCTATAATACTATGTTTCCTTATAGATTGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATTGGAGGGATAGCTATAATACTATGTTTCCTTATAGATTGCTC  450

seq1  AGATTGGAACTAGTTACTGATTTTAA  476
      ||||||||||||||||||||||||||
seq2  AGATTGGAACTAGTTACTGATTTTAA  476

seq1: chr4_91002872_91004014
seq2: B6Ng01-081H04.g_65_1197 (reverse)

seq1  GCTCA-GCAACTGTTGAAGCATGGTCTGTTCCTACTGA-GTTCTCAGTAT  48
      ||||| |||||||||||  |||| || ||| ||||||| |||||||||||
seq2  GCTCAGGCAACTGTTGAGCCATGTTC-GTT-CTACTGAGGTTCTCAGTAT  48

seq1  CCCAGCCTAATCCAGTATCAGACGGAAGCTGCAGCCATAACCTAAATGGT  98
      ||||||   |||||||||||||| |||||||||| ||||| |||||||||
seq2  CCCAGC--TATCCAGTATCAGAC-GAAGCTGCAG-CATAA-CTAAATGGT  93

seq1  CAGCTGGAATGTACTCTACCACAACCCAAGCAGCCATCATTTCATAAATG  148
      ||||| |||||||||||| ||||  |||||||||||||||||||||||||
seq2  CAGCTTGAATGTACTCTA-CACA--CCAAGCAGCCATCATTTCATAAATG  140

seq1  GTTTCTTAGTTTACGGATTTATATAGTGGAATTAAGATTCATATATAAAA  198
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  GTTTCTTAGTTTACGGA-TTATATAGTGGAATT-AGATTCATATATAAAA  188

seq1  TCGTGTGTTTTGGCTATACATTCTCAGCTGAAGTGCTGGAGTCAGCATTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTGTTTTGGCTATACATTCTCAGCTGAAGTGCTGGAGTCAGCATTG  238

seq1  TTTACAAAAACAACAACTGTTGAATGATAAACAACCTGTGGAGTGATAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAAAACAACAACTGTTGAATGATAAACAACCTGTGGAGTGATAAA  288

seq1  GCCTGGTCACCTGCAATTGTGTGCCTTACTCTGTCTTAAGATGACTTCTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCACCTGCAATTGTGTGCCTTACTCTGTCTTAAGATGACTTCTC  338

seq1  ATGCTTAGTGGTTAATCTTTAGCTGCCAGACCTTCAGATCCACACTTAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAGTGGTTAATCTTTAGCTGCCAGACCTTCAGATCCACACTTAAA  388

seq1  TGGCAAGAAGTTCTATCATCCTTTCTTATAGTCTATGAGCTACTGCTTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGAAGTTCTATCATCCTTTCTTATAGTCTATGAGCTACTGCTTCT  438

seq1  AGTCAGTATGGTAGAAACCTGAGTCAACACTAATGTGCCTCCTCCTCCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTATGGTAGAAACCTGAGTCAACACTAATGTGCCTCCTCCTCCTT  488

seq1  CCCTTTGAAAAGTAAACATTCTAAAGGGAAGGAAGTTATACAGCTATAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGAAAAGTAAACATTCTAAAGGGAAGGAAGTTATACAGCTATAAA  538

seq1  AATAATTTCTTGGATCTTTTAAGCCTTTGCAAAATATCACTTAGAATTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTCTTGGATCTTTTAAGCCTTTGCAAAATATCACTTAGAATTTT  588

seq1  TTTTAGGCTATGCGAAGAGCTAAAGTTTTTTTTTTCTTTTCTTTTCTTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGCTATGCGAAGAGCTAAAGTTTTTTTTTTCTTTTCTTTTCTTTC  638

seq1  TTTTGGAGGGTATGGCGAGTTGTGGGAACTCTGTATAGAACCTTGGCTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGGGTATGGCGAGTTGTGGGAACTCTGTATAGAACCTTGGCTGT  688

seq1  TAGGGAACTTGCTAAGTAGATCAGGCTGACCCTGAACCCACAGAAATCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAACTTGCTAAGTAGATCAGGCTGACCCTGAACCCACAGAAATCTG  738

seq1  CTTGCATCTACAGGGATTAAATGCTTACACCACCATGCCCTGAAGTTTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATCTACAGGGATTAAATGCTTACACCACCATGCCCTGAAGTTTCT  788

seq1  CATTTAACCCCTTTTTTGGGTGCGGACTTTTGTTCTCTGAGATCAATGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAACCCCTTTTTTGGGTGCGGACTTTTGTTCTCTGAGATCAATGGC  838

seq1  ATAACATTCCTGGAATATATATTTTAATGCCAGAAAACATAGGGTTGGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTCCTGGAATATATATTTTAATGCCAGAAAACATAGGGTTGGTT  888

seq1  TGTTGTTTGTTTAAGGAAACATCTGCAACACTAGGATAACCCATTAACAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTGTTTAAGGAAACATCTGCAACACTAGGATAACCCATTAACAC  938

seq1  GGGCACAAAAGTGGCAGCTGCAGAGCAGAATTTTAAAAAAGCCTTTTCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAAAAGTGGCAGCTGCAGAGCAGAATTTTAAAAAAGCCTTTTCTG  988

seq1  CAAAGGAGATACTGTCTCTAAGATTCTTTGGCTAGAGAAGTGCTCTCAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGATACTGTCTCTAAGATTCTTTGGCTAGAGAAGTGCTCTCAAA  1038

seq1  GATGTGATAGATCCAGTCCCTGCTTGCTTGTTTTGTCCTGGAAAGATAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGATAGATCCAGTCCCTGCTTGCTTGTTTTGTCCTGGAAAGATAGA  1088

seq1  TCTAACGGGGATAATGAATACCCGTCAGAGATCACAGAGGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACGGGGATAATGAATACCCGTCAGAGATCACAGAGGAATTC  1133