BAC Information

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BAC

Clone NameB6Ng01-081M15
Chromosome4 (Build37)
Map Location 146,867,704 - 146,994,241
singlet/doubletdoublet
Overlap geneOTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701
Downstream geneLOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081M15.bB6Ng01-081M15.g
ACCDH896532DH896533
length1,077613
definitionDH896532|Mus musculus domesticus DNA, BAC clone: B6Ng01-081M15, 5' end.DH896533|Mus musculus domesticus DNA, BAC clone: B6Ng01-081M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,993,153 - 146,994,241)(146,867,704 - 146,868,316)
sequence
gaattccaggatagccagggctatacagagaaaccttgtctccaaaacaa
caacaacaacaaaaacaaaaagcaagtgatagtaaattaactggaaggct
aaaaagtgcagacttatgcctattcagaaaaaggtgtgtattggaggaaa
tgtcagtttcaagttttaaagtagaagctgtattttttctggtgacttca
tggaggcagcatgtaaaaccatgggtgcactggtagacatacactgtcag
acagacagtttggtatttcagaacacagaataagcatgtagggagagcga
tccactccttacgtctagcagacaagagaggtcttttattagtttttatg
ttacagcagcatatccaagacctttttagacactaaggggtcttctgata
tctcagattattctttaggaatgtataaaaccaagtgatattttcttgta
ttttcagtagcttattaggtgtattatcagattggagtgttctctttaaa
tatttgtagttcttgagttgaagaaatatgttccttgtaatttgagaaaa
cataccttctctgtatcctcatttggcacattgaaaatattccaggtctt
atttgctctttgtatgcactactgcactgtgaaaaggtattgtggtggct
ttgcacatccttgtctttctttagaaaaaaggagtagaatgatgacagtt
gtctttatcttttgtagtgagaggtgtaggatgtttggctattatcttcc
ttagactgaggaatattcctgttgttctcaaaatatccagagctttcaca
gtgatcccctgtgatatttttccccaggctttttgtaactatatcgtcat
ggttatgaggcttctctcactgtacatacattgtgctgtgacttgtttgt
ttgtgcctattgaataagtcttgcatctctggcatgaaattaagtagagt
tcctttctgctccacagaaaaagagtttgtttatgtactttggggccttt
gctacttttcattgacatattacggtcatttgggggatgccaataaagcc
atttttttggggggggaggaggctaca
gaattccgagatatctggttgggtccagactgaaccaggccatcaggtgt
ggggaggggaactgaggatgtgctggaggatagaggggcaggtctagaga
taaccagcagccaagaaagcacctatccaactatgacttcattgatatgt
taacaggtacctcaggtagccattcttcctgaatttctttgaatttttcc
aaggttcagtctaccatgctgtgcggtgatgatttcaggagtagatattt
taataagtggaaaaatttcaatggatttttgtttgtttgtttgtttggtt
ttggtttttggttttttcgagacagggtttctctgtgtagccctggctgt
cctggaactcactttgtagaccaggctggcctcgaactcagaaatccgcc
tgcttctgcctcccaagtgctgggattaaaggagtgcaccactgcccggc
ttttactatggattaagacaaaatgagacagtatcttttgaataattttg
aacgcttacttactggattactgtctggattctggatcagaaaaattttc
ttccagtcttccctcctcctcttctgtgttgcttggaaaaagactcttta
tgtgtgttaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146993153_146994241
seq2: B6Ng01-081M15.b_46_1122 (reverse)

seq1  TGTAGACTCCTCCCCCCCAAAAAAATTGGCTTTATTTGGATCCCCCAAAA  50
      ||||| |||||||||||| |||||| |||||||||| | |||||||  ||
seq2  TGTAGCCTCCTCCCCCCCCAAAAAAATGGCTTTATTGGCATCCCCC--AA  48

seq1  ATGACCATAAAATATGTACAATGAAAAAAGTAACAAAGTGCACCAAAGTA  100
      |||||| |  ||||||| |||||  ||||||| ||||| || ||||||||
seq2  ATGACCGT--AATATGT-CAATG--AAAAGTAGCAAAG-GCCCCAAAGTA  92

seq1  CATTAAACAAACACCTTTTTCTGTGGATGCAGAAAGGAAACTCTACTTAA  150
      || |||||||||  ||||||||||||| ||||||||| ||||||||||||
seq2  CA-TAAACAAAC-TCTTTTTCTGTGGA-GCAGAAAGG-AACTCTACTTAA  138

seq1  TTTCATGCCAGAGATGCAAGACTATTTCAATAGGCACAAACAAAACAAGT  200
      |||||||||||||||||||||||  |||||||||||||||| ||||||||
seq2  TTTCATGCCAGAGATGCAAGACTTATTCAATAGGCACAAAC-AAACAAGT  187

seq1  CACAGCACAATGTATGTACAGTGAGAGAAGCCTCATAACCATGACGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACAATGTATGTACAGTGAGAGAAGCCTCATAACCATGACGATAT  237

seq1  AGTTACAAAAAGCCTGGGGAAAAATATCACAGGGGATCACTGTGAAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAAAAAGCCTGGGGAAAAATATCACAGGGGATCACTGTGAAAGCT  287

seq1  CTGGATATTTTGAGAACAACAGGAATATTCCTCAGTCTAAGGAAGATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATATTTTGAGAACAACAGGAATATTCCTCAGTCTAAGGAAGATAAT  337

seq1  AGCC-AACATCCTACACCTCTCACTACAAAAGATAAAGACAACTGTCATC  399
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAACATCCTACACCTCTCACTACAAAAGATAAAGACAACTGTCATC  387

seq1  ATTCTACTCCTTTTTTCTAAAGAAAGACAAGGATGTGCAAAGCCACCACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACTCCTTTTTTCTAAAGAAAGACAAGGATGTGCAAAGCCACCACA  437

seq1  ATACCTTTTCACAGTGCAGTAGTGCATACAAAGAGCAAATAAGACCTGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTTTCACAGTGCAGTAGTGCATACAAAGAGCAAATAAGACCTGGA  487

seq1  ATATTTTCAATGTGCCAAATGAGGATACAGAGAAGGTATGTTTTCTCAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCAATGTGCCAAATGAGGATACAGAGAAGGTATGTTTTCTCAAA  537

seq1  TTACAAGGAACATATTTCTTCAACTCAAGAACTACAAATATTTAAAGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGGAACATATTTCTTCAACTCAAGAACTACAAATATTTAAAGAGA  587

seq1  ACACTCCAATCTGATAATACACCTAATAAGCTACTGAAAATACAAGAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCAATCTGATAATACACCTAATAAGCTACTGAAAATACAAGAAAA  637

seq1  TATCACTTGGTTTTATACATTCCTAAAGAATAATCTGAGATATCAGAAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTTGGTTTTATACATTCCTAAAGAATAATCTGAGATATCAGAAGA  687

seq1  CCCCTTAGTGTCTAAAAAGGTCTTGGATATGCTGCTGTAACATAAAAACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTAGTGTCTAAAAAGGTCTTGGATATGCTGCTGTAACATAAAAACT  737

seq1  AATAAAAGACCTCTCTTGTCTGCTAGACGTAAGGAGTGGATCGCTCTCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGACCTCTCTTGTCTGCTAGACGTAAGGAGTGGATCGCTCTCCC  787

seq1  TACATGCTTATTCTGTGTTCTGAAATACCAAACTGTCTGTCTGACAGTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCTTATTCTGTGTTCTGAAATACCAAACTGTCTGTCTGACAGTGT  837

seq1  ATGTCTACCAGTGCACCCATGGTTTTACATGCTGCCTCCATGAAGTCACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTACCAGTGCACCCATGGTTTTACATGCTGCCTCCATGAAGTCACC  887

seq1  AGAAAAAATACAGCTTCTACTTTAAAACTTGAAACTGACATTTCCTCCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAATACAGCTTCTACTTTAAAACTTGAAACTGACATTTCCTCCAA  937

seq1  TACACACCTTTTTCTGAATAGGCATAAGTCTGCACTTTTTAGCCTTCCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACCTTTTTCTGAATAGGCATAAGTCTGCACTTTTTAGCCTTCCAG  987

seq1  TTAATTTACTATCACTTGCTTTTTGTTTTTGTTGTTGTTGTTGTTTTGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTACTATCACTTGCTTTTTGTTTTTGTTGTTGTTGTTGTTTTGGA  1037

seq1  GACAAGGTTTCTCTGTATAGCCCTGGCTATCCTGGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGTTTCTCTGTATAGCCCTGGCTATCCTGGAATTC  1077

seq1: chr4_146867704_146868316
seq2: B6Ng01-081M15.g_71_683

seq1  GAATTCCGAGATATCTGGTTGGGTCCAGACTGAACCAGGCCATCAGGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGAGATATCTGGTTGGGTCCAGACTGAACCAGGCCATCAGGTGT  50

seq1  GGGGAGGGGAACTGAGGATGTGCTGGAGGATAGAGGGGCAGGTCTAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGGAACTGAGGATGTGCTGGAGGATAGAGGGGCAGGTCTAGAGA  100

seq1  TAACCAGCAGCCAAGAAAGCACCTATCCAACTATGACTTCATTGATATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGCAGCCAAGAAAGCACCTATCCAACTATGACTTCATTGATATGT  150

seq1  TAACAGGTACCTCAGGTAGCCATTCTTCCTGAATTTCTTTGAATTTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGTACCTCAGGTAGCCATTCTTCCTGAATTTCTTTGAATTTTTCC  200

seq1  AAGGTTCAGTCTACCATGCTGTGCGGTGATGATTTCAGGAGTAGATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCAGTCTACCATGCTGTGCGGTGATGATTTCAGGAGTAGATATTT  250

seq1  TAATAAGTGGAAAAATTTCAATGGATTTTTGTTTGTTTGTTTGTTTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGTGGAAAAATTTCAATGGATTTTTGTTTGTTTGTTTGTTTGGTT  300

seq1  TTGGTTTTTGGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTGGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGT  350

seq1  CCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCC  400

seq1  TGCTTCTGCCTCCCAAGTGCTGGGATTAAAGGAGTGCACCACTGCCCGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGCCTCCCAAGTGCTGGGATTAAAGGAGTGCACCACTGCCCGGC  450

seq1  TTTTACTATGGATTAAGACAAAATGAGACAGTATCTTTTGAATAATTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTATGGATTAAGACAAAATGAGACAGTATCTTTTGAATAATTTTG  500

seq1  AACGCTTACTTACTGGATTACTGTCTGGATTCTGGATCAGAAAAATTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTTACTTACTGGATTACTGTCTGGATTCTGGATCAGAAAAATTTTC  550

seq1  TTCCAGTCTTCCCTCCTCCTCTTCTGTGTTGCTTGGAAAAAGACTCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTCTTCCCTCCTCCTCTTCTGTGTTGCTTGGAAAAAGACTCTTTA  600

seq1  TGTGTGTTAACTG  613
      |||||||||||||
seq2  TGTGTGTTAACTG  613