BAC Information

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BAC

Clone NameB6Ng01-081N24
Chromosome4 (Build37)
Map Location 44,208,116 - 44,208,916
singlet/doubletsinglet
Overlap genenone
Upstream geneUnc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38
Downstream geneMelk, Pax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081N24.bB6Ng01-081N24.g
ACCDH896597DH896598
length9911,100
definitionDH896597|Mus musculus domesticus DNA, BAC clone: B6Ng01-081N24, 5' end.DH896598|Mus musculus domesticus DNA, BAC clone: B6Ng01-081N24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatttatagacctggctggccttgaactcacagaaacctgttta
cctttgcctctggatgctgagattaaaggtgtgaagaatcaagtattaaa
acatgtaaacttttttaaaaaatcattaacagctagtcaatggtggctca
ctcctttaatccctgcacatggaaggcagagggaggtggatcctgagtct
gaggccagcctggtctacaaagcaagctagccagggctacagagaaacca
agtctcaagaaaacaaaacaaaggctggagagatgttatcattattgtaa
acaaagtgatttaaagcactgactgctcttccagaggtcctgagttcaat
acccagcaaccacatggtggctcacagccatctgtaatgggatccaatgc
cctcttctggtgtgtctgaaagtagcatatatgtattcacatacataaaa
taaataaatgaatcttttaaaaaattataacaaaatttctcaacattgaa
aaaagaggtgccaattcagttatgatgtgttttaggacaccaagaaacag
aaaagcactgtcccctcattacaattacaacactaaacacacagaacaaa
gacagcatctggacagcagcaagaaacacaggtaccttataaggcagacc
tggcaggttaacagcagataattcaactgaaacattaaaggtcatggggg
cccagactgatgtatttcaagttctgactggactgccgacccagaccatt
atctccagcaaagctgtctgttgtaactaaaagaaaaataaaaactttcc
atgataaaaataggctaaaggaatgcatggccactaagccagctccacag
aatatacttatagcaatcttttgactgaaaaacaaattccatccacaagc
ccacagaaagaacaaccacactaaaataacagtttaccagagaggggaaa
gaaacactacaaatcacaaatgcagaaatatgctcacttct
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaagttcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgttaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caagacacccatggaaggagttacagagccaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagatttttattgaa
aggacccagatgtagctggtctcttgtgagacttatgccggggccctagc
aaacaccagaagtggatgcttcacagtcagctatgatgatcataggctcc
catgagagctagagaagtagcaagagctaaagggatcttgcaccctatag
tgaacaacattatgacctacagtacccgagctctgactctagctgcatat
aatcaaagatgctagtcggccatcactgaaagagagccattgactgccta

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_44208116_44208916
seq2: B6Ng01-081N24.b_48_848

seq1  GAATTCCATTTATAGACCTGGCTGGCCTTGAACTCACAGAAACCTGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTATAGACCTGGCTGGCCTTGAACTCACAGAAACCTGTTTA  50

seq1  CCTTTGCCTCTGGATGCTGAGATTAAAGGTGTGAAGAATCAAGTATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCTCTGGATGCTGAGATTAAAGGTGTGAAGAATCAAGTATTAAA  100

seq1  ACATGTAAACTTTTTTAAAAAATCATTAACAGCTAGTCAATGGTGGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAAACTTTTTTAAAAAATCATTAACAGCTAGTCAATGGTGGCTCA  150

seq1  CTCCTTTAATCCCTGCACATGGAAGGCAGAGGGAGGTGGATCCTGAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTAATCCCTGCACATGGAAGGCAGAGGGAGGTGGATCCTGAGTCT  200

seq1  GAGGCCAGCCTGGTCTACAAAGCAAGCTAGCCAGGGCTACAGAGAAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCCTGGTCTACAAAGCAAGCTAGCCAGGGCTACAGAGAAACCA  250

seq1  AGTCTCAAGAAAACAAAACAAAGGCTGGAGAGATGTTATCATTATTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAAGAAAACAAAACAAAGGCTGGAGAGATGTTATCATTATTGTAA  300

seq1  ACAAAGTGATTTAAAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGATTTAAAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAT  350

seq1  ACCCAGCAACCACATGGTGGCTCACAGCCATCTGTAATGGGATCCAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCAACCACATGGTGGCTCACAGCCATCTGTAATGGGATCCAATGC  400

seq1  CCTCTTCTGGTGTGTCTGAAAGTAGCATATATGTATTCACATACATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGGTGTGTCTGAAAGTAGCATATATGTATTCACATACATAAAA  450

seq1  TAAATAAATGAATCTTTTAAAAAATTATAACAAAATTTCTCAACATTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATGAATCTTTTAAAAAATTATAACAAAATTTCTCAACATTGAA  500

seq1  AAAAGAGGTGCCAATTCAGTTATGATGTGTTTTAGGACACCAAGAAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGTGCCAATTCAGTTATGATGTGTTTTAGGACACCAAGAAACAG  550

seq1  AAAAGCACTGTCCCCTCATTACAATTACAACACTAAACACACAGAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACTGTCCCCTCATTACAATTACAACACTAAACACACAGAACAAA  600

seq1  GACAGCATCTGGACAGCAGCAAGAAACACAGGTACCTTATAAGGCAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCATCTGGACAGCAGCAAGAAACACAGGTACCTTATAAGGCAGACC  650

seq1  TGGCAGGTTAACAGCAGATAATTCAACTGAAACATTAAAGGTCATGGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGTTAACAGCAGATAATTCAACTGAAACATTAAAGGTCATGGGGG  700

seq1  CCCAGACTGATGTATTTCAAGTTCTGACTGGACTGCCGACCCAGACCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACTGATGTATTTCAAGTTCTGACTGGACTGCCGACCCAGACCATT  750

seq1  ATCTCCAGCAAAGCTGTCTGTTGTAACTAAAAGAAAAATAAAAACTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAGCAAAGCTGTCTGTTGTAACTAAAAGAAAAATAAAAACTTTCC  800

seq1  A  801
      |
seq2  A  801