BAC Information

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BAC

Clone NameB6Ng01-081O05
Chromosome4 (Build37)
Map Location 32,934,285 - 33,087,749
singlet/doubletdoublet
Overlap geneAnkrd6, LOC665298, Rragd
Upstream geneMap3k7, LOC665218, LOC665228, LOC665232, Bach2, Gja10, Casp8ap2, Mdn1, Lyrm2
Downstream gene4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt, LOC100041919, LOC100041924, Cnr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081O05.bB6Ng01-081O05.g
ACCDH896606DH896607
length718177
definitionDH896606|Mus musculus domesticus DNA, BAC clone: B6Ng01-081O05, 5' end.DH896607|Mus musculus domesticus DNA, BAC clone: B6Ng01-081O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,934,285 - 32,935,002)(33,087,573 - 33,087,749)
sequence
gaattcacagcacatactgcactaccatgactgaagcatctataaggtat
ttcgtgctatttgtcaagctccacggactgtgtaatccatgcacatagaa
gagaagttcccagagcacagtgtattctcctcttgaatgcttggtaatct
ctcaagcccaggccacatcccagagtctcttgaatcatacctggcccagc
ctttttttaaaggctgtccaaatgttcctacctgcagccaatcctgagaa
ccactgacccaaaggaaattctgaggacaatgaactccagtgcggacacg
gtcatcatactgattgtaactatgtcttgttttgttttgtttttgtttgt
ttgttttcgagacagggtttctctgtatagccctggctgtcctggaactc
actttgtagaccaggctggcctcgaactcagaaatccacctgcctctgcc
tcctgagtgctgggattaaaggcgtgcaccaccacgcccggctgattgta
actatgtcaactgagccttttcctcttatgtaagcactgtgcctggatga
cctcatttccctgaaggactcccggctacttcacacacaggacgtgaagg
cttgagaaggttagcaagcttgccaggctcacagagaaggtggtcctgat
tccttttctgcaagcttaatagaaattgggaaagactttcagacgggtaa
caaatttacagagacagg
cagtattgccaaggatacatagtgagatcttgtctcaaaaaacaaacata
tacatatacagataagtaggtaggtaggtagatggatggagagagagaga
gagagagagagagagagaagagaatgacacctgtaggaaggactctaaat
gactttagaacagttaccgaactatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_32934285_32935002
seq2: B6Ng01-081O05.b_48_765

seq1  GAATTCACAGCACATACTGCACTACCATGACTGAAGCATCTATAAGGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCACATACTGCACTACCATGACTGAAGCATCTATAAGGTAT  50

seq1  TTCGTGCTATTTGTCAAGCTCCACGGACTGTGTAATCCATGCACATAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGCTATTTGTCAAGCTCCACGGACTGTGTAATCCATGCACATAGAA  100

seq1  GAGAAGTTCCCAGAGCACAGTGTATTCTCCTCTTGAATGCTTGGTAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTTCCCAGAGCACAGTGTATTCTCCTCTTGAATGCTTGGTAATCT  150

seq1  CTCAAGCCCAGGCCACATCCCAGAGTCTCTTGAATCATACCTGGCCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCCCAGGCCACATCCCAGAGTCTCTTGAATCATACCTGGCCCAGC  200

seq1  CTTTTTTTAAAGGCTGTCCAAATGTTCCTACCTGCAGCCAATCCTGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTAAAGGCTGTCCAAATGTTCCTACCTGCAGCCAATCCTGAGAA  250

seq1  CCACTGACCCAAAGGAAATTCTGAGGACAATGAACTCCAGTGCGGACACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGACCCAAAGGAAATTCTGAGGACAATGAACTCCAGTGCGGACACG  300

seq1  GTCATCATACTGATTGTAACTATGTCTTGTTTTGTTTTGTTTTTGTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCATACTGATTGTAACTATGTCTTGTTTTGTTTTGTTTTTGTTTGT  350

seq1  TTGTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTC  400

seq1  ACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCC  450

seq1  TCCTGAGTGCTGGGATTAAAGGCGTGCACCACCACGCCCGGCTGATTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTGCTGGGATTAAAGGCGTGCACCACCACGCCCGGCTGATTGTA  500

seq1  ACTATGTCAACTGAGCCTTTTCCTCTTATGTAAGCACTGTGCCTGGATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTCAACTGAGCCTTTTCCTCTTATGTAAGCACTGTGCCTGGATGA  550

seq1  CCTCATTTCCCTGAAGGACTCCCGGCTACTTCACACACAGGACGTGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTCCCTGAAGGACTCCCGGCTACTTCACACACAGGACGTGAAGG  600

seq1  CTTGAGAAGGTTAGCAAGCTTGCCAGGCTCACAGAGAAGGTGGTCCTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAGGTTAGCAAGCTTGCCAGGCTCACAGAGAAGGTGGTCCTGAT  650

seq1  TCCTTTTCTGCAAGCTTAATAGAAATTGGGAAAGACTTTCAGACGGGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTGCAAGCTTAATAGAAATTGGGAAAGACTTTCAGACGGGTAA  700

seq1  CAAATTTACAGAGACAGG  718
      ||||||||||||||||||
seq2  CAAATTTACAGAGACAGG  718

seq1: chr4_33087573_33087749
seq2: B6Ng01-081O05.g_78_254 (reverse)

seq1  GGATAGTTGGGTAAATGTTATAAAGTCATTTAGAGTCCTTCCTACAGGTG  50
      |||||||| ||||| |||| ||||||||||||||||||||||||||||||
seq2  GGATAGTTCGGTAACTGTTCTAAAGTCATTTAGAGTCCTTCCTACAGGTG  50

seq1  TCATTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATCCATCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATCCATCTAC  100

seq1  CTACCTACCTACTTATCTGTATATGTATATGTTTGTTTTTTGAGACAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTACCTACTTATCTGTATATGTATATGTTTGTTTTTTGAGACAAGA  150

seq1  TCTCACTATGTATCCTTGGCTATACTG  177
      |||||||||||||||||||| ||||||
seq2  TCTCACTATGTATCCTTGGCAATACTG  177