BAC Information

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BAC

Clone NameB6Ng01-081P02
Chromosome4 (Build37)
Map Location 146,706,797 - 146,707,486
singlet/doubletsinglet
Overlap geneLOC666581
Upstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
Downstream geneEG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081P02.bB6Ng01-081P02.g
ACCDH896646DH896647
length1,199737
definitionDH896646|Mus musculus domesticus DNA, BAC clone: B6Ng01-081P02, 5' end.DH896647|Mus musculus domesticus DNA, BAC clone: B6Ng01-081P02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtttagctctgtatcacattttttaaattgggtgtagtctccc
ctcccccagcctgaaacctgcttgctcaggggttgagcttcctgctcatt
cgttctgccacgcccactgctggaccttgctgctttgctgttggtgccac
cacgtgctcaccctactactggacccgagattatttggcgggaatcgggt
cccctcccccttccttcataactagtgtcgcaacaataaaatttgagctt
tgatcagaatgaatttgtcttagctctgtttcttctttagccccgtctag
attcctctcttacagctcgagtagccttctcagtcgaaccattcatgttg
cgagctgctggcggccgcaacaattgggttatttggtttgttggtggctg
acttctcgagtactttatatattttggatagtagcccactgtcatatgta
gggttggtaaaggtcttttcccattctgttatctgttgttttgtcttatt
tacaatatatttgccttacagaagcctttcagcttcaaaggttcccactt
atagtttgtcttacaacctgagccattggtgttctgttcagaaacttgtc
tcctatacccatgagttcaagattattccccacattcttttctgatagac
ttagtgtatccagctttatattaaggtctttgatccccttggatttgatt
ttgtgcatggtagcagatatgtatctatttacattcttctacatgctgac
attcaattaagtcagcaccatttttttgaagatactttctttttccattg
tttgggtttgacatttttgtcaaaagcaagtcccttttcggccttcattt
tacacacccatcagaatggctaacataaaaaaagttagaatatgctgctg
aggatgtggagcaaggggaccactctttcatttgctggtggccagtggaa
aacttattcaagcacttgaaaaatcaattggtgtatgtgtgttttcagaa
aaacaggagtgttacctaaagatccagctataccactattaagcatatac
ccaaatgatgcttccataatcccacaaacaccttgctaccctatgtgcat
agagcttttatcatataggcagaaactggaaagaatttcctcttcttgaa
agtgataggagatgtgtacctcctacccaagtgaatctattcagctcct
gaattcatacaggagagaaaccttacaaatgcagtgaatgtggcaaatgc
tttactgtaaaaagcagtctgagaattcatcagagaattcatacaggaga
gaaaccttacaaatgcagtaaatgtgacaaatgctttaccaaacaatcca
atcttagtattcatcagagaattcatacaggagagaaaccttacaaatgc
agtgaatgtgaaaaatgctttaatgaaaaaaacattctgaaaattcatca
gagaattcatacaggagagagaccttacaaatgcagtgaatgtgaaaaat
gcttttcccgaaaattccatcttggtattcatcagagaattcatacagga
aagaaaccttacaaatagattgtatgtgacaaatacaatactcacaatgt
cagtcttagaaatcatcagttatttcatacagtagagaatctttataaat
gaagtaaatgaggcaattctttaccaagatatattatctcaaaattcatt
agagaatacttagagaagacaaacttttcaaatatatttgtaggtatgaa
tcctttccttttggcctatttcctagactgtacagtgaatacttacaggc
tagaaacttaactcatgcattgtatgaagaaatatcttttgacttcattt
cagtcagagagaacatctaataactttttttgggtaaaagtattttctgt
tggggaaaatggggtattcttgaacaacactggaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146706797_146707486
seq2: B6Ng01-081P02.g_104_797

seq1  CAAATGCTTTACTGTAAAAAGCAGTCTGAGAATTCATCAGAGAATTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTTTACTGTAAAAAGCAGTCTGAGAATTCATCAGAGAATTCATA  50

seq1  CAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACCAAA  100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGGAGAGAAACCTTACAAATGCAGTAAATGTGACAAATGCTTTACCAAA  100

seq1  CAATCCAATCTTAGTATTCATCAGAGAATTCATACAGGAGAGAAACCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAATCTTAGTATTCATCAGAGAATTCATACAGGAGAGAAACCTTA  150

seq1  CAAATGCAGTGAATGTGAAAAATGCTTTTCCCGAAAATTACA-TCTTGGT  199
      ||||||||||||||||||||||||| |||   |||||  ||| |||    
seq2  CAAATGCAGTGAATGTGAAAAATGC-TTTAATGAAAAAAACATTCTGAAA  199

seq1  ATTCATCAGAGAATTCATACAGGAGAGAGACCTTACAAATGCAGTGAATG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCAGAGAATTCATACAGGAGAGAGACCTTACAAATGCAGTGAATG  249

seq1  TGAAAAATGCTTTTCCCGAAAATTCCATCTTGGTATTCATCAGAGAATTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATGCTTTTCCCGAAAATTCCATCTTGGTATTCATCAGAGAATTC  299

seq1  ATACAGGAAAGAAACCTTACAAATAGATTGTATGTGACAAATACAATACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGAAAGAAACCTTACAAATAGATTGTATGTGACAAATACAATACT  349

seq1  CACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTAGAGAATCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTAGAGAATCT  399

seq1  TTATAAATGAAGTAAATGAGGCAATTCTTTACCAAGATATATTATCTCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATGAAGTAAATGAGGCAATTCTTTACCAAGATATATTATCTCAA  449

seq1  AATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATA-TTGTA  498
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTTGTA  499

seq1  GGTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACAGTGAATA  548
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGT-ACAGTGAATA  548

seq1  CTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATATC-TTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATATCTTTTG  598

seq1  ACTTCATTTCAGGTCAGAGAGAACATCTAAGAAC-TTTTTAGGGT-AAAG  645
      ||||||||||| |||||||||||||||||| ||| ||||| |||| ||||
seq2  ACTTCATTTCA-GTCAGAGAGAACATCTAATAACTTTTTTTGGGTAAAAG  647

seq1  TA-TTTCTGTTGGGGAAAATGGTGTATTCTTG-ACAACACTTGAGGC  690
      || ||||||||||||||||||| ||||||||| |||||||| |||||
seq2  TATTTTCTGTTGGGGAAAATGGGGTATTCTTGAACAACACTGGAGGC  694