BAC Information

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BAC

Clone NameB6Ng01-081P03
Chromosome4 (Build37)
Map Location 11,794,506 - 11,933,485
singlet/doubletdoublet
Overlap genePpm2c
Upstream gene2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17
Downstream geneTmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592, OTTMUSG00000004461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081P03.bB6Ng01-081P03.g
ACCDH896648DH896649
length1,048960
definitionDH896648|Mus musculus domesticus DNA, BAC clone: B6Ng01-081P03, 5' end.DH896649|Mus musculus domesticus DNA, BAC clone: B6Ng01-081P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,932,431 - 11,933,485)(11,794,506 - 11,795,466)
sequence
gaattcatggcaggcaagaaccaatgtcaggaatgtcgtcctttgaccta
cactcacaatctgtggcaaacacacccaacccctaacccctgccctgaca
cacacacacacatcatacacccacacgataaaagtattatttaaacccag
tgaactccaagtaattataatcacaggagtgccgtggttggcatcgggat
gacctctcaggcagatgtaaaggatggacagttccatgtacagtgttgtg
ggaagagatggctctgagtgagcctcctcctcgcttgctgccctttggaa
atagtaaatcggccggatgttccacaccctccactaggctctacctcttc
tccttcctctttcccaagcacctcatctaatatgctacattcttttgttt
caaaaaaggatttatttattatgtaatgtttattatataataatatataa
tatatagatttagtatatagatttattaatttattattatgaatatgtgt
acacacacacacacacacacacacattctaatctagctctctctttctac
aaagtggctaatagtcaacaatgggaattctaccacgctgcttttttcta
agcctagagtcttcccacaggcctgattcctaaacatcacagttagatac
agctatccttttttactaactacctacaatggagattacattcaactgag
tttcagatagcactcgctccattcaaagcaaagtcatttggggctcttcc
ctgattgccagccagggagcttccatcttcaggctgcttttcctcttatg
cacctctacactgcccagaacaagacaaaagtgcatacctcagtcatcaa
gagacatccaactggggtttgtatttgtgtggcctgtggcatccgcctgc
acaatgtaatcacaaacggtgtgttctctccaccagtggttactcaatat
cggccagagagtgtattagcttacacactgcaagcaagagaacatgccac
cacattggattctgcactgaggtgtggttcccatctacttctccctta
gaattcttgggtacacattttggtggaatccacaaatgtatgttctctag
ttttcaaaagttgattccccccttcccaaactgaggattcaacctagggc
cttgagctagcatgctctaccaccaagtgacagcctcagcctcattcctc
atcttcaaacagcacttagatatgctacccaggctgggcttgaaccttag
atcctcgtgcctatttatgtcgagactaccgaggatctccatcctgctag
ccagaaaactgccctcctccctcactaggaaactcacgagcagactctgc
tgagctcatgaactgagcagacaggtcacgaagaggagcttgacttttag
taactgtggtttcataaaaagtaaatttgtctttttcccctagttcttgt
cacaggagtcttcagacctttccaatctctctagcagtattagtaaagcc
ttttgttaaaatatacatgagagaaatttttgataagctgcatgttataa
aatgtatgtgaaagatcccatcaagggactgaaaattcaaacaactgtga
gaaaaattatctaattagaagtcctatctaatttttaaaaaagattgtga
tccaaaatatgcaaagaactctcaaagtaaaacaataaagtaaataaaca
acccagttaaaacagcagacaagtacttcaccataggagacacagatgac
aaacaaacccaggaaaggtgcccaactttgtgccatagggaaacacaagg
caagagtcgcagctgcatccctgttagaaaggctcaaaagaccaaatagc
actggtttggagttgtaggaactctcgtttcactattgatgagactgcaa
aaccatatggctactttagaaaacagacaaattcttcccaaaccaaacat
actactaggctaatacgcacaacccagtcctaatatcccaccaataaatg
gaaactcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_11932431_11933485
seq2: B6Ng01-081P03.b_45_1092 (reverse)

seq1  TAAGGGAGGAAGTAGAATGGGGAACCACACCTCAGTGCATGAATCCAATG  50
      ||||||| ||||||||   |||||||||||||||||||| ||||||||||
seq2  TAAGGGA-GAAGTAGA--TGGGAACCACACCTCAGTGCA-GAATCCAATG  46

seq1  CTGGTTGGCATGTTCTCTTGCTTTGCAGTGTGTAAGCTAATAACACTTCT  100
       ||| |||||||||||||||| ||||||||||||||||||| |||| |||
seq2  -TGG-TGGCATGTTCTCTTGC-TTGCAGTGTGTAAGCTAAT-ACAC-TCT  91

seq1  CTGGCCGATATTGAGTAACCACTGGTGGAGAGAACACACCGTTTGTGA-T  149
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGGCCGATATTGAGTAACCACTGGTGGAGAGAACACACCGTTTGTGATT  141

seq1  ACATTGTGGCAGGCGGATGCCACAGGCCACACAAATACAAACCCCAG-TG  198
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  ACATTGT-GCAGGCGGATGCCACAGGCCACACAAATACAAACCCCAGTTG  190

seq1  GATGTGCTCTTGATGACTGAGGTATGCACTTTTGTCTTGTTCTGGGCAGT  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGT-CTCTTGATGACTGAGGTATGCACTTTTGTCTTGTTCTGGGCAGT  239

seq1  GTAGAGGTGCATAAGAGGAAAAGCAGCCTGAAGATGGAAGCT-CCTGGCT  297
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTAGAGGTGCATAAGAGGAAAAGCAGCCTGAAGATGGAAGCTCCCTGGCT  289

seq1  GGCAATCAGGGAAGAGCCCC-AATGACTTTGCTTTGAATGGAGCGAGTGC  346
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGCAATCAGGGAAGAGCCCCAAATGACTTTGCTTTGAATGGAGCGAGTGC  339

seq1  TATCTGAAACTCAGTTGAATGTAATCTCCATTGTAGGTAGTTAGTAAAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAAACTCAGTTGAATGTAATCTCCATTGTAGGTAGTTAGTAAAAA  389

seq1  AGGATAGCTGTATCTAACTGTGATGTTTAGGAATCAGGCCTGTGGGAAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGCTGTATCTAACTGTGATGTTTAGGAATCAGGCCTGTGGGAAGA  439

seq1  CTCTAGGCTTAGAAAAAAGCAGCGTGGTAGAATTCCCATTGTTGACTATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGCTTAGAAAAAAGCAGCGTGGTAGAATTCCCATTGTTGACTATT  489

seq1  AGCCACTTTGTAGAAAGAGAGAGCTAGATTAGAATGTGTGTGTGTGTGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTTTGTAGAAAGAGAGAGCTAGATTAGAATGTGTGTGTGTGTGTG  539

seq1  TGTGTGTGTACACATATTCATAATAATAAATTAATAAATCTATATACTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTACACATATTCATAATAATAAATTAATAAATCTATATACTAA  589

seq1  ATCTATATATTATATATTATTATATAATAAACATTACATAATAAATAAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATATTATATATTATTATATAATAAACATTACATAATAAATAAAT  639

seq1  CCTTTTTTGAAACAAAAGAATGTAGCATATTAGATGAGGTGCTTGGGAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTGAAACAAAAGAATGTAGCATATTAGATGAGGTGCTTGGGAAA  689

seq1  GAGGAAGGAGAAGAGGTAGAGCCTAGTGGAGGGTGTGGAACATCCGGCCG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGAGAAGAGGTAGAGCCTAGTGGAGGGTGTGGAACATCCGGCCG  739

seq1  ATTTACTATTTCCAAAGGGCAGCAAGCGAGGAGGAGGCTCACTCAGAGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTATTTCCAAAGGGCAGCAAGCGAGGAGGAGGCTCACTCAGAGCC  789

seq1  ATCTCTTCCCACAACACTGTACATGGAACTGTCCATCCTTTACATCTGCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTCCCACAACACTGTACATGGAACTGTCCATCCTTTACATCTGCC  839

seq1  TGAGAGGTCATCCCGATGCCAACCACGGCACTCCTGTGATTATAATTACT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGTCATCCCGATGCCAACCACGGCACTCCTGTGATTATAATTACT  889

seq1  TGGAGTTCACTGGGTTTAAATAATACTTTTATCGTGTGGGTGTATGATGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTCACTGGGTTTAAATAATACTTTTATCGTGTGGGTGTATGATGT  939

seq1  GTGTGTGTGTGTCAGGGCAGGGGTTAGGGGTTGGGTGTGTTTGCCACAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTCAGGGCAGGGGTTAGGGGTTGGGTGTGTTTGCCACAGA  989

seq1  TTGTGAGTGTAGGTCAAAGGACGACATTCCTGACATTGGTTCTTGCCTGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTGTAGGTCAAAGGACGACATTCCTGACATTGGTTCTTGCCTGC  1039

seq1  CATGAATTC  1055
      |||||||||
seq2  CATGAATTC  1048

seq1: chr4_11794506_11795466
seq2: B6Ng01-081P03.g_70_1029

seq1  GAATTCTTGGGTACACATTTTGGTGGAATCCACAAATGTATGTTCTCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGTACACATTTTGGTGGAATCCACAAATGTATGTTCTCTAG  50

seq1  TTTTCAAAAGTTGATTCCCCCCTTCCCAAACTGAGGATTCAACCTAGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAAGTTGATTCCCCCCTTCCCAAACTGAGGATTCAACCTAGGGC  100

seq1  CTTGAGCTAGCATGCTCTACCACCAAGTGACAGCCTCAGCCTCATTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCTAGCATGCTCTACCACCAAGTGACAGCCTCAGCCTCATTCCTC  150

seq1  ATCTTCAAACAGCACTTAGATATGCTACCCAGGCTGGGCTTGAACCTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAAACAGCACTTAGATATGCTACCCAGGCTGGGCTTGAACCTTAG  200

seq1  ATCCTCGTGCCTATTTATGTCGAGACTACCGAGGATCTCCATCCTGCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCGTGCCTATTTATGTCGAGACTACCGAGGATCTCCATCCTGCTAG  250

seq1  CCAGAAAACTGCCCTCCTCCCTCACTAGGAAACTCACGAGCAGACTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAACTGCCCTCCTCCCTCACTAGGAAACTCACGAGCAGACTCTGC  300

seq1  TGAGCTCATGAACTGAGCAGACAGGTCACGAAGAGGAGCTTGACTTTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCATGAACTGAGCAGACAGGTCACGAAGAGGAGCTTGACTTTTAG  350

seq1  TAACTGTGGTTTCATAAAAAGTAAATTTGTCTTTTTCCCCTAGTTCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTGGTTTCATAAAAAGTAAATTTGTCTTTTTCCCCTAGTTCTTGT  400

seq1  CACAGGAGTCTTCAGACCTTTCCAATCTCTCTAGCAGTATTAGTAAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGTCTTCAGACCTTTCCAATCTCTCTAGCAGTATTAGTAAAGCC  450

seq1  TTTTGTTAAAATATACATGAGAGAAATTTTTGATAAGCTGCATGTTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTAAAATATACATGAGAGAAATTTTTGATAAGCTGCATGTTATAA  500

seq1  AATGTATGTGAAAGATCCCATCAAGGGACTGAAAATTCAAACAACTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATGTGAAAGATCCCATCAAGGGACTGAAAATTCAAACAACTGTGA  550

seq1  GAAAAATTATCTAATTAGAAGTCCTATCTAATTTTTAAAAAAGATTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTATCTAATTAGAAGTCCTATCTAATTTTTAAAAAAGATTGTGA  600

seq1  TCCAAAATATGCAAAGAACTCTCAAAGT-AAACAAT-AAGTAAATAAACA  648
      |||||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  TCCAAAATATGCAAAGAACTCTCAAAGTAAAACAATAAAGTAAATAAACA  650

seq1  ACCCAGTTAAAACAGCAGACAAGTACTTCACCATAGGAGACACAGATGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTTAAAACAGCAGACAAGTACTTCACCATAGGAGACACAGATGAC  700

seq1  AAACAAACCCAGGAAAGGTGCCCAACTTTGTGCCATAGGGAAACACAAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACCCAGGAAAGGTGCCCAACTTTGTGCCATAGGGAAACACAAGG  750

seq1  CAAGAGTCGCAGCTGCATCCCTGTTAGAAAGGCTCAAAAGACCAAATAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTCGCAGCTGCATCCCTGTTAGAAAGGCTCAAAAGACCAAATAGC  800

seq1  ACTGGTTTGGAGTTGTAGGAACTCTCG-TTCACTATTGATGAGACTGCAA  847
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACTGGTTTGGAGTTGTAGGAACTCTCGTTTCACTATTGATGAGACTGCAA  850

seq1  AACCATATGGCTACTTTAGAAAACAGACAAATTCTTCCCAAACCAAACAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATATGGCTACTTTAGAAAACAGACAAATTCTTCCCAAACCAAACAT  900

seq1  ACTACTATGCATAATACGCACAATCACAGTTCTTAGTATCCCACCAAATA  947
      ||||||| || |||||||||||| | ||| || || ||||||||| ||||
seq2  ACTACTAGGC-TAATACGCACAA-CCCAG-TCCTAATATCCCACC-AATA  946

seq1  AATGGAAACTCAGT  961
      ||||||||||||||
seq2  AATGGAAACTCAGT  960