BAC Information

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BAC

Clone NameB6Ng01-081P18
Chromosome4 (Build37)
Map Location 142,789,349 - 142,921,434
singlet/doubletdoublet
Overlap genePrdm2, EG626575, LOC433776, Pdpn
Upstream geneEG665983, LOC546484, 6330411D24Rik, LOC666018
Downstream geneLrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081P18.bB6Ng01-081P18.g
ACCDH896676DH896677
length532873
definitionDH896676|Mus musculus domesticus DNA, BAC clone: B6Ng01-081P18, 5' end.DH896677|Mus musculus domesticus DNA, BAC clone: B6Ng01-081P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,789,349 - 142,789,886)(142,920,483 - 142,921,434)
sequence
actctgtagaccaggctgacctcaaactcagaaatctgcctgcctctgcc
tctcaagtactgggattaaagacgtacgccaccactacctggctcacttt
tttaaaaaaatatttctttttaaatgagtacactatagctgtcttcagac
acaccagaacagggtattggatcccattacagatggttgtgagccaccat
gtggttgctgggaattgaactcaggacctctggaaaagctgtcagtgttc
ttacttaacccctgagccatctctccagccccacactttcttttaaaagt
tcactacatagtcatgtttactggaccctcttctctgttacttctaatcc
taaccattagaaaactcatctttgtaggtaagggcacttgctgccaagcc
tgatagcctgagttcaatccccagaacacaagtgaatagaaagaaccaat
tctctcagttgttttgacctacacagacacacagacacagatacacacat
agacacacacagggggagggggagggggtact
gaattctgccggcaagtggtggcgcactcccagcacttgggaggtagagg
caggaggatttctaagttcaaggctagcctggtctacagagtgagttccg
ggatagccagggctacacagagaaaccctgtctcaaaaaagaaagaaaga
aagaaggaaagaaggaaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaaggaaggaaggaaggaaggaaggaaggaaggaagg
aagaaaggaaggaaggaaggaaggaaggaaggaaaaggaaaaggaaaagg
aaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaa
aaggaaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaaagaaagaa
atatttgaattctgtctcagaatcatccttaagttgttggtggtggtgtt
tctctacaagaaggaagaggaggaggaggaggtctcaacgcatcagcaaa
acacaaacataaatatcatctgtgcagttagctccactgatgatgatgct
cgtctggagatgcaccggcagtacggagagccaagcaacctcccagcagc
atccacgggcacctcctggaccgcgccattcctctctctgctccaagaca
tgtctctcagcactccactggagagaatgcaatgcttcctccagttcagg
cttggagatcaactgctgacgtcagagacaattgctcagctggtcagtct
agattcacagcttccgtgcagagtctagcctgtatgtacagatgagcata
ctgacatgagagagctgtctgctgatactacagtgctggctccgtagcag
ctgcgcagctcagacactgagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_142789349_142789886
seq2: B6Ng01-081P18.b_47_584

seq1  GAATTCACTCTGTAGACCAGGCTGACCTCAAACTCAGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGACCTCAAACTCAGAAATCTGCCTGCC  50

seq1  TCTGCCTCTCAAGTACTGGGATTAAAGACGTACGCCACCACTACCTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTCAAGTACTGGGATTAAAGACGTACGCCACCACTACCTGGCT  100

seq1  CACTTTTTTAAAAAAATATTTCTTTTTAAATGAGTACACTATAGCTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTTTAAAAAAATATTTCTTTTTAAATGAGTACACTATAGCTGTCT  150

seq1  TCAGACACACCAGAACAGGGTATTGGATCCCATTACAGATGGTTGTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACACCAGAACAGGGTATTGGATCCCATTACAGATGGTTGTGAGC  200

seq1  CACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAAAGCTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAAAGCTGTCA  250

seq1  GTGTTCTTACTTAACCCCTGAGCCATCTCTCCAGCCCCACACTTTCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTACTTAACCCCTGAGCCATCTCTCCAGCCCCACACTTTCTTTT  300

seq1  AAAAGTTCACTACATAGTCATGTTTACTGGACCCTCTTCTCTGTTACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCACTACATAGTCATGTTTACTGGACCCTCTTCTCTGTTACTTC  350

seq1  TAATCCTAACCATTAGAAAACTCATCTTTGTAGGTAAGGGCACTTGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTAACCATTAGAAAACTCATCTTTGTAGGTAAGGGCACTTGCTGC  400

seq1  CAAGCCTGATAGCCTGAGTTCAATCCCCAGAACACAAGTGAATAGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGATAGCCTGAGTTCAATCCCCAGAACACAAGTGAATAGAAAGA  450

seq1  ACCAATTCTCTCAGTTGTTTTGACCTACACAGACACACAGACACAGATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTCTCTCAGTTGTTTTGACCTACACAGACACACAGACACAGATAC  500

seq1  ACACATAGACACACACAGGGGGAGGGGGAGGGGGTACT  538
      ||||||||||||||||||||||||||||||||||||||
seq2  ACACATAGACACACACAGGGGGAGGGGGAGGGGGTACT  538

seq1: chr4_142920483_142921434
seq2: B6Ng01-081P18.g_68_940 (reverse)

seq1  CTCTCAGTGTCTGGAGCTGCAGACAAGCCGGGCTTTTCCCTGTAGCCCAG  50
      |||||||||||| |||||||  |        |||  | |  | || ||||
seq2  CTCTCAGTGTCT-GAGCTGCGCA--------GCTGCTAC--GGAG-CCAG  38

seq1  CACTGGTTAGTAATCCAGGCAGGACAGCTCTCTCATGTCAGTATTGCTCC  100
      |||||  |||| |||   ||| ||||||||||||||||||||| |||| |
seq2  CACTG--TAGT-ATC--AGCA-GACAGCTCTCTCATGTCAGTA-TGCT-C  80

seq1  ATCTGTGTCCCATTACAGGGCTTAGACCTTCCTGGCACGGAAGGCTGTGA  150
      ||||||    || ||||||   |||||  |    |||||||| |||||||
seq2  ATCTGT---ACA-TACAGG--CTAGACTCT----GCACGGAA-GCTGTGA  119

seq1  AATTCTAGACCTGAACCAGCCTGAGCAATTTGTCTCTGACGTCAGCAGTT  200
      |  |||||| ||| ||||| |||||||| |||||||||||||||||||||
seq2  A--TCTAGA-CTG-ACCAG-CTGAGCAA-TTGTCTCTGACGTCAGCAGTT  163

seq1  GATCCTCCAAAGCCCTGAAACTGGGGAGGAAGCATTTGCATTTTCTCTCC  250
      ||| ||||||   |||| ||||  |||||||||| ||||||| |||   |
seq2  GAT-CTCCAA--GCCTG-AACT--GGAGGAAGCA-TTGCATTCTCT---C  203

seq1  CAGTTGGAGGTGCTGAGAGACATGGTCTTGGGAGCAGAGAGAGGGAATGG  300
      ||| |||| |||||||||||||| ||||| |||||||||||| ||||| |
seq2  CAG-TGGA-GTGCTGAGAGACAT-GTCTT-GGAGCAGAGAGA-GGAAT-G  247

seq1  GCGCGGTCCAGGGAGGGTGCCCGTGGATGCTGCTGGGGAGGTTGCTTGGC  350
      ||||||||||||   ||||||||||||||||||| |||||||||||||||
seq2  GCGCGGTCCAGG--AGGTGCCCGTGGATGCTGCT-GGGAGGTTGCTTGGC  294

seq1  TCTCCGTACTTGCCGGTGCATCTCCAGACGAGCATCATCATCAGTGGAGC  400
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGTAC-TGCCGGTGCATCTCCAGACGAGCATCATCATCAGTGGAGC  343

seq1  TAACTGCACAGATGATATTTATGTTTGTGTTTTGCTGATGCGTTGAGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCACAGATGATATTTATGTTTGTGTTTTGCTGATGCGTTGAGACC  393

seq1  TCCTCCTCCTCCTCTTCCTTCTTGTAGAGAAACACCACCACCAACAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTCCTCTTCCTTCTTGTAGAGAAACACCACCACCAACAACTT  443

seq1  AAGGATGATTCTGAGACAGAATTCAAATATTTCTTTCTTTCCTTTTCCTT  550
      |||||||||||||||||||||||||||||||||||||             
seq2  AAGGATGATTCTGAGACAGAATTCAAATATTTCTTTC-------------  480

seq1  TTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTT  600
           |||||||||||||||||||||||||||||||||||||||||||||
seq2  -----TTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTT  525

seq1  CCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCC  575

seq1  TTTTCCTTTTCCTTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTTCCTTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTCC  625

seq1  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTT  750
      |||||||||||||||||||||||||||||||    |||||||||||||||
seq2  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC----CTTTCTTTCTTTCTT  671

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCCTTC  721

seq1  TTTCTTTCTTTCTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTAT  771

seq1  CCCGGAACTCACTCTGTAGACCAGGCTAGCCTTGAACTTAGAAATCCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGAACTCACTCTGTAGACCAGGCTAGCCTTGAACTTAGAAATCCTCC  821

seq1  TGCCTCTACCTCCCAAGTGCTGGGAGTGCGCCACCACTTGCCGGCAGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTACCTCCCAAGTGCTGGGAGTGCGCCACCACTTGCCGGCAGAAT  871

seq1  TC  952
      ||
seq2  TC  873