BAC Information

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BAC

Clone NameB6Ng01-081P24
Chromosome4 (Build37)4 (Build37)
Map Location 146,766,188 - 146,766,991145,039,050 - 145,039,750
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588
Downstream geneLOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081P24.bB6Ng01-081P24.g
ACCDH896688DH896689
length813873
definitionDH896688|Mus musculus domesticus DNA, BAC clone: B6Ng01-081P24, 5' end.DH896689|Mus musculus domesticus DNA, BAC clone: B6Ng01-081P24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,766,188 - 146,766,991)(145,039,050 - 145,039,750)
sequence
gaattcatacagtagagaaaatttacaaaaattcagtgaatgtgataaat
gctttactaataaaggcagactgagaattaatcagataatttatacattt
aaaaaaaaaaccttacaagtattttgtatgtgataaatgcagtacccaca
acatcagtctgacaaatcaacaaatatttcaaacagtagagcaacattat
aaatgaaatgaatgagataatcctttaacaagaaatatcatcttaaaatt
cactggagaattcttccaaaagggaaacttttcaaatacattgatggttt
gaatcctttattttggcctatctcttagaatgtaacagataatttataca
ggcaagaatcttaacaaatataatatatgctgaaatatctttgacttcat
ttcagtgcagaaaaaatatgtaaaatattttttatgggaaaaatagttct
cctggggaaatgtggcatatgttttacacaggtaatattcttttcaacag
ttagtgctctaaactagagaattatgaatctgaaaacttttgaaaacctt
catgcaatgttcaaatctttagataatgtcaactattatgctggcagtaa
ctctgaatatatgataatgaaaaaaacatttttcattaaaacttttactt
tgttcacccctcaaatatttattttgatgaagtcaggtgtggaaagccag
aagaaatatggatgtttgtgcaacaatttcatggagatagaaattgatcc
attccaaaagaaaacgaagtgtactatcggccttcaaaatgtctaataaa
actgggcagcatt
gaattctctgatgaattctcagattgccttttccagtaaagcatttgtca
cattcgctacatttgtaaggtttctctcctgtatgaattctctgatgaat
tctgagactgcctttttcggtaaagcatttgtcgcattcactgcatttgt
aagatttctctcctgcatgaattttctgatgaaaattaagatgggatttt
tgggaaaagcatttgtcccattcagtacatttgtgaggtgtataatggga
ggattctagaatcacattgctaagcttgttccatttagaagacttctctt
gaatattcatgtgttcaagaacaatgtactggctgtcttgatccatgacc
ttctcatactttccatgtatgcaatgattttctgaaaaaaatataagggc
aattagaggtgaaatgaattacttatataaggagtaagggactcaataat
cagtgatctcatggatttgtactctcaagagaggttttcctctctctctc
tctctctcttttttgaatcattacatgtatcctaagaagaaccccaaata
tgatttatatcaaatgtctggaaatgataatagcctgctaaatgttattt
tcaaatttgacagcatacgcacctcaaatataatgacccagaattgctcc
tgtcttaaggaaaaagaaggacaaagaatggaaaagaggctgaagggaag
gccatctggatattccagagcatttacataaacacatagtaggaaaactc
agagaaggaaaaggaattcttcaagaagttcattcttacccaccaaacaa
cagattgtggaattcttcaacatcacatccatgtacaatgaccttctgag
caaactgagacatttcccattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146766188_146766991
seq2: B6Ng01-081P24.b_33_845

seq1  GAATTCATACAGTAGAGAAAATTTACAAAAATGCAGTGAATGTGATAAAT  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATTCATACAGTAGAGAAAATTTACAAAAATTCAGTGAATGTGATAAAT  50

seq1  GCTTTACTAATAAAGGCAGACTGAGAATTAATCAGATAATTTATACATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACTAATAAAGGCAGACTGAGAATTAATCAGATAATTTATACATTT  100

seq1  -AAAAAAAAACCTTACAAGTATTTTGTATGTGATAAATGCAGTACCCACA  149
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACCTTACAAGTATTTTGTATGTGATAAATGCAGTACCCACA  150

seq1  ACATCAGTCTGACAAATCAACAAATATTTCAAACAGTAGAGCAACATTAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGTCTGACAAATCAACAAATATTTCAAACAGTAGAGCAACATTAT  200

seq1  AAATGAAATGAATGAGATAATCCTTTAACAAGAAATATCATCTTAAAATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATGAATGAGATAATCCTTTAACAAGAAATATCATCTTAAAATT  250

seq1  CACTGGAGAATTCTTCCAAAAGGGAAACTTTTCAAATACATTGATGGTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAGAATTCTTCCAAAAGGGAAACTTTTCAAATACATTGATGGTTT  300

seq1  GAATCCTTTATTTTGGCCTATCTCTTAGAATGTAACAGATAATTTATACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTTTATTTTGGCCTATCTCTTAGAATGTAACAGATAATTTATACA  350

seq1  GGCAAGAATCTTAACAAATATAATATATGCTGAAATATCTTTGACTTCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGAATCTTAACAAATATAATATATGCTGAAATATCTTTGACTTCAT  400

seq1  TTCAGTGCAGAAAAAATATGTAAAATATTTTTTTATGGGAAAAAAAGTTC  449
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  TTCAGTGCAGAAAAAATATGTAAAATA-TTTTTTATGGGAAAAATAGTTC  449

seq1  TCCTGGGGAAATGTGGCATATGTTTTACACGGGTAATATTCTTTTCAACA  499
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCCTGGGGAAATGTGGCATATGTTTTACACAGGTAATATTCTTTTCAACA  499

seq1  GTTAGTGCTCTAAACTAGAGAATTATGAATCTGAAAACTTTTGAAAACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGCTCTAAACTAGAGAATTATGAATCTGAAAACTTTTGAAAACCT  549

seq1  TCATGCAATGTTCAAATC-TTAGATAATGTCAACTATTATGCTGGCAGTA  598
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCATGCAATGTTCAAATCTTTAGATAATGTCAACTATTATGCTGGCAGTA  599

seq1  ACTCTGAATATATGATAATG-AAGAAACA-TTTTCATT-AAACTTTTAC-  644
      |||||||||||||||||||| || ||||| |||||||| |||||||||| 
seq2  ACTCTGAATATATGATAATGAAAAAAACATTTTTCATTAAAACTTTTACT  649

seq1  TTGTTCA-CCCTCAAATATT--ATATGATGAAGTCAGGTGT-GAAAGCCA  690
      ||||||| ||||||||||||   | |||||||||||||||| ||||||||
seq2  TTGTTCACCCCTCAAATATTTATTTTGATGAAGTCAGGTGTGGAAAGCCA  699

seq1  GAAG-AATAT-GATG-TTGTGCAACAA-TTCATGGAGATAGAAA-TGATC  735
      |||| ||||| |||| ||||||||||| |||||||||||||||| |||||
seq2  GAAGAAATATGGATGTTTGTGCAACAATTTCATGGAGATAGAAATTGATC  749

seq1  CATTCCAAAAGGAAACTAAATAAAGAGTGTACTATC-GCCTTCAAAATGT  784
      ||||||||||| |||| |       ||||||||||| |||||||||||||
seq2  CATTCCAAAAGAAAACGA-------AGTGTACTATCGGCCTTCAAAATGT  792

seq1  CTAATAAAACT-GGCAGCATT  804
      ||||||||||| |||||||||
seq2  CTAATAAAACTGGGCAGCATT  813

seq1: chr4_145039050_145039750
seq2: B6Ng01-081P24.g_70_774 (reverse)

seq1  ATGGCCTTACCTTCAGCCTCTTTTCCATTCTTTGTCCCTCTTTTTCTTTA  50
      |||||||| |||||||||||||||||||||||||||| |||||||| |||
seq2  ATGGCCTTCCCTTCAGCCTCTTTTCCATTCTTTGTCCTTCTTTTTCCTTA  50

seq1  AGAGAGGAGCAATTTTGGGTCATTATATTTGAGGTGGGTATGATGTCAAA  100
      ||| |||||||||| ||||||||||||||||||||| ||||| |||||||
seq2  AGACAGGAGCAATTCTGGGTCATTATATTTGAGGTGCGTATGCTGTCAAA  100

seq1  TTTGAAAATAAAAGTTGGCAGGCTTTTATCATTTCCAGTCATTTGATATA  150
      ||||||||||| | || ||||||| ||||||||||||| |||||||||||
seq2  TTTGAAAATAACATTTAGCAGGCTATTATCATTTCCAGACATTTGATATA  150

seq1  AATCATATTTGAGGTTCTTCTGAGGATACATGTAATGATTCAAAAAAAAG  200
      ||||||||||| ||||||||| ||||||||||||||||||||||||| ||
seq2  AATCATATTTGGGGTTCTTCTTAGGATACATGTAATGATTCAAAAAAGAG  200

seq1  GAAAA------------AAAACCTCTTTTGAGAGTACAAATCCATGAGAT  238
        | |            ||||||||| |||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGGAAAACCTCTCTTGAGAGTACAAATCCATGAGAT  250

seq1  CACTGATTATTGAATCCCTTACTCCTTATATAAGTAAATCATGTCACCTC  288
      ||||||||||||| ||||||||||||||||||||||| |||| |||||||
seq2  CACTGATTATTGAGTCCCTTACTCCTTATATAAGTAATTCATTTCACCTC  300

seq1  TAATTGCCCCCCACCCGTTTTTTTTTTTTCAGGAAATCATTGCATATATG  338
      |||||||||        || | |||||||||| ||||||||||||| |||
seq2  TAATTGCCC--------TTATATTTTTTTCAGAAAATCATTGCATACATG  342

seq1  GAATGTATGGGAAGGTCATGGATCAAGACAGCCAGTACATTGTTCTTGAA  388
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATGAGAAGGTCATGGATCAAGACAGCCAGTACATTGTTCTTGAA  392

seq1  CACATGAATATTCAAGAGAAGTCTTCTAAATGTAACAAGCCTAGCAATGT  438
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  CACATGAATATTCAAGAGAAGTCTTCTAAATGGAACAAGCTTAGCAATGT  442

seq1  GTTTCTAGAATCCCCCCATTATACACCTCACAAATGTACTGAATGTGACA  488
      | ||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  GATTCTAGAATCCTCCCATTATACACCTCACAAATGTACTGAATGGGACA  492

seq1  AATGCTTTTCCCAAAAATCTCATCTTAATATTCATCAGAAAATTCATGCA  538
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  AATGCTTTTCCCAAAAATCCCATCTTAATTTTCATCAGAAAATTCATGCA  542

seq1  GGAGAGAAACCTTACAAATGCAGTGGATGTGACAAATGCTTTACTGAAAA  588
      ||||||||| ||||||||||||||| ||| |||||||||||||| |||||
seq2  GGAGAGAAATCTTACAAATGCAGTGAATGCGACAAATGCTTTACCGAAAA  592

seq1  AGGCAGTCTGAGAAGGCATCAGAGAATTCATACAGGAGAGAAACCTTACA  638
      ||||||||| ||||  ||||||||||||||||||||||||||||||||||
seq2  AGGCAGTCTCAGAATTCATCAGAGAATTCATACAGGAGAGAAACCTTACA  642

seq1  AATGCAGTGAATGTGACAAATGCTTTACTAGAAAAGGCACTCTGAGAATT  688
      |||| || ||||||||||||||||||||| ||||||||| ||||||||||
seq2  AATGTAGCGAATGTGACAAATGCTTTACTGGAAAAGGCAATCTGAGAATT  692

seq1  CATCAGAGAATTC  701
      |||||||||||||
seq2  CATCAGAGAATTC  705