BAC Information

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BAC

Clone NameB6Ng01-082C15
Chromosome17 (Build37)4 (Build37)
Map Location 61,939,920 - 61,941,05098,627,888 - 98,628,113
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC433129, EG620725, LOC100043560
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082C15.bB6Ng01-082C15.g
ACCDH896804DH896805
length1,216790
definitionDH896804|Mus musculus domesticus DNA, BAC clone: B6Ng01-082C15, 5' end.DH896805|Mus musculus domesticus DNA, BAC clone: B6Ng01-082C15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,939,920 - 61,941,050)(98,627,888 - 98,628,113)
sequence
gaattcccttatttaattctatatagtagttctggaggctcgtgccccag
tgtaggggaatgctagggaggtgagttgggagagggtgggtgagtggggg
tcaccactgtatactattatgtgtatatatgcacgatattatgttcctgt
ctctgtctctgtgaatgtggagaagtgtcaactaatatgtggttcaatca
atgtactacggcaatcccatatgctccaggatcagctgcgcgaggggtac
atttatataaatcctggaatccatcatttctccatggagctcaggatatt
tggatttgagaattatatcaataccaatatgtagaagctggaagttagaa
acaaccttagagaaaactgcaaggcaaaggatctctttaaaattcctctg
aatagcctttaggaaaacctgccagccttcgtaaagtttaaatatagtca
cagcatatcattttacctgtaagaagttggccaacagacagaatgttcac
tgaattactgagaaacacacacaaaaatggtaactgtacaccagggatag
actagaagcttggtattgtattctactgtccaggtgccgtgaggcaggat
gtgacaacatatctttattccggctaatccaggaagtgacgtgggttgac
tcttgagctgagctttcagcacgagaaactgcaaaagaaaccccaaccgg
cattacacttaaaggaaagcttagcaagtggaagaagtggctcattagtt
cagccttgaaaagaatgctctgttgttagaaaagaagagctgtttactta
aggtttgtaacagaagtgaagatcacatgcttcagggaaattttcttagt
tgtgttatggaaatgaaaaaaaattatcctgctgtttagagtctgagtct
ggacatttcttatccagaagatgagagatataaattgatttatgagtgac
atacagagaggaagcagtttgggaccagtgttggcagagcacagttgttc
aatcagctgactggctggtttgtgtgttactttgacacagactgagttat
tcacagagaaaggtacttcatttaagaaaaatcagctcctaagcatattt
ctcagtaatgatcagtgtggaggacctttgtgtgtggaacactctctgga
cggtagtcatgtttataaagaggagaatacgattcgttagcagcagaaga
aacatcctccccatgg
gaattcatctgggcaagctatggtaaagttggatgcattttacttactgt
atcaatctccatgttaactatgggtatgtttagattgttgttcttttctt
gttttaattttggtggttggtttgaatctacaaacttgtttatttcatta
agtttttctaacttaatgggaattgaacttttaaaaacgtattcccttat
aatctaaatttctttgatgtaaaattgtttttaaggtcatttctgattct
gtttatttgagtcattttatactttcttttgatggttgagccaagggtgt
atcagtcttgtttatatttttgaacactcagtttctatattacttgattg
tttcatagtttatatttatttatttactttgggttctgattttattattt
ttcagtgacatttttcagtttggatttgtttagtccttgtttttctatat
ttttgagttgcattgttaagtctgttatgatttcttaaaatgcatacact
taaaccattattttctcttattgaagtagatttaatgtattagagagaat
tttgtgtatgtttaccattttaatttagaaacctatcaaaacaatttctc
ttgatttctttaatccattcataattcagtaagaagtcattcaatctcca
taaatttgtgcacttaatagagaatttgtgttctgtcagtcataaattcc
agcgcattgtggtcagatagaatatgcaaagctatttcattgttcatgaa
ttatttaaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_61939920_61941050
seq2: B6Ng01-082C15.b_140_1255 (reverse)

seq1  CCATGGAG-GGATGTTTCTTCCTGGCTTGCTTCTCCTGACTTGCTCATCC  49
      |||||| | ||||||||||||      |||| ||   || |  |  || |
seq2  CCATGGGGAGGATGTTTCTTC------TGCTGCTAACGAAT--CGTATTC  42

seq1  TCCTCTTTTATAAAACCATGACTACCAGCTCAGAGATGGTCCCACCCACA  99
      ||||| ||||||||  |||||||||| |  ||||||  || |||| ||||
seq2  TCCTC-TTTATAAA--CATGACTACC-GTCCAGAGAGTGTTCCACACACA  88

seq1  AGGGGCCTCCCCACTTGATCATTAACTGAGAAA-ATGCCTTAGAGCTGGA  148
      | || ||||| ||| |||||||| ||||||||| |||| |  ||||||  
seq2  AAGGTCCTCCACAC-TGATCATT-ACTGAGAAATATGCTTAGGAGCTGAT  136

seq1  TTTTCTTAACTGAAGCTCCTTTCTCTGTG-ATAACTCCAGTCTGTGTCAA  197
      ||||||||| |||||  |||||||||||| |||||| |||||||||||||
seq2  TTTTCTTAAATGAAGTACCTTTCTCTGTGAATAACT-CAGTCTGTGTCAA  185

seq1  GGTAACACACAAAACCAGCCAGGTCAAGGCTGGATTGAACAACTGTGCTC  247
       ||||||||| |||||||||| ||||  ||| ||||||||||||||||||
seq2  AGTAACACAC-AAACCAGCCA-GTCA--GCT-GATTGAACAACTGTGCTC  230

seq1  TGCC-ACACTGTTCCCAAACTGCTTCCTCTCTGTATGTCACTCATAAATC  296
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACACTGGTCCCAAACTGCTTCCTCTCTGTATGTCACTCATAAATC  280

seq1  AATTTTATATTCTCTCATCTTCCTGGATAAGAAATGTCCAGACCTCAGAC  346
      || |||||| ||||||||||| |||||||||||||||||||| |||||||
seq2  AA-TTTATA-TCTCTCATCTT-CTGGATAAGAAATGTCCAGA-CTCAGAC  326

seq1  TCTAAACAGCAGGATAATTTTTCTTCATTTCCATAACACAACTAAGAAAA  396
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTAAACAGCAGGATAATTTTTTTTCATTTCCATAACACAACTAAGAAAA  376

seq1  TTTCCCTGAAGCATGTGATCTTCACTTCTGTTACAAACCTTAAGTAAACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGAAGCATGTGATCTTCACTTCTGTTACAAACCTTAAGTAAACA  426

seq1  GCTCTTC-TTTCTAACAACAGAGCATTCTTTTCAAGGCTGAACTAATGAG  495
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCTTTTCTAACAACAGAGCATTCTTTTCAAGGCTGAACTAATGAG  476

seq1  CCACTTCTTCCACTTGCTAAGCTTTCCTTTAAGTGT-ATGCCGGTTGGGG  544
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCACTTCTTCCACTTGCTAAGCTTTCCTTTAAGTGTAATGCCGGTTGGGG  526

seq1  TTTCTTTTGCAGTTTCTCGTGCTG-AAGCTCAGCTC-AGAGTCAACCCAC  592
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  TTTCTTTTGCAGTTTCTCGTGCTGAAAGCTCAGCTCAAGAGTCAACCCAC  576

seq1  GTCACTTCCTGGATTAGCCGGAAT-AAGATATGTTGTCACATCCTGCCTC  641
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTCACTTCCTGGATTAGCCGGAATAAAGATATGTTGTCACATCCTGCCTC  626

seq1  ACGGCACCTGGACAGTAGAATACAATACCAAGCTTCTAGTCTATCCCTGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCACCTGGACAGTAGAATACAATACCAAGCTTCTAGTCTATCCCTGG  676

seq1  TGTACAGTTACCATTTTTGTGTGTGTTTCTCAGTAATTCAGTGAACATTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGTTACCATTTTTGTGTGTGTTTCTCAGTAATTCAGTGAACATTC  726

seq1  TGTCTGTTGGCCAACTTCTTACAGGTAAAATGATATGCTGTGACTATATT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTGGCCAACTTCTTACAGGTAAAATGATATGCTGTGACTATATT  776

seq1  TAAACTTTACGAAGGCTGGCAGGTTTTCCTAAAGGCTATTCAGAGGAATT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTACGAAGGCTGGCAGGTTTTCCTAAAGGCTATTCAGAGGAATT  826

seq1  TTAAAGAGATCCTTTGCCTTGCAGTTTTCTCTAAGGTTGTTTCTAACTTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGATCCTTTGCCTTGCAGTTTTCTCTAAGGTTGTTTCTAACTTC  876

seq1  CAGCTTCTACATATTGGTATTGATATAATTCTCAAATCCAAATATCCTGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTACATATTGGTATTGATATAATTCTCAAATCCAAATATCCTGA  926

seq1  GCTCCATGGAGAAATGATGGATTCCAGGATTTATATAAATGTACCCCTCG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATGGAGAAATGATGGATTCCAGGATTTATATAAATGTACCCCTCG  976

seq1  CGCAGCTGATCCTGGAGCATATGGGATTGCCGTAGTACATTGATTGAACC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCTGATCCTGGAGCATATGGGATTGCCGTAGTACATTGATTGAACC  1026

seq1  ACATATTAGTTGACACTTCTCCACATTCACAGAGACAGAGACAGGAACAT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTAGTTGACACTTCTCCACATTCACAGAGACAGAGACAGGAACAT  1076

seq1  AATATCGTGCATATATACACATAATAGTATACAGTGGTGA  1131
      ||||||||||||||||||||||||||||||||||||||||
seq2  AATATCGTGCATATATACACATAATAGTATACAGTGGTGA  1116

seq1: chr4_98627888_98628113
seq2: B6Ng01-082C15.g_706_856 (reverse)

seq1  CACACACACACACACACACACACACACACATCTCTATTATAAAGTCACTT  50
      |||||||||||||||||||||||||||||||                 ||
seq2  CACACACACACACACACACACACACACACAT----------------TTT  34

seq1  AAATATTTTTTTTACATTTTTTCTCATCAACAGTTACCCAGGGTCTTTCA  100
      ||||| ||  |  ||| |          || || |   ||   ||| || 
seq2  AAATAATTCATGAACAAT--------GAAATAGCTTTGCATATTCTATCT  76

seq1  AATCCCATAATGCAAACAGGGTGGGTCACATGAAGGCTACCTGTACATGA  150
       |  ||| |||||      | |||   |  | | | ||  | | |||   
seq2  GA--CCACAATGC------GCTGG---AATTTATGACTGACAGAACA---  112

seq1  GATCAATCAGCATTTCTGGGTCTTCCTGATGCTCCTTCATCTTAACAGTG  200
         |||                      || |||     | |||  ||||
seq2  ---CAA----------------------ATTCTC-----TATTA--AGTG  130

seq1  TCAGAAAGGATCATATGGAGATTGAA  226
       || |||      |||||||||||||
seq2  -CACAAA----TTTATGGAGATTGAA  151