BAC Information

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BAC

Clone NameB6Ng01-082H11
Chromosome4 (Build37)
Map Location 13,523,148 - 13,646,127
singlet/doubletdoublet
Overlap genenone
Upstream geneOTTMUSG00000004461, LOC100039988
Downstream geneRunx1t1, LOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082H11.bB6Ng01-082H11.g
ACCDH897011DH897012
length5741,106
definitionDH897011|Mus musculus domesticus DNA, BAC clone: B6Ng01-082H11, 5' end.DH897012|Mus musculus domesticus DNA, BAC clone: B6Ng01-082H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,523,148 - 13,523,727)(13,645,010 - 13,646,127)
sequence
ttccaattctgcctttgcttactaagttcttcagtttttaaaactattac
ttgcacttttgtttttatatacaataagtcatagtgacatgcaataagtt
tctcatgtgtttttctaagagatttataattttttctcttgcatttagaa
cttattttgaattaacctcatctacggtgcaacttcagctttttgcaact
aaatacagcattttcctaacaccatttcttaataagactgtccttatatg
gtggcagtacaaatggttatgtagaaatacacacacacacacacacacac
acacacacacacacacaaacacacacacacatttcttcattcttcggtct
tactagaatgtctttacagaaatgatagataaatttcccagaaagaagtt
tccagtatgtttaaagtttacacttcaaatatttgtctcattgctgcagc
tctactttctgttgattgaagcaaacctagtgagcatctctgaattgaga
ggtgagggactggtaccaaccttgatgggacccggaatgaactctgaaga
gaggaggagggagagggggggagg
gaattctgtgaactgaccaaatcatcatgtgatgggtggattgggccctg
cttaagccagggcttcgctgggtggtgtaacatggaatgaggcctgcagc
ctgagtacacttattttctggaacctggcttgctttccattgtctgtctc
caagaattgcctatttgaataattatggtatatacttgttctctagaaca
tagttagtttttaatagtgtgtctccaagaattgtgtattttaataatta
tatagtggtctatgtatattttaggtagaaattatccttttcttcaaatt
tgcagagactcaaagtagttctgagatgatgagaagatggtacagaatcc
agtgtccaaggaagcacggcctgcattttgctctccgaaattctattccc
attctctataagatcttccccaaccaggtgttttagaatgacatgtgctg
acaacttatagcagatgaaggaagagatccctataggtgctggagaatac
tgacagaacataatttcgaaattaacttactatacaaattcttcagttta
tggtcactcacaccattttgattgctcagagacatctagtctgtcttcat
caatattaacagaaacacgacaggacaccatcatgggaatagcacccatg
aagagaacagaaagatgctccccctttgcaggtggctatgtccctgttct
cagacaagccaagctagtctgaaccctgatctctcatctgcagactgggg
acatagtttcaaagactttgaaggagaccttcagattcaaagtaatgtct
atgacttctagtttaatggatgcttcagtggatgtaataggcgtgtgggt
tagaggaaactccacaaactcttaattttttcgattttgtactaatgaag
aacccaaccacaaggaaactggcttcacttaatgtatatcgccttaacat
ctttgctagctaccctgtatatttgttgacttggttcaaagctatgtttc
tggtgctcacttacgagatttacagagaccctgctttctagatttatcac
tatgattattaaaataaattattttttcttgttaaattgagaaaaaatac
tgtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_13523148_13523727
seq2: B6Ng01-082H11.b_44_623

seq1  GAATTCTTCCAATTCTGCCTTTGCTTACTAAGTTCTTCAGTTTTTAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAATTCTGCCTTTGCTTACTAAGTTCTTCAGTTTTTAAAAC  50

seq1  TATTACTTGCACTTTTGTTTTTATATACAATAAGTCATAGTGACATGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTGCACTTTTGTTTTTATATACAATAAGTCATAGTGACATGCAA  100

seq1  TAAGTTTCTCATGTGTTTTTCTAAGAGATTTATAATTTTTTCTCTTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTCTCATGTGTTTTTCTAAGAGATTTATAATTTTTTCTCTTGCAT  150

seq1  TTAGAACTTATTTTGAATTAACCTCATCTACGGTGCAACTTCAGCTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTTATTTTGAATTAACCTCATCTACGGTGCAACTTCAGCTTTTT  200

seq1  GCAACTAAATACAGCATTTTCCTAACACCATTTCTTAATAAGACTGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTAAATACAGCATTTTCCTAACACCATTTCTTAATAAGACTGTCCT  250

seq1  TATATGGTGGCAGTACAAATGGTTATGTAGAAATACACACACACACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGTGGCAGTACAAATGGTTATGTAGAAATACACACACACACACAC  300

seq1  ACACACACACACACACACACACAAACACACACACACATTTCTTCATTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACAAACACACACACACATTTCTTCATTCTT  350

seq1  CGGTCTTACTAGAATGTCTTTACAGAAATGATAGATAAATTTCCCAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCTTACTAGAATGTCTTTACAGAAATGATAGATAAATTTCCCAGAAA  400

seq1  GAAGTTTCCAGTATGTTTAAAGTTTACACTTCAAATATTTGTCTCATTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTCCAGTATGTTTAAAGTTTACACTTCAAATATTTGTCTCATTGC  450

seq1  TGCAGCTCTACTTTCTGTTGATTGAAGCAAACCTAGTGAGCATCTCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTCTACTTTCTGTTGATTGAAGCAAACCTAGTGAGCATCTCTGAA  500

seq1  TTGAGAGGTGAGGGACTGGTACCAACCTTGATGGGACCCGGAATGAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGGTGAGGGACTGGTACCAACCTTGATGGGACCCGGAATGAACTC  550

seq1  TGAAGAGAGGAGGAGGGAGAGGGGGGGAGG  580
      ||||||||||||||||||||||||||||||
seq2  TGAAGAGAGGAGGAGGGAGAGGGGGGGAGG  580

seq1: chr4_13645010_13646127
seq2: B6Ng01-082H11.g_68_1173 (reverse)

seq1  CTCACAGTATTTTTTTTCCTCATTTTTAAACAAG-AAAAATAATTTATTT  49
      |||||||||||||||   |||| |||  |||||| |||||||||||||||
seq2  CTCACAGTATTTTTT---CTCAATTT--AACAAGAAAAAATAATTTATTT  45

seq1  TTATAATCATAGTGGATAAATTCTAGAAAGCAGGGTCCTCTGTAAATTCT  99
      | ||||||||||| |||||| ||||||||||||||| ||||||||| |||
seq2  TAATAATCATAGT-GATAAA-TCTAGAAAGCAGGGT-CTCTGTAAA-TCT  91

seq1  CGTTAGTGAGCA-CAGAAACCATAGCTTTGAACCAAGTC-ACAAATATAC  147
      ||| |||||||| |||||| ||||||||||||||||||| ||||||||| 
seq2  CGTAAGTGAGCACCAGAAA-CATAGCTTTGAACCAAGTCAACAAATATA-  139

seq1  CAGGGTAGCTAGCAAAGGATGTTTAAGGCGATATACATTTAAGTGAAGCC  197
      |||||||||||||||| |||| ||||||||||||||| ||||||||||||
seq2  CAGGGTAGCTAGCAAA-GATG-TTAAGGCGATATACA-TTAAGTGAAGCC  186

seq1  AGTTTCCTTGTGGTTTGGGTTCTTCATTAGTAC-AAATCGAATATAATTA  246
      ||||||||||||| ||||||||||||||||||| |||||||| | |||||
seq2  AGTTTCCTTGTGG-TTGGGTTCTTCATTAGTACAAAATCGAA-AAAATTA  234

seq1  AGAGTTTGTGGAGTTTCCTCTAACCCACACGCCTATTACATCCACTGAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGTGGAGTTTCCTCTAACCCACACGCCTATTACATCCACTGAAG  284

seq1  CATCCATTAAACTAGAAGTCATAGACATTACTTTGAATCTGAAGGTCTCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATTAAACTAGAAGTCATAGACATTACTTTGAATCTGAAGGTCTCC  334

seq1  TTCAAAGTCTTTGAAACTATGTCCCCAGTCTGCAGATGAGAGATCAGGGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTCTTTGAAACTATGTCCCCAGTCTGCAGATGAGAGATCAGGGT  384

seq1  TCAGACTAGCTTGGCTTGTCTGAGAACAGGGACATAGCCACCTGCAAAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTAGCTTGGCTTGTCTGAGAACAGGGACATAGCCACCTGCAAAGG  434

seq1  GGGAGCATCTTTCTGTTCTCTTCATGGGTGCTATTCCCATGATGGTGTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCATCTTTCTGTTCTCTTCATGGGTGCTATTCCCATGATGGTGTCC  484

seq1  TGTCGTGTTTCTGTTAATATTGATGAAGACAGACTAGATGTCTCTGAGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGTGTTTCTGTTAATATTGATGAAGACAGACTAGATGTCTCTGAGCA  534

seq1  ATCAAAATGGTGTGAGTGACCATAAACTGAAGAATTTGTATAGTAAGTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATGGTGTGAGTGACCATAAACTGAAGAATTTGTATAGTAAGTTA  584

seq1  ATTTCGAAATTATGTTCTGTCAGTATTCTCCAGCACCTATAGGGATCTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGAAATTATGTTCTGTCAGTATTCTCCAGCACCTATAGGGATCTCT  634

seq1  TCCTTCATCTGCTATAAGTTGTCAGCACATGTCATTCTAAAACACCTGGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCATCTGCTATAAGTTGTCAGCACATGTCATTCTAAAACACCTGGT  684

seq1  TGGGGAAGATCTTATAGAGAATGGGAATAGAATTTCGGAGAGCAAAATGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGATCTTATAGAGAATGGGAATAGAATTTCGGAGAGCAAAATGC  734

seq1  AGGCCGTGCTTCCTTGGACACTGGATTCTGTACCATCTTCTCATCATCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGTGCTTCCTTGGACACTGGATTCTGTACCATCTTCTCATCATCTC  784

seq1  AGAACTACTTTGAGTCTCTGCAAATTTGAAGAAAAGGATAATTTCTACCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTACTTTGAGTCTCTGCAAATTTGAAGAAAAGGATAATTTCTACCT  834

seq1  AAAATATACATAGACCACTATATAATTATTAAAATACACAATTCTTGGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATACATAGACCACTATATAATTATTAAAATACACAATTCTTGGAG  884

seq1  ACACACTATTAAAAACTAACTATGTTCTAGAGAACAAGTATATACCATAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTATTAAAAACTAACTATGTTCTAGAGAACAAGTATATACCATAA  934

seq1  TTATTCAAATAGGCAATTCTTGGAGACAGACAATGGAAAGCAAGCCAGGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAAATAGGCAATTCTTGGAGACAGACAATGGAAAGCAAGCCAGGT  984

seq1  TCCAGAAAATAAGTGTACTCAGGCTGCAGGCCTCATTCCATGTTACACCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAAATAAGTGTACTCAGGCTGCAGGCCTCATTCCATGTTACACCA  1034

seq1  CCCAGCGAAGCCCTGGCTTAAGCAGGGCCCAATCCACCCATCACATGATG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCGAAGCCCTGGCTTAAGCAGGGCCCAATCCACCCATCACATGATG  1084

seq1  ATTTGGTCAGTTCACAGAATTC  1118
      ||||||||||||||||||||||
seq2  ATTTGGTCAGTTCACAGAATTC  1106