BAC Information

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BAC

Clone NameB6Ng01-083C22
Chromosome4 (Build37)
Map Location 134,893,624 - 134,894,735
singlet/doubletsinglet
Overlap geneSrrm1
Upstream geneSlc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072
Downstream geneA330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083C22.bB6Ng01-083C22.g
ACCDH897518DH897519
length1,1061,207
definitionDH897518|Mus musculus domesticus DNA, BAC clone: B6Ng01-083C22, 5' end.DH897519|Mus musculus domesticus DNA, BAC clone: B6Ng01-083C22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggcatcacacttttcagattgatccttctgcttcgggaagaa
gtgatgcccgtgctcccttagggagagagagagagaccgatttcttctat
tggactttggcaaacagcatgtctcagtagtacgcacgtagcaatgtagc
aggcacggtattttgcagattgtgtaagattccctttcagccagttttta
atctcacacttaaggtagggtttctttttttcaggttctcaggaattctt
ctgccaaaggtgaattctgcaggtacacgtaattgcaacagaacttaacc
acagattttgctgcagaattcgagaggcccctacttctaagtttatgtag
ctaaatgaatttcaaatcttgcacatattttttagtgaaacttaaaagct
gcttgacgtcactctaaatgagcagtactctctcaccctcactgttgtgc
aaactccatgaccccagtattactcttcaggaagaagatgcttggctact
ggattatagcagtcacagcgcaaacacaatcaggagttatgtggatttac
tctcagaaatagctgtttcctgtcctaggttatggttttgtttccaatct
ttttgaagtaatttatgtacttagctacataaactcaaaagttggactaa
aagaaatagctgtgtttctgtgcatattgtacatactgtgatgtcactct
tgagagggatgcggatggtgaagtgagtgctttattccacagaaggaggc
gttcttccgcatccctgtctggaagtagctcgtcgtcctcttcatctcgt
tcccggtcaccaccaaagaaacctcccaagaggacatccagccctcctcg
gaaaacgcgtaggttatcaccttcagcaagtcctccacggcgaagacacc
ggccgtcatctccagcaactccgccacccaaaactcgccattccccaact
ccccagcagtcaaaccgtacaagaaaagtcgtgtttctgtgtctccagga
gacctccggtaaaggtacaaacaaaagcgctttgtccctttggcatctgg
gtgaacccagtcgtccctcccctcctcagaagcagctgggcggtactttc
tatatg
gaattctccttaatagggacggggtttcgttctctctctctcttgcttct
tacactcttgctcctgaagatgtaagcaataaagttttgccgcagaagat
tctggtttgttgcgtctttcctggccggtcgtgagaacgcgtctaataac
aattggtgccgaattccgggacgagaaaaaactcgggactggcgcaagga
aaatccctcattccagaaccagaactgcgggtcgcggtaataaaggttcc
cgtaaagcagactgttaagaaggattcaactgtatgaattcagaactttt
cagctggggaacgagagtaccagtgagtacagctttacgaggtaagtctg
atcttgaactttctaaggaaattcaagacagtctatcagaagtaaagtgg
aatatgtttggccttgaattttttctagtgttagaagcccttttgttcct
tttcacatgttatcaagtggttaaggcagggcggattctagatgaaattc
aggacaagctatcagaagtaaagtggggagagagagtaggagcaaagaga
aaatatggtacacaaaataagtatacaggcctttccaagggtcttgaacc
cgaggaaaagttaaggttaggtaggaatacctggagagagattagaagaa
aaagaggaaaaagggaaaagaagaaagatcaattagcggaggtctctagg
aaaaggagcctgtgctcatcgctggatgggctcggggagccagctcttag
tagctctgaagcagatgaagaattctcctctgaggaaacagactgggagg
aagaagcagctcattatgagaaaaaagggtaccagccaggtaaagtgcta
gcttatcagttaaggaagccaaaagcggctggcgaaggccagttgctgat
tgggctcaggcagtcggcttcaggtccgccctatgcgaagtccccgccct
gcgtagtgcgtcagctctgcgcagagagcagtgcgcagactcattcattt
ccagagagaacaaaggaaaatacacaggcattccggtcttggaggagccg
aggggtgggcgtgtgtcacgcgctccgtagaatacttacaattaaaggag
cttgcccgagtcgttcgtatacggaccaatgctaattttacctgggtcag
tttgaacggtcttcccgccatgacatacctcggtcgtacactggcaaacg
gtggtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134893624_134894735
seq2: B6Ng01-083C22.b_48_1153 (reverse)

seq1  CATATAGAAAGTACCGCCCAGCTGCTTCTGAAGGAGGGGAGGGACGACTG  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATATAGAAAGTACCGCCCAGCTGCTTCTG-AGGAGGGGAGGGACGACTG  49

seq1  GGTTCACCCAGATGCCAAAGGGAACAAAGCGCCTTTTGTTTGTACCTTTA  100
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  GGTTCACCCAGATGCCAAAGGG-ACAAAGCG-CTTTTGTTTGTACCTTTA  97

seq1  CCGGAGGTTCTTCCTGGAGACACAGAAACACGACTTTTTCTTGTACGGTT  150
      ||||||||   ||||||||||||||||||||||| |||||||||||||||
seq2  CCGGAGGT--CTCCTGGAGACACAGAAACACGAC-TTTTCTTGTACGGTT  144

seq1  TGACTGCTGGGGAGTTGGGGAATGGCGAGTTTTGGGTGGCGGAGTTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCTGGGGAGTTGGGGAATGGCGAGTTTTGGGTGGCGGAGTTGCTG  194

seq1  GAGATGACGGCCGGTGTCTTCGCCGTGGAGGACTTGCTGAAGGTGATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGACGGCCGGTGTCTTCGCCGTGGAGGACTTGCTGAAGGTGATAAC  244

seq1  CTACGCGTTTTCCGAGGAGGGCTGGATGTCCTCTTGGGAGGTTTCTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGCGTTTTCCGAGGAGGGCTGGATGTCCTCTTGGGAGGTTTCTTTGG  294

seq1  TGGTGACCGGGAACGAGATGAAGAGGACGACGAGCTACTTCCAGACAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACCGGGAACGAGATGAAGAGGACGACGAGCTACTTCCAGACAGGG  344

seq1  ATGCGGAAGAACGCCTCCTTCTGTGGAATAAAGCACTCACTTCACCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGAAGAACGCCTCCTTCTGTGGAATAAAGCACTCACTTCACCATCC  394

seq1  GCATCCCTCTCAAGAGTGACATCACAGTATGTACAATATGCACAGAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCTCTCAAGAGTGACATCACAGTATGTACAATATGCACAGAAACA  444

seq1  CAGCTATTTCTTTTAGTCCAACTTTTGAGTTTATGTAGCTAAGTACATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTTCTTTTAGTCCAACTTTTGAGTTTATGTAGCTAAGTACATAA  494

seq1  ATTACTTCAAAAAGATTGGAAACAAAACCATAACCTAGGACAGGAAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTCAAAAAGATTGGAAACAAAACCATAACCTAGGACAGGAAACAG  544

seq1  CTATTTCTGAGAGTAAATCCACATAACTCCTGATTGTGTTTGCGCTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTGAGAGTAAATCCACATAACTCCTGATTGTGTTTGCGCTGTGA  594

seq1  CTGCTATAATCCAGTAGCCAAGCATCTTCTTCCTGAAGAGTAATACTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATAATCCAGTAGCCAAGCATCTTCTTCCTGAAGAGTAATACTGGG  644

seq1  GTCATGGAGTTTGCACAACAGTGAGGGTGAGAGAGTACTGCTCATTTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGAGTTTGCACAACAGTGAGGGTGAGAGAGTACTGCTCATTTAGA  694

seq1  GTGACGTCAAGCAGCTTTTAAGTTTCACTAAAAAATATGTGCAAGATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGTCAAGCAGCTTTTAAGTTTCACTAAAAAATATGTGCAAGATTTG  744

seq1  AAATTCATTTAGCTACATAAACTTAGAAGTAGGGGCCTCTCGAATTCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATTTAGCTACATAAACTTAGAAGTAGGGGCCTCTCGAATTCTGC  794

seq1  AGCAAAATCTGTGGTTAAGTTCTGTTGCAATTACGTGTACCTGCAGAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATCTGTGGTTAAGTTCTGTTGCAATTACGTGTACCTGCAGAATT  844

seq1  CACCTTTGGCAGAAGAATTCCTGAGAACCTGAAAAAAAGAAACCCTACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTGGCAGAAGAATTCCTGAGAACCTGAAAAAAAGAAACCCTACCT  894

seq1  TAAGTGTGAGATTAAAAACTGGCTGAAAGGGAATCTTACACAATCTGCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTGAGATTAAAAACTGGCTGAAAGGGAATCTTACACAATCTGCAA  944

seq1  AATACCGTGCCTGCTACATTGCTACGTGCGTACTACTGAGACATGCTGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCGTGCCTGCTACATTGCTACGTGCGTACTACTGAGACATGCTGTT  994

seq1  TGCCAAAGTCCAATAGAAGAAATCGGTCTCTCTCTCTCTCCCTAAGGGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAGTCCAATAGAAGAAATCGGTCTCTCTCTCTCTCCCTAAGGGAG  1044

seq1  CACGGGCATCACTTCTTCCCGAAGCAGAAGGATCAATCTGAAAAGTGTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGCATCACTTCTTCCCGAAGCAGAAGGATCAATCTGAAAAGTGTGA  1094

seq1  TGCCTGGAATTC  1112
      ||||||||||||
seq2  TGCCTGGAATTC  1106