BAC Information

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BAC

Clone NameB6Ng01-084C19
Chromosome4 (Build37)
Map Location 49,658,493 - 49,790,944
singlet/doubletdoublet
Overlap geneRnf20, Ppp3r2
Upstream geneTmeff1, 2310039E09Rik, E130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742
Downstream geneLOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084C19.bB6Ng01-084C19.g
ACCDH898215DH898216
length1,096898
definitionDH898215|Mus musculus domesticus DNA, BAC clone: B6Ng01-084C19, 5' end.DH898216|Mus musculus domesticus DNA, BAC clone: B6Ng01-084C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,658,493 - 49,659,593)(49,790,050 - 49,790,944)
sequence
gaattcaaaaggctataaagtatatggagcggggagcagtctctatggag
gcacaatcaccatcaatgcccggaaggtaacatttgctccccctgggaca
tggtgcttccctgggaataggcctcgtgcctagggcctgcctgcattggt
tcccaggggacagtggcatttgcaggagtggagcagtggacatgggaaac
atgaagtgggatgatgtagttcttttctctttattctcacttgctgtttt
cctggtcctttgtagtttgaggaaatgaatgcagagcttgaggagaacaa
agagttggctcagaaccgacattgtgagctggagaagcttcgtcaagact
ttgaagaggtcactacacagaatgaaaagttgaaggtaggaggcacagct
ctgaaggacaaatgatttgttcatcaacttgtgaacctgcatactttatg
aggacaagaaaaaatgtggccaaatttagcctcttccatgacagctcaac
acatgaggtgtaccttaacacagcagaggccatttgtgacctgcccattg
ctaacatgctcggtaaagagttgcaagatttaggatgtctactcttgctt
ttctggttggtatacagaaacttaattagaagagatgggcaagaatggga
aaacggctccagattagaacgattggagaggaagaagcaaagttgtctct
gtctgcaggcgccatgatattgcgtatagggacctgagagaactagaact
gagctccttgaagttgaagaatgtaaaatcaccaacaacagacttgatag
aaactatctcatttcatatagcattaaaaatagtacatttaaccaaagat
cagtgtataatgaaactgtagatgtacagtggaatgttattcagctttga
aaaaggaaatttagtcatttggggcagcattgataaacttggggacatta
tactaagtgaaataaagcagtagagatagacatagtgtttgaaatatatg
ctgctaagaaaggggatctcatagagcagagaatagacttgagagaaaca
ttgctcagaaccaagttctccaacacaaagggcttatttgcctcag
gaattctagtaccagggtttctgatactctcacacagaaaacttgtaagc
caaacaccaagaaacatgaaataaaaataattttaaagttctttttttaa
aatagaaatcagcagggcccagataattttataattaagtctcctgtagc
aggagagcaaaacattaatccactaagatttatcttagtcatttcttagg
gaagtcgttcacttcctttcttttaaagatactttctacttcattttaaa
aatacaataacatttctctcaatgaattaaaggggggaagagctgggcat
ggtggcgcacgcctttaattccagcacttgagaggcagaggtaggcggat
ttctgagttcaaggccagcctggtctacaaagtgagttccaggacagcca
gggctacacagagaaaccctgtctcgaaaaaccaaaaaaaaaaagggggg
gggggaggaagagctaattggatccatctctgatttatctttttatttaa
acttttttaggtttatttactaacattttatatataagtgttttgcctgc
atatatgtctgtgcccatgtgcatgactggtacctgtagaagtctgaact
gtcaaatacactggaaatagagttagcacggttgtgagccaccatgtgga
cacttgggatgtgaacactgatccttttcaagaacagggagtgctcttag
ccatgaagtcattttttccaaccgtctataatttaatctttaaatactgt
aagtgcactttaatcatcattagagacctcacataaaccttctgatgacg
tctacacaatgcccacctgctccccgtgccagagatctctctgactttac
atatcattccaacatgtgtgttttaattgcaggccttccttgtctcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_49658493_49659593
seq2: B6Ng01-084C19.b_46_1141

seq1  GAATTCAAAAGGCTATAAAGTATATGGAGCGGGGAGCAGTCTCTATGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGGCTATAAAGTATATGGAGCGGGGAGCAGTCTCTATGGAG  50

seq1  GCACAATCACCATCAATGCCCGGAAGGTAACATTTGCTCCCCCTGGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATCACCATCAATGCCCGGAAGGTAACATTTGCTCCCCCTGGGACA  100

seq1  TGGTGCTTCCCTGGGAATAGGCCTCGTGCCTAGGGCCTGCCTGCATTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTTCCCTGGGAATAGGCCTCGTGCCTAGGGCCTGCCTGCATTGGT  150

seq1  TCCCAGGGGACAGTGGCATTTGCAGGAGTGGAGCAGTGGACATGGGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGGACAGTGGCATTTGCAGGAGTGGAGCAGTGGACATGGGAAAC  200

seq1  ATGAAGTGGGATGATGTAGTTCTTTTCTCTTTATTCTCACTTGCTGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTGGGATGATGTAGTTCTTTTCTCTTTATTCTCACTTGCTGTTTT  250

seq1  CCTGGTCCTTTGTAGTTTGAGGAAATGAATGCAGAGCTTGAGGAGAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCTTTGTAGTTTGAGGAAATGAATGCAGAGCTTGAGGAGAACAA  300

seq1  AGAGTTGGCTCAGAACCGACATTGTGAGCTGGAGAAGCTTCGTCAAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGGCTCAGAACCGACATTGTGAGCTGGAGAAGCTTCGTCAAGACT  350

seq1  TTGAAGAGGTCACTACACAGAATGAAAAGTTGAAGGTAGGAGGCACAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAGGTCACTACACAGAATGAAAAGTTGAAGGTAGGAGGCACAGCT  400

seq1  CTGAAGGACAAATGATTTGTTCATCAACTTGTGAACCTGCATACTTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGACAAATGATTTGTTCATCAACTTGTGAACCTGCATACTTTATG  450

seq1  AGGACAAGAAAAAATGTGGCCAAATTTAGCCTCTTCCATGACAGCTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAGAAAAAATGTGGCCAAATTTAGCCTCTTCCATGACAGCTCAAC  500

seq1  ACATGAGGTGTACCTTAACACAGCAGAGGCCATTTGTGACCTGCCCATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGGTGTACCTTAACACAGCAGAGGCCATTTGTGACCTGCCCATTG  550

seq1  CTAACATGCTCGGTAAAGAGTTGCAAGATTTAGGATGTCTACTCTTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATGCTCGGTAAAGAGTTGCAAGATTTAGGATGTCTACTCTTGCTT  600

seq1  TTCTGGTTGGTATACAGAAACTTAATTAGAAGAGATGGGCAAGAATGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTGGTATACAGAAACTTAATTAGAAGAGATGGGCAAGAATGGGA  650

seq1  AAACGGCTCCAGATTAGAACGATTGGAGAGGAAGAAGCAAAGTTGTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGCTCCAGATTAGAACGATTGGAGAGGAAGAAGCAAAGTTGTCTCT  700

seq1  GTCTGCAGGCGCCATGATATTGCGTATAGGGACCTGAGAGAACTAGAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCAGGCGCCATGATATTGCGTATAGGGACCTGAGAGAACTAGAACT  750

seq1  GAGCTCCTTGAAGTTGAAGAATGTAAAATCACCAACAACAGACTTGATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCTTGAAGTTGAAGAATGTAAAATCACCAACAACAGACTTGATAG  800

seq1  AAACTATCTCATTTCATATAGCATTAAAAATAGTACATTTAACCAAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATCTCATTTCATATAGCATTAAAAATAGTACATTTAACCAAAGAT  850

seq1  CAGTGTATAATGAAACTGTAGATGTACAGTGGAATGTTATTCAGCTTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTATAATGAAACTGTAGATGTACAGTGGAATGTTATTCAGCTTTGA  900

seq1  AAAAGGAAATTTAGTCATTTGGGGCAGCATTGATAAACTTGGGGACATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAATTTAGTCATTTGGGGCAGCATTGATAAACTTGGGGACATTA  950

seq1  TACTAAGTGAAATAAAGCAGGTAGAGATAGACATAGTGTTTGAAATATAT  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TACTAAGTGAAATAAAGCA-GTAGAGATAGACATAGTGTTTGAAATATAT  999

seq1  GGTTGCTAAGAAAGGGGATCTCATAGAAGCAGAGAATAGACTTGAGAGGA  1050
       | ||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  -GCTGCTAAGAAAGGGGATCTCATAG-AGCAGAGAATAGACTTGAGA-GA  1046

seq1  AACATTGGCTCAAGACCAAGTTCT-CAACACAAAGGGCTTTATTTGCCTC  1099
      |||||| |||||  |||||||||| ||||||||||||| |||||||||||
seq2  AACATT-GCTCAGAACCAAGTTCTCCAACACAAAGGGC-TTATTTGCCTC  1094

seq1  AG  1101
      ||
seq2  AG  1096

seq1: chr4_49790050_49790944
seq2: B6Ng01-084C19.g_67_963 (reverse)

seq1  TGAGACAA-GAAGGCCTGCATTTAAAACACACATGGTGGGATGATATGTA  49
      |||||||| ||||||||||| |||||||||||||| ||| ||||||||||
seq2  TGAGACAAGGAAGGCCTGCAATTAAAACACACATGTTGGAATGATATGTA  50

seq1  AAGTCAGAGAGATTCTATGGC-CGGGGAGCAGGTGGGCATTGTGTAGACG  98
      |||||||||||| ||| |||| ||||||||||||||||||||||||||||
seq2  AAGTCAGAGAGA-TCTCTGGCACGGGGAGCAGGTGGGCATTGTGTAGACG  99

seq1  TCATCAGAAGGTTTATGTGAGGTCTCTAATGATTGATT-AAGTGCACTTA  147
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  TCATCAGAAGGTTTATGTGAGGTCTCTAATGA-TGATTAAAGTGCACTTA  148

seq1  CAGTATTTCAAAGATTAAATTATAGACGGTTGG-AAAAATGACTTCATGG  196
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  CAGTATTT-AAAGATTAAATTATAGACGGTTGGAAAAAATGACTTCATGG  197

seq1  CTAAGAGCACTCCCTGTTCTTGAAAAGGATCAGTGTTCACATCCC-AGTG  245
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTAAGAGCACTCCCTGTTCTTGAAAAGGATCAGTGTTCACATCCCAAGTG  247

seq1  TCCACATGGTGGCTCACAACCGTGCTAACTCTATTTCCAGTGTATTTGAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATGGTGGCTCACAACCGTGCTAACTCTATTTCCAGTGTATTTGAC  297

seq1  AGTTCAGACTTCTACAGGTACCAGTCATGCACATGGGCACAGACATATAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGACTTCTACAGGTACCAGTCATGCACATGGGCACAGACATATAT  347

seq1  GCAGGCAAAACACTTATATATAAAATGTTAGTAAATAAACCTAAAAAAGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAAAACACTTATATATAAAATGTTAGTAAATAAACCTAAAAAAGT  397

seq1  TTAAATAAAAAGATAAATCAGAGATGGATCCAATTAGCTCTTCCTCCCCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAAAAGATAAATCAGAGATGGATCCAATTAGCTCTTCCTCCCCC  447

seq1  CCCCCCTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCC  497

seq1  TGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAA  547

seq1  ATCCGCCTACCTCTGCCTCTCAAGTGCTGGAATTAAAGGCGTGCGCCACC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGCCTACCTCTGCCTCTCAAGTGCTGGAATTAAAGGCGTGCGCCACC  597

seq1  ATGCCCAGCTCTTCCCCCCTTTAATTCATTGAGAGAAATGTTATTGTATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAGCTCTTCCCCCCTTTAATTCATTGAGAGAAATGTTATTGTATT  647

seq1  TTTAAAATGAAGTAGAAAGTATCTTTAAAAGAAAGGAAGTGAACGACTTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGAAGTAGAAAGTATCTTTAAAAGAAAGGAAGTGAACGACTTC  697

seq1  CCTAAGAAATGACTAAGATAAATCTTAGTGGATTAATGTTTTGCTCTCCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAAATGACTAAGATAAATCTTAGTGGATTAATGTTTTGCTCTCCT  747

seq1  GCTACAGGAGACTTAATTATAAAATTATCTGGGCCCTGCTGATTTCTATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGGAGACTTAATTATAAAATTATCTGGGCCCTGCTGATTTCTATT  797

seq1  TTAAAAAAAGAACTTTAAAATTATTTTTATTTCATGTTTCTTGGTGTTTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAGAACTTTAAAATTATTTTTATTTCATGTTTCTTGGTGTTTG  847

seq1  GCTTACAAGTTTTCTGTGTGAGAGTATCAGAAACCCTGGTACTAGAATTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAAGTTTTCTGTGTGAGAGTATCAGAAACCCTGGTACTAGAATTC  897