BAC Information

Click to search

BAC

Clone NameB6Ng01-084E23
Chromosome4 (Build37)
Map Location 136,449,503 - 136,578,512
singlet/doubletdoublet
Overlap geneC1qa, Epha8, Zbtb40
Upstream geneCnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc
Downstream geneWnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558, Eif4g3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084E23.bB6Ng01-084E23.g
ACCDH898305DH898306
length9481,085
definitionDH898305|Mus musculus domesticus DNA, BAC clone: B6Ng01-084E23, 5' end.DH898306|Mus musculus domesticus DNA, BAC clone: B6Ng01-084E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,449,503 - 136,450,467)(136,577,436 - 136,578,512)
sequence
gaattccagagacctgattggcactacctcttcttttgctaggcccccac
caccttgatggtttttctacccccttcatcctgcccccaccttgtctctg
gtcctggaacttgcagtggtcaggccaggcctcttcctgactctttcctc
aagtggaatttatgggatgaaggcagattggggcagtaggatagcccaac
ttaatgctctcattacctggatttggggttgggctggggtcctgtgtagg
gcattggggagggagctacatctaagccaggctctctacaccctgcatat
gctacatcctgacccacactagcaattcaggatacctagttgagcagccc
acagggtcttgctctttcagtcctcctgactgtccctccacttgtagccc
aggatatgctatgtggctaaggtaagggtgagggactgggaggagccgag
cgtggtgggctctgtattgtgaggtggtagtgatgaatcccttgctcttc
ggtcttgggcgcctctgtgcctggcctggctcttccagcaggtgtcaggc
tcggtccgtgctcagccttctccaccacgcccaccattctgccaggctca
gcttccaggttcagaggaattgcgggttttcagagtgtctggaatgtagg
ttaaggaaaggttccacactctccacttactgggtcaggcatgaccccac
aaagtgacaggagctctccactttgaggccagacagcctggcttagctgt
agatcccccaccttccagcaggtgccttatgtcaggagcctcagtggctg
ttttacactttgttttgaaagccagtacacgggtccccaaagtcaaagtc
tttcccagcctgtggaggtgtgcatcagcatgggggagggggctgaggat
cagagaaccaagatgactctgagtatatgtgtggcttgagttgagggg
gaattcattctacagtctcttggaagtgactctgtaagatttgctctgtg
tgtgagtgttttgcttgcttgtatgtctgtgtgctttgtttgtccctggt
gcctgtggaggccagaagagggcatcatcttccctaggactggggttacg
ggtgggtataagccaccctggggcactggtggcacattaggagagagaac
tcaaggaaatgtgcagggtaccctgtgactgggtgctcggccttcatcag
ttcattagtcagggttcaggttttctgggccatgcttgtttgacggaggc
ttttgcccagggcctctgttcttggtgatcgtctgcttctgcctggcacc
catcttatggaggaagtgtctctctcctctaatcaaggtttctccatcgt
tcagctttttggttattgtcaggaccatggcgccttacacacccttcaga
tgcaagctgaagcctggactccaggtaaggtttgtttctatttcccgggt
gtcagaacacatgagactagtagtagatgccaacagaagcagccatgatt
atttaacaaaagcagctactgtttctcttctatttaaagagaaattctca
cccttctcttaccccatggagataccacaattttgtcatcagtgtagagt
ccacaaatgcaaacctgagctgtgccctcattacctatctttcttcagtg
tcatctgggccatcctgtcagtgacctgtgggccgtctctctcctccttt
gtgctgttcagtttcctaaatcatttggactgtccttctgtttctgtctc
tagcgaagaccctcgctgggtttgttctgaatctcttttaatggtagagt
ctgcctttagaattatcctcctttaaatgcagaaacaccaccgaaataac
atattttaaaatacgtctttgaccatgtgtctttttaccacaaatctctc
tttgccttaggagaaaaacccaggtttttcatgtggcctactcactactg
tgcgcagatccctgtctgcctctccagacccacctcttgacttctctcac
ccccttgttcatatttctgcatcactggaatccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_136449503_136450467
seq2: B6Ng01-084E23.b_38_985

seq1  GAATTCCAGAGACCTGATTGGCACTACCTCTTCTTTTGCTAGGCCCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGACCTGATTGGCACTACCTCTTCTTTTGCTAGGCCCCCAC  50

seq1  CACCTTGATGGTTTTTCTACCCCCTTCATCCTGCCCCCACCTTGTCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGATGGTTTTTCTACCCCCTTCATCCTGCCCCCACCTTGTCTCTG  100

seq1  GTCCTGGAACTTGCAGTGGTCAGGCCAGGCCTCTTCCTGACTCTTTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAACTTGCAGTGGTCAGGCCAGGCCTCTTCCTGACTCTTTCCTC  150

seq1  AAGTGGAATTTATGGGATGAAGGCAGATTGGGGCAGTAGGATAGCCCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAATTTATGGGATGAAGGCAGATTGGGGCAGTAGGATAGCCCAAC  200

seq1  TTAATGCTCTCATTACCTGGATTTGGGGTTGGGCTGGGGTCCTGTGTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTCTCATTACCTGGATTTGGGGTTGGGCTGGGGTCCTGTGTAGG  250

seq1  GCATTGGGGAGGGAGCTACATCTAAGCCAGGCTCTCTACACCCTGCATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGGGAGGGAGCTACATCTAAGCCAGGCTCTCTACACCCTGCATAT  300

seq1  GCTACATCCTGACCCACACTAGCAATTCAGGATACCTAGTTGAGCAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATCCTGACCCACACTAGCAATTCAGGATACCTAGTTGAGCAGCCC  350

seq1  ACAGGGTCTTGCTCTTTCAGTCCTCCTGACTGTCCCTCCACTTGTAGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTCTTGCTCTTTCAGTCCTCCTGACTGTCCCTCCACTTGTAGCCC  400

seq1  AGGATATGCTATGTGGCTAAGGTAAGGGTGAGGGACTGGGAGGAGCCGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGCTATGTGGCTAAGGTAAGGGTGAGGGACTGGGAGGAGCCGAG  450

seq1  CGTGGTGGGCTCTGTATTGTGAGGTGGTAGTGATGAATCCCTTGCTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTGGGCTCTGTATTGTGAGGTGGTAGTGATGAATCCCTTGCTCTTC  500

seq1  GGTCTTGGGCGCCTCTGTGCCTGGCCTGGCTCTTCCAGCAGGTGTCAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGGGCGCCTCTGTGCCTGGCCTGGCTCTTCCAGCAGGTGTCAGGC  550

seq1  TCGGTCCGTGCTCAGCCTTCTCCACCACGCCCACCATTCTGCCAGGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTCCGTGCTCAGCCTTCTCCACCACGCCCACCATTCTGCCAGGCTCA  600

seq1  GCTTCCAGGTTCAGAGGAATTGCGGGTTTTCAGAGTGTCTGGAATGTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAGGTTCAGAGGAATTGCGGGTTTTCAGAGTGTCTGGAATGTAGG  650

seq1  TTAAGGAAAGGTTCCACACTCTCCACTTACTGGGTCAGGCATGACCCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAAAGGTTCCACACTCTCCACTTACTGGGTCAGGCATGACCCCAC  700

seq1  AAAGTGACAGGAGCTCTCCACTTTGAGGCCAGACAGCCTGGCTTAGCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGACAGGAGCTCTCCACTTTGAGGCCAGACAGCCTGGCTTAGCTGT  750

seq1  AGATCCCCCACCTTCCAGCAGGGTGCCTTATGTCAGGGAGCCTCAGTGGC  800
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  AGATCCCCCACCTTCCAGCA-GGTGCCTTATGTCA-GGAGCCTCAGTGGC  798

seq1  TGTTTTACACTTTGTTTTGAAAGCCAGTACACGGGGTCCCCAAAGTCAAA  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTTTTACACTTTGTTTTGAAAGCCAGTACAC-GGGTCCCCAAAGTCAAA  847

seq1  GTCTTTCCCAGCCTGTGGAGGTGTGCATTCAGGCATGGGGGGAGGGGGGG  900
      ||||||||||||||||||||||||||| ||| ||||||||   | |||||
seq2  GTCTTTCCCAGCCTGTGGAGGTGTGCA-TCA-GCATGGGG---GAGGGGG  892

seq1  CTGAGGGATCAAGAAGAAGCCAAGAAGGAACTCTGAGGATCATGTGGTGG  950
      |||| ||||||   |||| |||||| |  |||||||| || |||| ||||
seq2  CTGA-GGATCA--GAGAA-CCAAGATG--ACTCTGAGTAT-ATGT-GTGG  934

seq1  CTTGGAGTTGAGGGG  965
      ||| |||||||||||
seq2  CTT-GAGTTGAGGGG  948

seq1: chr4_136577436_136578512
seq2: B6Ng01-084E23.g_70_1154 (reverse)

seq1  ATGGAT--CAGTGATGCTAGAATATGAACAGGGGGTTGAGAG-AGTCAAG  47
      ||||||  |||||||||   |||||||||| |||| |||||| |||||||
seq2  ATGGATTCCAGTGATGCAGAAATATGAACAAGGGGGTGAGAGAAGTCAAG  50

seq1  AGGTGGGTCTGGAGAGGCAGACAGGGATCTGCGCACAGTAGTGAGTAGGC  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGTCTGGAGAGGCAGACAGGGATCTGCGCACAGTAGTGAGTAGGC  100

seq1  CACATGGAAGAACCTGGG-TTTTCTCTTAAGGCAAAGAGAGATTTGTGGT  146
      ||||| ||| |||||||| ||||||| |||||||||||||||||||||||
seq2  CACAT-GAAAAACCTGGGTTTTTCTCCTAAGGCAAAGAGAGATTTGTGGT  149

seq1  AAAAAGACACATGGTCAAAGACGTATTTT-AAATATGTTATTTCGGTGGT  195
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAAAGACACATGGTCAAAGACGTATTTTAAAATATGTTATTTCGGTGGT  199

seq1  GTTTCTGCATTT-AAGGAGGATAATTCTAAAGGCAGACTCTACCATTAAA  244
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGCATTTAAAGGAGGATAATTCTAAAGGCAGACTCTACCATTAAA  249

seq1  AGAGATTCAGAACAAA-CCAGCGAGGGTCTTCGCTAGAGACAGAAACAGA  293
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAGATTCAGAACAAACCCAGCGAGGGTCTTCGCTAGAGACAGAAACAGA  299

seq1  AGGACAGTCCAAGTGATTTAGG-AACTGAACAGCACGAAGGAGGAGAGAG  342
      |||||||||||| ||||||||| ||||||||||||| |||||||||||||
seq2  AGGACAGTCCAAATGATTTAGGAAACTGAACAGCACAAAGGAGGAGAGAG  349

seq1  ACGGCCCACAGGTCACTGACAGGATGGCCCAGATGACACTGAAG-AAGAT  391
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACGGCCCACAGGTCACTGACAGGATGGCCCAGATGACACTGAAGAAAGAT  399

seq1  AGGTAATGAGGGCACAGCTCAGGTTTGCATTTGTGGACTCTACACTGATG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATGAGGGCACAGCTCAGGTTTGCATTTGTGGACTCTACACTGATG  449

seq1  ACAAAATTGTGGTATCTCCATGGGGTAAGAGAAGGGTGAGAATTTCTCTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTGTGGTATCTCCATGGGGTAAGAGAAGGGTGAGAATTTCTCTT  499

seq1  TAAATAGAAGAGAAACAGTAGCTGCTTTTGTTAAATAATCATGGCTGCTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAAGAGAAACAGTAGCTGCTTTTGTTAAATAATCATGGCTGCTT  549

seq1  CTGTTGGCATCTACTACTAGTCTCATGTGTTCTGACACCCGGGAAATAGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGCATCTACTACTAGTCTCATGTGTTCTGACACCCGGGAAATAGA  599

seq1  AACAAACCTTACCTGGAGTCCAGGCTTCAGCTTGCATCTGAAGGGTGTGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCTTACCTGGAGTCCAGGCTTCAGCTTGCATCTGAAGGGTGTGT  649

seq1  AAGGCGCCATGGTCCTGACAATAACCAAAAAGCTGAACGATGGAGAAACC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGCCATGGTCCTGACAATAACCAAAAAGCTGAACGATGGAGAAACC  699

seq1  TTGATTAGAGGAGAGAGACACTTCCTCCATAAGATGGGTGCCAGGCAGAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAGAGGAGAGAGACACTTCCTCCATAAGATGGGTGCCAGGCAGAA  749

seq1  GCAGACGATCACCAAGAACAGAGGCCCTGGGCAAAAGCCTCCGTCAAACA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACGATCACCAAGAACAGAGGCCCTGGGCAAAAGCCTCCGTCAAACA  799

seq1  AGCATGGCCCAGAAAACCTGAACCCTGACTAATGAACTGATGAAGGCCGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCCCAGAAAACCTGAACCCTGACTAATGAACTGATGAAGGCCGA  849

seq1  GCACCCAGTCACAGGGTACCCTGCACATTTCCTTGAGTTCTCTCTCCTAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAGTCACAGGGTACCCTGCACATTTCCTTGAGTTCTCTCTCCTAA  899

seq1  TGTGCCACCAGTGCCCCAGGGTGGCTTATACCCACCCGTAACCCCAGTCC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCACCAGTGCCCCAGGGTGGCTTATACCCACCCGTAACCCCAGTCC  949

seq1  TAGGGAAGATGATGCCCTCTTCTGGCCTCCACAGGCACCAGGGACAAACA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAGATGATGCCCTCTTCTGGCCTCCACAGGCACCAGGGACAAACA  999

seq1  AAGCACACAGACATACAAGCAAGCAAAACACTCACACACAGAGCAAATCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACAGACATACAAGCAAGCAAAACACTCACACACAGAGCAAATCT  1049

seq1  TACAGAGTCACTTCCAAGAGACTGTAGAATGAATTC  1077
      ||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTCACTTCCAAGAGACTGTAGAATGAATTC  1085