BAC Information

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BAC

Clone NameB6Ng01-084F11
Chromosome4 (Build37)6 (Build37)
Map Location 10,663,116 - 10,663,729133,658,855 - 133,659,900
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGdf6, 4930448K20Rik, LOC666840
Downstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084F11.bB6Ng01-084F11.g
ACCDH898329DH898330
length7851,040
definitionDH898329|Mus musculus domesticus DNA, BAC clone: B6Ng01-084F11, 5' end.DH898330|Mus musculus domesticus DNA, BAC clone: B6Ng01-084F11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,663,116 - 10,663,729)(133,658,855 - 133,659,900)
sequence
gaattcagttttgtcgtggaatactttggtttatccatctatggtaattg
agagtttggctgggtatagtagcctggctagaatttgtgttctcttagtg
tctgtataacatctgtccaggctcttctggctttcatagtctctggtgaa
aaatctggtgtaattctgataggcttgcctttatatgttacttgaccatt
ttcccttactggttttagtattctatctttatttagtgcatttgataatc
tgattattatgtgtcgggaggaatttctttctggtccagtctatttggag
ttctgtagccttcttgtatgttcatgggcatctctttctttagatttggg
aagttttcttcaataattttgttgaagatgtttgctggtcctttgagttg
aaaaatcttcattctcatccactcctattatccgtaggtttgtttttctc
attgtgtcctggatttcctggatgttttgagttaggatctttttgcattt
tgcattttctttgattgttgtgccgatgttctctatggaatcttctgcac
ctgagattctctcttccatctcttgtattctgttgctgatgctcgcatct
atggttccagatttctttcctagggtttctatctccagcgttgcctcact
ttgggttttctttatggtatctacttccctttttaggtctagtatgggtt
tgttcatttccatcacctgtttggatgtgttttcctgtttttctataagg
acttctacgtgtttggttgtgttttcctgcttttc
gaattcaacgctgggaagacagacccactctcccctagctagctatctgt
tctttgtttatttgctgataacattctatgttctcttcctgtaggaatcc
ttaataaatatttaaattctttgttaaatctttctggactagagcgagtt
tgtctctatctttattttttgttattgaaattgcccatcacctgtgtggt
ggtcagaggacaactggtcagcacaggtgacaacctccagttgttacctg
tcccccatggttaaaggagaggacgatccttccaagctgttcttcaagtt
ctaccaggaaaaggatcaaataatcacacagacacatagacacaaattat
atgtgcacacttacacagaaaaagagggggagggagaaagagagaggagg
caagaaggggaagagagagagaagagaggagagagagagagagagagaga
gagagagagagagagagaggtgcacaaatgtagactagaaaagtcagaaa
attcaaatacttcttcaaatacttcttcgatgggataaggtacatagctg
ctcatcctggaatgctaggaatgatgtaatcattcaacctatctgtctgt
ttgattcaggactaaattttatccaaatttacatttttattcatcccaga
ccccactcctaattctcacacagtgcattttagcccagaaaacctactct
tatgattgatgtcacttgtaggttacaagagcctaagttttcacctgcat
taactttggatcagaaaattctgacatccacaagaactatgattctctca
ggtaaaatgcatagtcttgggtactatctcagtgtcaaaagaactcattt
gttgaaagaatgaagatatatcttgtaaagaaattcagagtaagaatgta
tttaaaaatattttgcactgggaattggagttaatttttatctgatagta
tttcagaagtttgttattttaattatgtttttaaaacgatacgtccaact
caggcgtcttggttcggcatgtgtgtatgaaatccatcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_10663116_10663729
seq2: B6Ng01-084F11.b_44_656 (reverse)

seq1  AATCTGGAACCATAGATGCCAGCATCAGCAACAGAATACAAGAGATGGAA  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATCTGGAACCATAGATGCGAGCATCAGCAACAGAATACAAGAGATGGAA  50

seq1  GAGAGAATCTCAGGTGCAGAAGACTCCATAGAGAACATCGGCACAACAAT  100
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACAAT  100

seq1  CAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAA  150
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAATGCAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAA  150

seq1  TACAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAG  200
      | |||||||||||||||| | |||||||||||||||||||||||||||||
seq2  TCCAGGACACAATGAGAAAAACAAACCTACGGATAATAGGAGTGGATGAG  200

seq1  AATGAAGA-TTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTA  249
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGATTTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTA  250

seq1  TTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAA  300

seq1  GAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCG  349
      |||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAAGGCTACAGAACTCCAAATAGACTGGACCAG-AAAGAAATTCCTCCCG  349

seq1  ACACATAATAATCAGAACACCAAATGCACTAAATAAAGATAGAATACTAA  399
      ||||||||||||||||  | ||||||||||||||||||||||||||||||
seq2  ACACATAATAATCAGATTATCAAATGCACTAAATAAAGATAGAATACTAA  399

seq1  AAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGA  449
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AACCAGTAAGGGAAAATGGTCAAGTAACATATAAAGGCAAGCCTATCAGA  449

seq1  ATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGAC  499

seq1  AGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTAT  549
      |||||||||||||||||||||||||||||||| | || ||||||||||||
seq2  AGATGTTATACAGACACTAAGAGAACACAAATTCTAG-CCAGGCTACTAT  548

seq1  ACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCAC  599
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACCCAGCCAAACTCTCAATTACCATAGATGGATAAACCAAAGTATTCCAC  598

seq1  GACAAAACTAAATTC  614
      ||||||||| |||||
seq2  GACAAAACTGAATTC  613

seq1: chr6_133658855_133659900
seq2: B6Ng01-084F11.g_68_1107

seq1  GAATTCAATGCTGGGAAGACAGACCCACTCTCCCCTAGCTAGCTATCTGT  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACGCTGGGAAGACAGACCCACTCTCCCCTAGCTAGCTATCTGT  50

seq1  TCTTTGTTTATTTGCTGATAACATTCTATGTTCTCTTCCTGTAGGAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTATTTGCTGATAACATTCTATGTTCTCTTCCTGTAGGAATCC  100

seq1  TTAATAAATATTTAAATTCTTTGTTAAATCTTTCTGGACTAGAGCGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAATATTTAAATTCTTTGTTAAATCTTTCTGGACTAGAGCGAGTT  150

seq1  TGTCTCTATCTTTATTTTTTGTTATTGAAATTGCCCATCACCTGTGTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTATCTTTATTTTTTGTTATTGAAATTGCCCATCACCTGTGTGGT  200

seq1  GGTCAGAGGACAACTGGTCAGCACAGGTGACAACCTCCAGTTGTTACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAGGACAACTGGTCAGCACAGGTGACAACCTCCAGTTGTTACCTG  250

seq1  TCCCCCATGGTTAAAGGAGAGGACGATCCTTCCAAGCTGTTCTTCAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCATGGTTAAAGGAGAGGACGATCCTTCCAAGCTGTTCTTCAAGTT  300

seq1  CTACCAGGAAAAGGATCAAATAATCACACAGACACATAGACACAAATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGGAAAAGGATCAAATAATCACACAGACACATAGACACAAATTAT  350

seq1  ATGTGCACACTTACACAGAAAAAGAGGGGGAGGGAGAAAGAGAGAGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCACACTTACACAGAAAAAGAGGGGGAGGGAGAAAGAGAGAGGAGG  400

seq1  CAAGAAGGGGAAGAGAGAGAGAAGAGAGGAGAGAGAGAGAGAGAGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGGGAAGAGAGAGAGAAGAGAGGAGAGAGAGAGAGAGAGAGAGA  450

seq1  GAGAGAGAGAGAGAGAGAGGTGCACAAATGTAGACTAGAAAAGTCAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGGTGCACAAATGTAGACTAGAAAAGTCAGAAA  500

seq1  ATTCAAATACTTCTTCAAATACTTCTTCGATGGGATAAGGTACATAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATACTTCTTCAAATACTTCTTCGATGGGATAAGGTACATAGCTG  550

seq1  CTCATCCTGGAATGCTAGGAATGATGTAATCATTCAACCTATCTGTCTG-  599
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTCATCCTGGAATGCTAGGAATGATGTAATCATTCAACCTATCTGTCTGT  600

seq1  TTGATTCAGGACTAAA-TTTATCCAAATTTACATTTTTATTCATCCCAGA  648
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGATTCAGGACTAAATTTTATCCAAATTTACATTTTTATTCATCCCAGA  650

seq1  CCCCACTCCTAATTCTCACACAGTGCA-TTTAGCCCAGAAAACCTACTCT  697
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCCCACTCCTAATTCTCACACAGTGCATTTTAGCCCAGAAAACCTACTCT  700

seq1  TATGATTGATGTCACTTGTAGGTTACAAGAGCCTAAG-TTTCACCTGCAT  746
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TATGATTGATGTCACTTGTAGGTTACAAGAGCCTAAGTTTTCACCTGCAT  750

seq1  TAACTTAGGATCAGAAAAATTCTGACATCCACAAGAACTATGATTCTCTC  796
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  TAACTTTGGATCAG-AAAATTCTGACATCCACAAGAACTATGATTCTCTC  799

seq1  AGGTAAAATGCATAGTCTTGGGTACTATCTCAGTGTCAAAAGAACTCATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAATGCATAGTCTTGGGTACTATCTCAGTGTCAAAAGAACTCATT  849

seq1  TGTTGAAAGAATGAAGATATATCTTGTAAAGAAATTCAGAGTAAGAATGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAAGAATGAAGATATATCTTGTAAAGAAATTCAGAGTAAGAATGT  899

seq1  ATTT-AAAATATTTTGCACTTGGAATT-GAGTTAATTTTTATCTGAATAG  944
      |||| ||||||||||||||| |||||| ||||||||||||||||| ||||
seq2  ATTTAAAAATATTTTGCACTGGGAATTGGAGTTAATTTTTATCTG-ATAG  948

seq1  TATTTTCAGAAGTTTTGTTATCTTTAATTATGTTTTTTAAAACGATTATG  994
      || ||||||||| |||||||| |||||||||| |||||||||||| || |
seq2  TA-TTTCAGAAG-TTTGTTAT-TTTAATTATG-TTTTTAAAACGA-TACG  993

seq1  TCCAAACTCAAGGCGTCTTGGTTCGGCAATGTGTGTATTGAAATCCAATC  1044
      ||| ||||| ||||||||||||||||| ||||||||| |||||||| |||
seq2  TCC-AACTC-AGGCGTCTTGGTTCGGC-ATGTGTGTA-TGAAATCC-ATC  1038

seq1  GA  1046
      ||
seq2  GA  1040