BAC Information

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BAC

Clone NameB6Ng01-084I20
Chromosome4 (Build37)
Map Location 73,584,554 - 73,739,478
singlet/doubletdoublet
Overlap gene2310002L09Rik, Frmd3
Upstream geneLOC667713, LOC100039698, OTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010
Downstream geneLOC100039774, Jmjd2c, LOC100040258, LOC100039814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084I20.bB6Ng01-084I20.g
ACCDH898473DH898474
length1,1591,089
definitionDH898473|Mus musculus domesticus DNA, BAC clone: B6Ng01-084I20, 5' end.DH898474|Mus musculus domesticus DNA, BAC clone: B6Ng01-084I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,738,307 - 73,739,478)(73,584,554 - 73,585,643)
sequence
gaattctttggttgctatggcacttgaagaatgaaagagagctagatctg
actaaagaaaaaaaaatccagctgggcggtggtggcacaagcctttaata
ccagcacacagagtgcagatgcagtcagatctctgtgagttcaaggccag
cctggtcaacagagtgaggctctagggctgttatacagagaaacaggtca
tccaggaacccaatagctttgaaattgctaatttcattatttgatcctac
attctcagttgcttcaccaagttcctccaacaaagattacaaattttcat
tactcagagggtcaaagaatacttcgggccagaaggatattaacactatc
caacataaggacaacctctacagatcatgttaacccctttaccctccaac
tgttgatctctgcccccactcagttggaacatcttccaaacaataactcc
atttccaaatgaagatcatcttataaaatttcttgtcttgaaacttcttc
agtgcaactttttatccctttagagttgggatatgttggaataaacatag
ttttgctcagaagtacttagttctgctcccactggaactctgcatatcag
aaaaactgcagacagcccagactcaacacctgaaacttctctactctcaa
ttccctgacataagcctactcaatgtcaccctgagggttcaagctctttt
cctgcagaaagagtattgcctttcattgtttcaatgaaaagacagtctgc
ttctgtggaggttggagttgttttcatgaaactgcttccactttgaaata
ggaatttgggataacctaaatttgcttttcctaggccatggtcactcaaa
acagctccagagtagactatttcttattcttgcttgaaattgttggtttt
tgcatcaacaatatacacatgaatgaaactctcataaaaagctatacctt
caaactgaaaccttctacaaggctgatagaactttaggtgattggagcca
gtatgtccaaacctagttaaaatttatctaggggcatcttttcactacta
atggtcatctttcccatttcatggtgggatctacattctagtggctacag
taaaggctttataattcttagctaacaaaacatatttctacagtcaagga
ttcatctga
gaattctcctctctctaagttgtttttgtcatagtgtttttgttacagtg
actgaaacctaagcaggacagaaatgttgtatgataattctatgcccaga
gaacaattcatttacataacttgacagtgagaattggtcttatctgattt
gccatttgaaaaaccagaagatcacctgtgccaggaaactcaagctgaca
agtaagttagagctattttatgtcaataaaattagagtagaataaaacag
aatttttaacttctgaagaatatagctggcattcaactttttccaatttt
ttcttgactctgaaaagttattttcttagaaggtaaatggttagaatcat
ggttctgtggataagaagaaccaatttcagctggagaaggtgctggaact
taaaagaaatgttttgatgtgtacaatctacagaagatatcttttaattc
tatcaagaatagttttgtaactaaaggtgcaaattcgggttgtatggttc
catccagcattctattataaactgattcatagttccttctttctttggtg
gaggctgtgacaagtcttgtctatgacaggccaccttcaatgtccaagcc
tcagcaaagatatgcttctttatcacttctttgtagtaagactggaagtt
tgataacccaagtattatccaccataaggccaccttttcaacccaagtat
ataaaagacacactatcagaagaagattcatattggctttactgaaggat
aggtgaatacaggtgaagcctgaggcccaaatgatgtttctttcttcctc
tctgaagtgatgacagctgagctcctctaggctcactcatgaacttctca
tcccagtcagagactgaagctggaatgtggaaatcaaatcttggatgggt
ccgacatatgcaggtcctactgactctggctatggcatagagactggaac
ttcaaagcaggtccaggatagacagggtaagagagaagagcagaaaatta
gtaagcagagtccttcagtaagttatcttcccaaagttggaaaaatttta
cccaagatgcctcagttccattcagctggcaacaacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_73738307_73739478
seq2: B6Ng01-084I20.b_45_1203 (reverse)

seq1  TCAGATGTAATCCTTTGACTGGTAGAAAATAATGTTTTGTTAAGCTAAAG  50
      ||||||| ||||| |||||| |||||||   |||||||||| |||| |||
seq2  TCAGATG-AATCC-TTGACT-GTAGAAA--TATGTTTTGTT-AGCT-AAG  43

seq1  AATTTATAAAGCCTTTTACCTGTTAGCCACTAGATGTTAGATCCAACAAT  100
      || |||||||||||||   ||| |||||||||||   ||||||| || ||
seq2  AA-TTATAAAGCCTTT--ACTG-TAGCCACTAGAATGTAGATCCCACCAT  89

seq1  GAAATGGGAAAGGAATGACCATTTAGTAGTGGAAAGATGGCCCTAGATAA  150
      ||||||||||||  ||||||| ||||||||| ||||||| ||||||||||
seq2  GAAATGGGAAAG--ATGACCA-TTAGTAGTGAAAAGATGCCCCTAGATAA  136

seq1  ATTTTAACTAGGTTTTGGACATACTGGCT-CAATCA-CTAAAGTTCTAAT  198
      |||||||||||| |||||||||||||||| |||||| |||||||||| ||
seq2  ATTTTAACTAGG-TTTGGACATACTGGCTCCAATCACCTAAAGTTCT-AT  184

seq1  CAGCCTTGTAGAAGGTTTCAGTTTGAAGGTATAGCTTTTTATGAGAGTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGTAGAAGGTTTCAGTTTGAAGGTATAGCTTTTTATGAGAGTTT  234

seq1  CATTCATGTGTATATTGTTGATGCAAAAACCAACAATTTCAAGCAAGAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATGTGTATATTGTTGATGCAAAAACCAACAATTTCAAGCAAGAAT  284

seq1  AAGAAATAGTCTACTCTGGAGCTGTTTTGAGTGACCATGGCCTAGG-AAA  347
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGAAATAGTCTACTCTGGAGCTGTTTTGAGTGACCATGGCCTAGGAAAA  334

seq1  GCAAATTTAGGTTATCCCAAATTCCTATTTCAAAGTGGAAGCAGTTTCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTTAGGTTATCCCAAATTCCTATTTCAAAGTGGAAGCAGTTTCAT  384

seq1  GAAAACAACTCCAACCTCCACAGAAGCAGACTGTCTTTTCATTGAAACAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAACTCCAACCTCCACAGAAGCAGACTGTCTTTTCATTGAAACAA  434

seq1  TGAAAGGCAATACTCTTTCTGCAGGAAAAGAGCTTGAACCCTCAGGGTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCAATACTCTTTCTGCAGGAAAAGAGCTTGAACCCTCAGGGTGA  484

seq1  CATTGAGTAGGCTTATGTCAGGGAATTGAGAGTAGAGAAGTTTCAGGTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGTAGGCTTATGTCAGGGAATTGAGAGTAGAGAAGTTTCAGGTGT  534

seq1  TGAGTCTGGGCTGTCTGCAGTTTTTCTGATATGCAGAGTTCCAGTGGGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGGGCTGTCTGCAGTTTTTCTGATATGCAGAGTTCCAGTGGGAG  584

seq1  CAGAACTAAGTACTTCTGAGCAAAACTATGTTTATTCCAACATATCCCAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTAAGTACTTCTGAGCAAAACTATGTTTATTCCAACATATCCCAA  634

seq1  CTCTAAAGGGATAAAAAGTTGCACTGAAGAAGTTTCAAGACAAGAAATTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAGGGATAAAAAGTTGCACTGAAGAAGTTTCAAGACAAGAAATTT  684

seq1  TATAAGATGATCTTCATTTGGAAATGGAGTTATTGTTTGGAAGATGTTCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGATGATCTTCATTTGGAAATGGAGTTATTGTTTGGAAGATGTTCC  734

seq1  AACTGAGTGGGGGCAGAGATCAACAGTTGGAGGGTAAAGGGGTTAACATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGTGGGGGCAGAGATCAACAGTTGGAGGGTAAAGGGGTTAACATG  784

seq1  ATCTGTAGAGGTTGTCCTTATGTTGGATAGTGTTAATATCCTTCTGGCCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAGAGGTTGTCCTTATGTTGGATAGTGTTAATATCCTTCTGGCCC  834

seq1  GAAGTATTCTTTGACCCTCTGAGTAATGAAAATTTGTAATCTTTGTTGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATTCTTTGACCCTCTGAGTAATGAAAATTTGTAATCTTTGTTGGA  884

seq1  GGAACTTGGTGAAGCAACTGAGAATGTAGGATCAAATAATGAAATTAGCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTGGTGAAGCAACTGAGAATGTAGGATCAAATAATGAAATTAGCA  934

seq1  ATTTCAAAGCTATTGGGTTCCTGGATGACCTGTTTCTCTGTATAACAGCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAAGCTATTGGGTTCCTGGATGACCTGTTTCTCTGTATAACAGCC  984

seq1  CTAGAGCCTCACTCTGTTGACCAGGCTGGCCTTGAACTCACAGAGATCTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCCTCACTCTGTTGACCAGGCTGGCCTTGAACTCACAGAGATCTG  1034

seq1  ACTGCATCTGCACTCTGTGTGCTGGTATTAAAGGCTTGTGCCACCACCGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATCTGCACTCTGTGTGCTGGTATTAAAGGCTTGTGCCACCACCGC  1084

seq1  CCAGCTGGATTTTTTTTTCTTTAGTCAGATCTAGCTCTCTTTCATTCTTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGGATTTTTTTTTCTTTAGTCAGATCTAGCTCTCTTTCATTCTTC  1134

seq1  AAGTGCCATAGCAACCAAAGAATTC  1172
      |||||||||||||||||||||||||
seq2  AAGTGCCATAGCAACCAAAGAATTC  1159

seq1: chr4_73584554_73585643
seq2: B6Ng01-084I20.g_70_1158

seq1  GAATTCTCCTCTCTCTAAGTTGTTTTTGTCATAGTGTTTTTGTTACAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCTCTCTAAGTTGTTTTTGTCATAGTGTTTTTGTTACAGTG  50

seq1  ACTGAAACCTAAGCAGGACAGAAATGTTGTATGATAATTCTATGCCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACCTAAGCAGGACAGAAATGTTGTATGATAATTCTATGCCCAGA  100

seq1  GAACAATTCATTTACATAACTTGACAGTGAGAATTGGTCTTATCTGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATTCATTTACATAACTTGACAGTGAGAATTGGTCTTATCTGATTT  150

seq1  GCCATTTGAAAAACCAGAAGATCACCTGTGCCAGGAAACTCAAGCTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTGAAAAACCAGAAGATCACCTGTGCCAGGAAACTCAAGCTGACA  200

seq1  AGTAAGTTAGAGCTATTTTATGTCAATAAAATTAGAGTAGAATAAAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTTAGAGCTATTTTATGTCAATAAAATTAGAGTAGAATAAAACAG  250

seq1  AATTTTTAACTTCTGAAGAATATAGCTGGCATTCAACTTTTTCCAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAACTTCTGAAGAATATAGCTGGCATTCAACTTTTTCCAATTTT  300

seq1  TTCTTGACTCTGAAAAGTTATTTTCTTAGAAGGTAAATGGTTAGAATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGACTCTGAAAAGTTATTTTCTTAGAAGGTAAATGGTTAGAATCAT  350

seq1  GGTTCTGTGGATAAGAAGAACCAATTTCAGCTGGAGAAGGTGCTGGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGTGGATAAGAAGAACCAATTTCAGCTGGAGAAGGTGCTGGAACT  400

seq1  TAAAAGAAATGTTTTGATGTGTACAATCTACAGAAGATATCTTTTAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAATGTTTTGATGTGTACAATCTACAGAAGATATCTTTTAATTC  450

seq1  TATCAAGAATAGTTTTGTAACTAAAGGTGCAAATTCGGGTTGTATGGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGAATAGTTTTGTAACTAAAGGTGCAAATTCGGGTTGTATGGTTC  500

seq1  CATCCAGCATTCTATTATAAACTGATTCATAGTTCCTTCTTTCTTTGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGCATTCTATTATAAACTGATTCATAGTTCCTTCTTTCTTTGGTG  550

seq1  GAGGCTGTGACAAGTCTTGTCTATGACAGGCCACCTTCAATGTCCAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGTGACAAGTCTTGTCTATGACAGGCCACCTTCAATGTCCAAGCC  600

seq1  TCAGCAAAGATATGCTTCTTTATCACTTCTTTGTAGTAAGACTGGAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAAGATATGCTTCTTTATCACTTCTTTGTAGTAAGACTGGAAGTT  650

seq1  TGATAACCCAAGTATTATCCACCATAAGGCCACCTTTTCAACCCAAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACCCAAGTATTATCCACCATAAGGCCACCTTTTCAACCCAAGTAT  700

seq1  ATAAAAGACACACTATCAGAAGAAGATTCATATTGGCTTTACTGAAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGACACACTATCAGAAGAAGATTCATATTGGCTTTACTGAAGGAT  750

seq1  AGGTGAATACAGGTGAAGCCTGAGGCCCAAATGATGTTTCTTTCTTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAATACAGGTGAAGCCTGAGGCCCAAATGATGTTTCTTTCTTCCTC  800

seq1  TCTGAAGTGATGACAGCTGAGCTCCTCTAGGCTCACTCATGAACTTCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTGATGACAGCTGAGCTCCTCTAGGCTCACTCATGAACTTCTCA  850

seq1  TCCCAGTCAGAGACTGAAGCTGGAATGTGGAAATCAAATCTTGGATGGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTCAGAGACTGAAGCTGGAATGTGGAAATCAAATCTTGGATGGGT  900

seq1  CCGACATATGCAGGTCCTACTGACTCTGGCTATGGCATAGAGACTGGAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACATATGCAGGTCCTACTGACTCTGGCTATGGCATAGAGACTGGAAC  950

seq1  TTCAAAAGCAGGTCCAAGATAGACAGGGAAAGAGAGAAGAAGCAGAAAAA  1000
      ||| |||||||||||| ||||||||||| |||||||||| ||||| ||||
seq2  TTC-AAAGCAGGTCCAGGATAGACAGGGTAAGAGAGAAG-AGCAG-AAAA  997

seq1  TAAGTAAGCAGAGTCCTTCAGTAAG-TATCTTCCCAAAGTTGAGAAAATT  1049
      | ||||||||||||||||||||||| ||||||||||||||||  ||||||
seq2  TTAGTAAGCAGAGTCCTTCAGTAAGTTATCTTCCCAAAGTTGGAAAAATT  1047

seq1  TTACCCAAAGATG-CTCAAGTCCCATCAGCT-GCAACAACCCC  1090
      |||||| |||||| ||||  |||  |||||| |||||||||||
seq2  TTACCC-AAGATGCCTCAGTTCCATTCAGCTGGCAACAACCCC  1089