BAC Information

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BAC

Clone NameB6Ng01-084J13
Chromosome4 (Build37)
Map Location 107,352,607 - 107,497,359
singlet/doubletdoublet
Overlap geneDmrtb1, LOC100039889, LOC433743, 4933424M12Rik
Upstream geneGm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1
Downstream gene4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084J13.bB6Ng01-084J13.g
ACCDH898507DH898508
length1,1671,025
definitionDH898507|Mus musculus domesticus DNA, BAC clone: B6Ng01-084J13, 5' end.DH898508|Mus musculus domesticus DNA, BAC clone: B6Ng01-084J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,352,607 - 107,353,789)(107,496,331 - 107,497,359)
sequence
gaattccaagctcccagacaagtctctccttagaacaaagctcctgcctg
ggccagtatggcagctcagtcccaaacatgggcctgagtcgcacctttca
caaaggtgtctggtagacctgtcattcagaaccctgccgtgcatgtcaag
tccagacttctgggtaaacagacggtgtgctgcaggctgcccttggtcac
agcctctctttgtctgggggccagtggcacctgctctcctggactgtggt
agcggccgacgggaacagccacatctttcaggctggcatggaagtcaaga
gctaggtttgctgtacctcggggacacacttgagatagcagagcatgcct
gggcttgaggcagggcatctctgactccataccaatcagccaagtgtgct
gcatcccaggcctcattcacagtcctgtggcattggggctcggcagcagg
aaggcgtctctggcagctgcattgcacgggttaagactacagtcgcccct
gggctccaagtctgaagagcagacaccacaccccgggcccattccccctt
atgacaaccagctctctgggactgagggccagggaaagtgataagagcgg
ctggggtaagaacaggcttagacaggagtcaggctccaacttaccaagcc
gcttctatggtaggggctgcaggagacatgccggaagcctctttgttgag
ggacccccagagcagaggatgaatcctggccttccgaaagtggaaaggac
tggtagggtgaaacagggacgcaggcagggcactgcttgaacggctctct
ctcagattcccagctcctaccacatgatcagacttgaatctcagaggatg
ccctaagaagataaacagagaggggaagtgttaagaacacaaacctgagg
ggtgaatgcattgctgtctcccgggcaacagagagattgacacaaccgac
taaagcagtctctagtcagacatcccactgggctctttatactcttatac
atacacagatatgtatctggtcacatccacacacgagccctctcatccct
cttcttgtcactgatcctttctgccatttgtctctttcgctacatctctt
tggtaatgattgtgaacagtagattagctaggctactttcaggaaatggg
tgccacccaactgaata
gaattcatctctcagtccctcggtttcctgacctagaacacagggctaac
attttggggcgaagcgactttgaggcaccatcaatgccttccttctggga
ctccagggagggctgggcagccttccttctggaatggctgagggctcaga
tggacaggagacatgtgtggctcaggtcccatgaagtgctagacagagac
caggccacgcagggcacgacaggcaggcaggacaaacctggaacttgggc
cttggaggcaacctggctcagtcctcaactttatgaacggagagacgatg
ccagagaagctggggccaacctgaggtgacatttctaaggtaagcttagc
aaagcaattcctccctcacaggacccaacacgacagaactaagagcagct
gaagagatcaggcaagagcactgggaggtggctcggctgataaagcgcct
gctgcgtaagcagaacggcctgattctgctcccctagaacacatattaaa
aaaacaagccacgtataaccctaggagggtaagggaagacaatagaaccc
aagagcttactggccagccagcctagccaaatgtatttaacattcaatga
tagaccctgtgtaagcacagtatgcatgtatgtatgtatgtatgtatgta
tgtatgtatctataatccatccatttatccatccatccatctatctttct
atctatctcagaatcaaaaaggagccacagaaccacagatttcaactctc
catgttccaaaataacatttttagagtctcaaaaccccaagctagactgc
tcagccctctgggtcagaacgtgggacactcggccttcaaagactctcac
aagcaagctgcagaagcccagaaactctcgtcatggatctaacccaggtg
ccaggagcagtaggcatggtcaccctcccccatcgcaagcctaggaatcc
cgttcccacgcatgacatatgtcagtctgcgcaggcagaaggctgaaagt
tgttccttctgaacagggaggaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_107352607_107353789
seq2: B6Ng01-084J13.b_43_1209

seq1  GAATTCCAAGCTCCCAGACAAGTCTCTCCTTAGAACAAAGCTCCTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCTCCCAGACAAGTCTCTCCTTAGAACAAAGCTCCTGCCTG  50

seq1  GGCCAGTATGGCAGCTCAGTCCCAAACATGGGCCTGAGTCGCACCTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTATGGCAGCTCAGTCCCAAACATGGGCCTGAGTCGCACCTTTCA  100

seq1  CAAAGGTGTCTGGTAGACCTGTCATTCAGAACCCTGCCGTGCATGTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTGTCTGGTAGACCTGTCATTCAGAACCCTGCCGTGCATGTCAAG  150

seq1  TCCAGACTTCTGGGTAAACAGACGGTGTGCTGCAGGCTGCCCTTGGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACTTCTGGGTAAACAGACGGTGTGCTGCAGGCTGCCCTTGGTCAC  200

seq1  AGCCTCTCTTTGTCTGGGGGCCAGTGGCACCTGCTCTCCTGGACTGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTCTTTGTCTGGGGGCCAGTGGCACCTGCTCTCCTGGACTGTGGT  250

seq1  AGCGGCCGACGGGAACAGCCACATCTTTCAGGCTGGCATGGAAGTCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCCGACGGGAACAGCCACATCTTTCAGGCTGGCATGGAAGTCAAGA  300

seq1  GCTAGGTTTGCTGTACCTCGGGGACACACTTGAGATAGCAGAGCATGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGTTTGCTGTACCTCGGGGACACACTTGAGATAGCAGAGCATGCCT  350

seq1  GGGCTTGAGGCAGGGCATCTCTGACTCCATACCAATCAGCCAAGTGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGAGGCAGGGCATCTCTGACTCCATACCAATCAGCCAAGTGTGCT  400

seq1  GCATCCCAGGCCTCATTCACAGTCCTGTGGCATTGGGGCTCGGCAGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCAGGCCTCATTCACAGTCCTGTGGCATTGGGGCTCGGCAGCAGG  450

seq1  AAGGCGTCTCTGGCAGCTGCATTGCACGGGTTAAGACTACAGTCGCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGTCTCTGGCAGCTGCATTGCACGGGTTAAGACTACAGTCGCCCCT  500

seq1  GGGCTCCAAGTCTGAAGAGCAGACACCACACCCCGGGCCCATTCCCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCAAGTCTGAAGAGCAGACACCACACCCCGGGCCCATTCCCCCTT  550

seq1  ATGACAACCAGCTCTCTGGGACTGAGGGCCAGGGAAAGTGATAAGAGCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAACCAGCTCTCTGGGACTGAGGGCCAGGGAAAGTGATAAGAGCGG  600

seq1  CTGGGGTAAGAACAGGCTTAGACAGGAGTCAGGCTCCAACTTACCAAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTAAGAACAGGCTTAGACAGGAGTCAGGCTCCAACTTACCAAGCC  650

seq1  GCTTCTATGGTAGGGGCTGCAGGAGACATGCCGGAAGCCTCTTTGTTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTATGGTAGGGGCTGCAGGAGACATGCCGGAAGCCTCTTTGTTGAG  700

seq1  GGACCCCCAGAGCAGAGGATGAATCCTGGCCTTCCGAAAGTGGAAAGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCCCAGAGCAGAGGATGAATCCTGGCCTTCCGAAAGTGGAAAGGAC  750

seq1  TGGTAGGGTGAAACAGGGACGCAGGCAGGGCACTGCTTGAACGGCTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGGTGAAACAGGGACGCAGGCAGGGCACTGCTTGAACGGCTCTCT  800

seq1  CTCAGGATTCCCAGCTCCTACCACATGATCAGACTTGAATCTCAGAGGAT  850
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCA-GATTCCCAGCTCCTACCACATGATCAGACTTGAATCTCAGAGGAT  849

seq1  GCCCTAAGAAGATAAACAGAGAGGGGAAGTGTTAAGAACACAAACCTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAAGAAGATAAACAGAGAGGGGAAGTGTTAAGAACACAAACCTGAG  899

seq1  GGGTGAATGCATTGCTGTCTCCCGGGCAACAGAGAGATTGACACAACCGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAATGCATTGCTGTCTCCCGGGCAACAGAGAGATTGACACAACCGA  949

seq1  CTAAAGCAGTCTCTAGTCAGACATCCCACTGGGCTTCTTTATACTCTTAT  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTAAAGCAGTCTCTAGTCAGACATCCCACTGGGC-TCTTTATACTCTTAT  998

seq1  ACATACACAGATAATGTATTCTGGTCACATCCACAACACGAGCCCTCTCA  1050
      |||||||||||| ||||| ||||||||||||||| |||||||||||||||
seq2  ACATACACAGAT-ATGTA-TCTGGTCACATCCAC-ACACGAGCCCTCTCA  1045

seq1  TCCCCTCTCCTTGTCACTGATCCTTTCTGCCATTTGTCCTCTTTCTGCCT  1100
      | |||||| |||||||||||||||||||||||||||| ||||||| ||  
seq2  T-CCCTCTTCTTGTCACTGATCCTTTCTGCCATTTGT-CTCTTTC-GC--  1090

seq1  TAACATCTCTTTGGGTATGTATGTGAACCAGTAAGATTAGCTAAGGCTAC  1150
        ||||||||||||  |||  |||||| |||| ||||||||| |||||||
seq2  -TACATCTCTTTGGTAATGATTGTGAA-CAGT-AGATTAGCT-AGGCTAC  1136

seq1  TTTCAGGAACATGGGTGGCCACACCACTGAATA  1183
      ||||||||| |||||| ||||| | ||||||||
seq2  TTTCAGGAA-ATGGGT-GCCACCCAACTGAATA  1167

seq1: chr4_107496331_107497359
seq2: B6Ng01-084J13.g_70_1094 (reverse)

seq1  ACTTCCCTCCCTGTTCAGAAGGGACAGCTTTCAGCCTCTTGCCTGCGCAG  50
      |||| ||||||||||||||||| ||| ||||||||||  |||||||||||
seq2  ACTT-CCTCCCTGTTCAGAAGGAACAACTTTCAGCCTTCTGCCTGCGCAG  49

seq1  ACTGGCCATATGTCAGCGGTGGGAACGGGATTCCTGGGCCTGCGGTGGGG  100
      ||| | |||||||||   ||||||||||||||||| ||| |||| |||||
seq2  ACT-GACATATGTCATGCGTGGGAACGGGATTCCTAGGCTTGCGATGGGG  98

seq1  GAGGGGTGGCCATGCCTACTGCTCCTGGCACCTGGGTTAGATCCCATGAC  150
      || ||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  GA-GGGTGACCATGCCTACTGCTCCTGGCACCTGGGTTAGAT-CCATGAC  146

seq1  GAGAGTTTCTGGGCTTCTGCAGCTTGCTTGTGAGAGTCTTTGATGGCCGA  200
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAGAGTTTCTGGGCTTCTGCAGCTTGCTTGTGAGAGTCTTTGAAGGCCGA  196

seq1  GTGTCCCACGTTCTGACCCAGAGGGCCTGAGCAGTCTAGCTTGGGGTTTT  250
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGTCCCACGTTCTGACCCAGAGGG-CTGAGCAGTCTAGCTTGGGGTTTT  245

seq1  GAGACTCTAAAATGTTTATTTTGGAACATGGAGAGTTG-AATCTGTGGTT  299
      ||||||||||||   ||||||||||||||||||||||| |||||||||||
seq2  GAGACTCTAAAAATGTTATTTTGGAACATGGAGAGTTGAAATCTGTGGTT  295

seq1  CTGTGGCTCCTTTTTGATTCTGAGATAGATAGAAAGATAGATGGATGGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTCCTTTTTGATTCTGAGATAGATAGAAAGATAGATGGATGGAT  345

seq1  GGATAAATGGATGGATTATAGATACATACATACATACATACATACATACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAATGGATGGATTATAGATACATACATACATACATACATACATACA  395

seq1  TACATGCATACTGTGCTTACACAGGGTCTATCATTGAATGTTAAATACAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCATACTGTGCTTACACAGGGTCTATCATTGAATGTTAAATACAT  445

seq1  TTGGCTAGGCTGGCTGGCCAGTAAGCTCTTGGGTTCTATTGTCTTCCCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTAGGCTGGCTGGCCAGTAAGCTCTTGGGTTCTATTGTCTTCCCTT  495

seq1  ACCCTCCTAGGGTTATACGTGGCTTGTTTTTTTAATATGTGTTCTAGGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCTAGGGTTATACGTGGCTTGTTTTTTTAATATGTGTTCTAGGGG  545

seq1  AGCAGAATCAGGCCGTTCTGCTTACGCAGCAGGCGCTTTATCAGCCGAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAATCAGGCCGTTCTGCTTACGCAGCAGGCGCTTTATCAGCCGAGC  595

seq1  CACCTCCCAGTGCTCTTGCCTGATCTCTTCAGCTGCTCTTAGTTCTGTCG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCCAGTGCTCTTGCCTGATCTCTTCAGCTGCTCTTAGTTCTGTCG  645

seq1  TGTTGGGTCCTGTGAGGGAGGAATTGCTTTGCTAAGCTTACCTTAGAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGTCCTGTGAGGGAGGAATTGCTTTGCTAAGCTTACCTTAGAAAT  695

seq1  GTCACCTCAGGTTGGCCCCAGCTTCTCTGGCATCGTCTCTCCGTTCATAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTCAGGTTGGCCCCAGCTTCTCTGGCATCGTCTCTCCGTTCATAA  745

seq1  AGTTGAGGACTGAGCCAGGTTGCCTCCAAGGCCCAAGTTCCAGGTTTGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGGACTGAGCCAGGTTGCCTCCAAGGCCCAAGTTCCAGGTTTGTC  795

seq1  CTGCCTGCCTGTCGTGCCCTGCGTGGCCTGGTCTCTGTCTAGCACTTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCCTGTCGTGCCCTGCGTGGCCTGGTCTCTGTCTAGCACTTCAT  845

seq1  GGGACCTGAGCCACACATGTCTCCTGTCCATCTGAGCCCTCAGCCATTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTGAGCCACACATGTCTCCTGTCCATCTGAGCCCTCAGCCATTCC  895

seq1  AGAAGGAAGGCTGCCCAGCCCTCCCTGGAGTCCCAGAAGGAAGGCATTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAGGCTGCCCAGCCCTCCCTGGAGTCCCAGAAGGAAGGCATTGA  945

seq1  TGGTGCCTCAAAGTCGCTTCGCCCCAAAATGTTAGCCCTGTGTTCTAGGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCTCAAAGTCGCTTCGCCCCAAAATGTTAGCCCTGTGTTCTAGGT  995

seq1  CAGGAAACCGAGGGACTGAGAGATGAATTC  1029
      ||||||||||||||||||||||||||||||
seq2  CAGGAAACCGAGGGACTGAGAGATGAATTC  1025