BAC Information

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BAC

Clone NameB6Ng01-085A21
Chromosome14 (Build37)4 (Build37)
Map Location 40,434,261 - 40,435,27225,831,996 - 25,832,357
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNrg3
Downstream geneLOC100040439, LOC218945, LOC100040470, LOC382876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085A21.bB6Ng01-085A21.g
ACCDH898832DH898833
length1,006962
definitionDH898832|Mus musculus domesticus DNA, BAC clone: B6Ng01-085A21, 5' end.DH898833|Mus musculus domesticus DNA, BAC clone: B6Ng01-085A21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,434,261 - 40,435,272)(25,831,996 - 25,832,357)
sequence
gaattcagaaagagaccaggacataagataggcctctaggaaaattgctg
gtgacacattttctccaactagacagctgttgtggatagccctggggcta
attatatttgctgttatttccattctcctgaacaagtcagcattcaggtg
atttcctgtaaccctgtttcccaccttgatttataaaataaaagagagct
gatgattgggcagaaaaaagggaaggtagagcagaaggagggagagagaa
gaaggagaaaatggaaaagggagaggacacagaggaggaggggaagaaga
agaaaaccagagcagaagcacatggcctggagaacccacaagttctaagg
gttcttatagatgtggaagatggtagtgtagcagtagatctgcccaatct
aggcacacagcatgtattcatgttaactgagttgtgttttcattgctggg
ccatatttgggttggagatttactgcaacatacacaagcttctacctctc
agcatctctataatgcttgcatttttatgagccaaagcattaattcattg
attagatccaagccctcgtgatcgaaatctctctgggtactcagtcatag
acagagacacagacacaggtgcacaagcaaatgcacacgcacatagatac
acacgcagaaatttatctctgtaattttctagtgatgtcttaaaccagta
aagtctttgctagatgttctggtacagagcttaaaatcagaagacagaat
gaaagccatacattctcagtcccatcctcattccccttaactatttcagt
gaagtcgaggctgcccttgctctcatctttttgagttttgataacataaa
aaccccagatgttttggttgtaagttgaaatgaatctacctgtttctctt
aaatcaaaaaaactgcagaactaaaattgaccaatgagtgattccctgat
tcaaatctgaagcaatgtggcccaagttgtgagtattcaactatgggatt
cttttc
gaattctcatctcttatttatttgtttttattacatactcatcaatacat
aaaacaacctgcccagtctgtatgttgtcattgttgttcttgttttttgg
aaaggtggttgataagcagcaaggactcatttgaataagaaagggaatat
gggtggagcccagcacacattccctgtccactgcccagttagttactcct
gtagctgactcacaaagtattttgtgtggagctgcagacttgaggatgat
gaatgaagctcaacagtggggcttctatacagcctcactcagactacatg
aaaaagcatacccaaaggctaccctgctttcatactagaatgagagcatc
agtctgtagacattaatttagggatgaaatccttatctgttcctgttcta
gatcacaaaaaattgatacaaagacctactaagtttattaacaaatagag
cttacatttcaaatgttatcccctttaccagtttccccctctgcaaacca
cctattccattcccccttaccctgcttctatgagggtgctccctccagcc
cccagccaactcctgcctcactgccctagcattcctctacagtgggacat
caagccttcacaggaccaagcgtcccctcccattgatgccagataaagcc
cccttagctccttcagtccttcccctaacccctctattagggtccctgtg
ctcattccaatgatctgcatttgtattggtcaagatctgatagggcctct
caggagacagctgcctcaggctcctgtcatcaagcacttcttggcatcca
caatagtggctgggtttggtatctgcatgtgggatggatttcccaggtgg
gcagtctctggatggcctttccttcagtctctgctccattctttgtctct
gtatttcctttaaacaggagcaattctgggtttaaatttggtgatggggt
ggggtgctccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_40434261_40435272
seq2: B6Ng01-085A21.b_49_1054

seq1  GAATTCAGAAAGAGACCAGGACATAAGATAGGCCTCTAGGAAAATTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGAGACCAGGACATAAGATAGGCCTCTAGGAAAATTGCTG  50

seq1  GTGACACATTTTCTCCAACTAGACAGCTGTTGTGGATAGCCCTGGGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACATTTTCTCCAACTAGACAGCTGTTGTGGATAGCCCTGGGGCTA  100

seq1  ATTATATTTGCTGTTATTTCCATTCTCCTGAACAAGTCAGCATTCAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTTGCTGTTATTTCCATTCTCCTGAACAAGTCAGCATTCAGGTG  150

seq1  ATTTCCTGTAACCCTGTTTCCCACCTTGATTTATAAAATAAAAGAGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTGTAACCCTGTTTCCCACCTTGATTTATAAAATAAAAGAGAGCT  200

seq1  GATGATTGGGCAGAAAAAAGGGAAGGTAGAGCAGAAGGAGGGAGAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTGGGCAGAAAAAAGGGAAGGTAGAGCAGAAGGAGGGAGAGAGAA  250

seq1  GAAGGAGAAAATGGAAAAGGGAGAGGACACAGAGGAGGAGGGGAAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGAAAATGGAAAAGGGAGAGGACACAGAGGAGGAGGGGAAGAAGA  300

seq1  AGAAAACCAGAGCAGAAGCACATGGCCTGGAGAACCCACAAGTTCTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCAGAGCAGAAGCACATGGCCTGGAGAACCCACAAGTTCTAAGG  350

seq1  GTTCTTATAGATGTGGAAGATGGTAGTGTAGCAGTAGATCTGCCCAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTATAGATGTGGAAGATGGTAGTGTAGCAGTAGATCTGCCCAATCT  400

seq1  AGGCACACAGCATGTATTCATGTTAACTGAGTTGTGTTTTCATTGCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACACAGCATGTATTCATGTTAACTGAGTTGTGTTTTCATTGCTGGG  450

seq1  CCATATTTGGGTTGGAGATTTACTGCAACATACACAAGCTTCTACCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTGGGTTGGAGATTTACTGCAACATACACAAGCTTCTACCTCTC  500

seq1  AGCATCTCTATAATGCTTGCATTTTTATGAGCCAAAGCATTAATTCATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTCTATAATGCTTGCATTTTTATGAGCCAAAGCATTAATTCATTG  550

seq1  ATTAGATCCAAGCCCTCGTGATCGAAATCTCTCTGGGTACTCAGTCATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATCCAAGCCCTCGTGATCGAAATCTCTCTGGGTACTCAGTCATAG  600

seq1  ACAGAGACACAGACACAGGTGCACAAGCAAATGCACACGCACATAGATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACACAGACACAGGTGCACAAGCAAATGCACACGCACATAGATAC  650

seq1  ACACGCAGAAATTTATCTCTGTAATTTTCTAGTGATGTCTTAAACCAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCAGAAATTTATCTCTGTAATTTTCTAGTGATGTCTTAAACCAGTA  700

seq1  AAGTCTTTGCTAGATGTTCTGGTACAGAGCTTAAAATCAGAAGACAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTGCTAGATGTTCTGGTACAGAGCTTAAAATCAGAAGACAGAAT  750

seq1  GAAAGCCATACATTCTCAGTCCCATCCTCATTCCCCTTAACTATTTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCATACATTCTCAGTCCCATCCTCATTCCCCTTAACTATTTCAGT  800

seq1  GAAGTCGAGGCTG-CCTTGCTCTCATCTTTTTGAGTTTTGATAACATAAA  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAAGTCGAGGCTGCCCTTGCTCTCATCTTTTTGAGTTTTGATAACATAAA  850

seq1  AACCCCAGATGTTTTGGTTGTAAGTTGAAATGAATTCTACCTGTTTCTCT  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AACCCCAGATGTTTTGGTTGTAAGTTGAAATGAA-TCTACCTGTTTCTCT  899

seq1  TAAAATCAAAAAAACAGCAGAACTAAAATTGAACAAATGAGTGATTCCCT  949
      | ||||||||||||| ||||||||||||||| || |||||||||||||||
seq2  T-AAATCAAAAAAACTGCAGAACTAAAATTG-ACCAATGAGTGATTCCCT  947

seq1  GATTCAAAATCTGAAGGCAATTGTGGCCTAAGTTGTGAGTTAATCAACTT  999
      ||||| ||||||||| |||| ||||||| |||||||||| || |||||| 
seq2  GATTC-AAATCTGAA-GCAA-TGTGGCCCAAGTTGTGAG-TATTCAACTA  993

seq1  AGGGATTCTTTTC  1012
       ||||||||||||
seq2  TGGGATTCTTTTC  1006

seq1: chr4_25831996_25832357
seq2: B6Ng01-085A21.g_518_828 (reverse)

seq1  AGCTGTCTCCTGAGAGAC---ATCAGCTGAAGAAAGGATCCAAGGAACTG  47
      |||||||||||||||| |   ||||| |   ||      ||||   |   
seq2  AGCTGTCTCCTGAGAGGCCCTATCAGATCTTGA------CCAATACA---  41

seq1  AAGGGGTTTGCAGCCCCATAGGAGGAACAACAATATGAACCAACCAGTAC  97
      ||      |||||   ||| |||           |||| |  ||  | ||
seq2  AA------TGCAG-ATCATTGGA-----------ATGAGC--ACAGGGAC  71

seq1  CCCATAGCTCCCAGGAACTAAACGATCAATCAAAGAGTACACATGGTGTG  147
      ||                           | | ||||       |||  |
seq2  CC---------------------------TAATAGAG------GGGTTAG  88

seq1  GCTCATGGCTTCAGCTGCATATGTAGCAGAGGATGGCCTTGTCAGTCATC  197
      |   | | ||          | | |||  |||  ||| || || | ||||
seq2  GGGAAGGACT---------GAAGGAGCTAAGG-GGGCTTTATCTGGCATC  128

seq1  AATGGGAGGAGAAGCCTTTGGTCCTGTGAAGGCTCTATGCCCCAGTGTAC  247
      ||||||||| || ||  |||||||||||||||||  ||| |||| |||| 
seq2  AATGGGAGGGGACGC--TTGGTCCTGTGAAGGCTTGATGTCCCACTGTAG  176

seq1  AGAAATGCCAGGGCCAGGAAGG--GGAG-----TGGGTGGTTGGGGG---  287
      || ||||| |||| |||  |||  ||||     |||| | | | |||   
seq2  AGGAATGCTAGGG-CAGTGAGGCAGGAGTTGGCTGGGGGCTGGAGGGAGC  225

seq1  -----------AGCAGGGGAAGGGGGAGAGG-ATAGGGGATCTTTTGGAG  325
                 ||||||| ||||||||  || ||||| | | |   |  |
seq2  ACCCTCATAGAAGCAGGGTAAGGGGGAATGGAATAGGTGGTTTGCAGAGG  275

seq1  GTGAAATTAGGAAAGGGGAATAACATTTGAAATGTAA  362
      | |||| | | ||||||| ||||||||||||||||||
seq2  GGGAAACTGGTAAAGGGG-ATAACATTTGAAATGTAA  311