BAC Information

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BAC

Clone NameB6Ng01-085G01
Chromosome4 (Build37)
Map Location 74,019,692 - 74,051,516
singlet/doubletdoublet
Overlap geneJmjd2c
Upstream geneOTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774
Downstream geneLOC100040258, LOC100039814, LOC636847, 3110001D03Rik, LOC623529, LOC100039833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085G01.bB6Ng01-085G01.g
ACCDH899066DH899067
length1,1311,151
definitionDH899066|Mus musculus domesticus DNA, BAC clone: B6Ng01-085G01, 5' end.DH899067|Mus musculus domesticus DNA, BAC clone: B6Ng01-085G01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,050,366 - 74,051,516)(74,019,692 - 74,020,839)
sequence
gaattcctcttcaagagcaaaaaatttcctcttataaaggccaactcagt
tttcagacacaatcaaaagtaataatataaaaaatggaaaagttctgtac
aagggaagatagcatacaggtaaatcctattaccatacatgccatttgtg
ttttaaaaatgttttataaaaactgccactgaaaacaaatgtgagtgaga
ctctttccctggctgtggaaaatatatataaatacacccaccggctgttg
ggtgatgaggctgccactgaaggaggtgggaaaggagcctccaaatgtgt
tccctgaggaagggacctgagccagagagggaaccccgcttctttagcag
ttgttttatctagtgggccattcactgctgtttcctttaatttaggaata
ttctttggggtcaaacaaatgactgaggggtgatcagattacagaagcaa
ctaatatgtctcttcttggttgcttggtaatcaaactccagaagcctggt
ttattaccaataccaaagaagcacccagccacctgtcccaatgtgtaccc
caaggctgtccctttgtcttccctcttctggtctgagctgcactgtggct
gctgcacattatcaactactgtctcttctgacacttcttctggaaagaac
tcttcaggaaagtacgatacacagggtcatccacatactcattcttgagc
ctggagcttagcactctttgcctcttcctctccccttggattacatctgc
tccataaaatgtgtcttcaaatcgcatgtcggaggctgtggactaaacgc
agaaatacattattgagtgtataaatgagaaatatattactgaaacacta
catacagatctagggaacagaggctaggatctatcacagggtcgaaggaa
cctaccacagtgtcttacagtgtcttcatcatcagtaggtctcacctata
ccacatgcagagatatgtggctctatttggtcccacttcttatcctgctg
agagcttcccaaacaaagcaaaataaagtctctcatatgagtctgctgta
atgaaacttctaaaagaagctatggtttatagaaatgattgacttataga
ttgagaaagaattgtggtggaataaatgatc
gaattctttctgggacctgtcacaggtctctaataccttgtgagtgttga
catgtccagactgtagtataattaagactcggaattgagaactattattt
aaacatagttgctcagaaccattcagtttcggctatgcattaaacacagt
atttatagtaagttgaatgagtgaatgtatacaaaaatgagtcaaactct
taggatccattctttttttggatctgtgtacagatatctgaatagttgta
tatagattgtgctgttcatgtgttcagcatgtcagaagataatttcaagt
agaacaacgtgaaaagagctcctaaaatctgcaatgcattctgtgtgcaa
tgatacacatttatttaaatctttcctgaaagaaagaaatagcaacaacg
ttgtaaaaggaaaatggccaggaacttttgcttctttctacctaacacag
gataagtgagctctaacatgaaggccctggaagatcagtggaatatgact
atgaaagtgtataacttttaacgtgaggagaatatattagcatagattat
agaaaggaaaaatagtttgccccccttcattcatattacttaagactgaa
attcctctaagaaaatagaatttgtacgcagataacttgagtttaaactg
taatttgcttaatttttccttggttaatgaaaccattcccttgacttaaa
agcttaaaaggattagggcaatatagagatttgtatccttacaagctctt
cctgtctctattaatattaataatatttttctcctctactcttttttttt
ttaaattattatatgtaagttcattgtagttgtcttcaaacacaccagaa
gagggcgtcagatctcattatggatggttgtgagccaccatgtggttgct
gggatttgaactcaggaccttcgggaataccaagtcagtgctcttaactc
ctggagccatctcacccagccctactcttttttttttttggtttgttttg
ttttggttttaatggaatgacttctatttatttgacaccttcacacatgt
aaaacatattctttggtctaatgaatccactattgatctttatggacagt
gcaatggtccatgtatggaaacttgtagaaaattcttatctgcagcaacc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_74050366_74051516
seq2: B6Ng01-085G01.b_47_1177 (reverse)

seq1  GATCATTTTAATCTCACCACAATACTTTCTCAAAATCTAATTAGTCAATC  50
      ||||||||  ||  ||||||||| |||||||  ||||| || ||||||||
seq2  GATCATTT--ATTCCACCACAATTCTTTCTC--AATCT-ATAAGTCAATC  45

seq1  AATTTCTATAGA-CATAGCTTCTTTTTAGGAGTTTTCATTTACAGCAGAC  99
       ||||||||| | ||||||||| |||||| || ||||| |||||||||||
seq2  -ATTTCTATAAACCATAGCTTC-TTTTAGAAG-TTTCA-TTACAGCAGAC  91

seq1  TCAATATGAGAAGACTTTAATTTTGCTTTTGTTTGGGGAAGCTTCCTCAG  149
      || ||||||| ||||||| ||||||| ||||||| ||||||||  |||| 
seq2  TC-ATATGAG-AGACTTT-ATTTTGC-TTTGTTT-GGGAAGCT--CTCA-  133

seq1  GCAGGATAAAGAAATTGGGACCAAATAGAGCCACATATCTCTGCCATGTG  199
      |||||||||   || |||||||||||||||||||||||||||| ||||||
seq2  GCAGGATAA--GAAGTGGGACCAAATAGAGCCACATATCTCTG-CATGTG  180

seq1  GTATAGGTGAGACCTACCTGATGATGAAGACACTGTAAGACACTGTGGTA  249
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTATAGGTGAGACCTA-CTGATGATGAAGACACTGTAAGACACTGTGGTA  229

seq1  GGTTCCTTCGACCCTGTGATAGATCCTAGCCTCTGTTCCCTAGATCTGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTTCGACCCTGTGATAGATCCTAGCCTCTGTTCCCTAGATCTGTA  279

seq1  TGTAGTGTTTCAGTAATATATTTCTCATTTATACACTCAATAATGTATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGTTTCAGTAATATATTTCTCATTTATACACTCAATAATGTATTT  329

seq1  CTGCGTTTAGTCCACAGCCTCCGACATGCGATTTGAAGACACATTTTATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTTTAGTCCACAGCCTCCGACATGCGATTTGAAGACACATTTTATG  379

seq1  GAGCAGATGTAATCCAAGGGGAGAGGAAGAGGCAAAGAGTGCTAAGCTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGATGTAATCCAAGGGGAGAGGAAGAGGCAAAGAGTGCTAAGCTCC  429

seq1  AGGCTCAAGAATGAGTATGTGGATGACCCTGTGTATCGTACTTTCCTGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAAGAATGAGTATGTGGATGACCCTGTGTATCGTACTTTCCTGAA  479

seq1  GAGTTCTTTCCAGAAGAAGTGTCAGAAGAGACAGTAGTTGATAATGTGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTTTCCAGAAGAAGTGTCAGAAGAGACAGTAGTTGATAATGTGCA  529

seq1  GCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCT  579

seq1  TGGGGTACACATTGGGACAGGTGGCTGGGTGCTTCTTTGGTATTGGTAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTACACATTGGGACAGGTGGCTGGGTGCTTCTTTGGTATTGGTAAT  629

seq1  AAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATT  679

seq1  AGTTGCTTCTGTAATCTGATCACCCCTCAGTCATTTGTTTGACCCCAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTTCTGTAATCTGATCACCCCTCAGTCATTTGTTTGACCCCAAAG  729

seq1  AATATTCCTAAATTAAAGGAAACAGCAGTGAATGGCCCACTAGATAAAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCCTAAATTAAAGGAAACAGCAGTGAATGGCCCACTAGATAAAAC  779

seq1  AACTGCTAAAGAAGCGGGGTTCCCTCTCTGGCTCAGGTCCCTTCCTCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTAAAGAAGCGGGGTTCCCTCTCTGGCTCAGGTCCCTTCCTCAGG  829

seq1  GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCA  879

seq1  CCCAACAGCCGGTGGGTGTATTTATATATATTTTCCACAGCCAGGGAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAGCCGGTGGGTGTATTTATATATATTTTCCACAGCCAGGGAAAG  929

seq1  AGTCTCACTCACATTTGTTTTCAGTGGCAGTTTTTATAAAACATTTTTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCACTCACATTTGTTTTCAGTGGCAGTTTTTATAAAACATTTTTAA  979

seq1  AACACAAATGGCATGTATGGTAATAGGATTTACCTGTATGCTATCTTCCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAATGGCATGTATGGTAATAGGATTTACCTGTATGCTATCTTCCC  1029

seq1  TTGTACAGAACTTTTCCATTTTTTATATTATTACTTTTGATTGTGTCTGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAGAACTTTTCCATTTTTTATATTATTACTTTTGATTGTGTCTGA  1079

seq1  AAACTGAGTTGGCCTTTATAAGAGGAAATTTTTTGCTCTTGAAGAGGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGTTGGCCTTTATAAGAGGAAATTTTTTGCTCTTGAAGAGGAAT  1129

seq1  TC  1151
      ||
seq2  TC  1131

seq1: chr4_74019692_74020839
seq2: B6Ng01-085G01.g_68_1218

seq1  GAATTCTTTCTGGGACCTGTCACAGGTCTCTAATACCTTGTGAGTGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGGGACCTGTCACAGGTCTCTAATACCTTGTGAGTGTTGA  50

seq1  CATGTCCAGACTGTAGTATAATTAAGACTCGGAATTGAGAACTATTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCAGACTGTAGTATAATTAAGACTCGGAATTGAGAACTATTATTT  100

seq1  AAACATAGTTGCTCAGAACCATTCAGTTTCGGCTATGCATTAAACACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAGTTGCTCAGAACCATTCAGTTTCGGCTATGCATTAAACACAGT  150

seq1  ATTTATAGTAAGTTGAATGAGTGAATGTATACAAAAATGAGTCAAACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGTAAGTTGAATGAGTGAATGTATACAAAAATGAGTCAAACTCT  200

seq1  TAGGATCCATTCTTTTTTTGGATCTGTGTACAGATATCTGAATAGTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCCATTCTTTTTTTGGATCTGTGTACAGATATCTGAATAGTTGTA  250

seq1  TATAGATTGTGCTGTTCATGTGTTCAGCATGTCAGAAGATAATTTCAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATTGTGCTGTTCATGTGTTCAGCATGTCAGAAGATAATTTCAAGT  300

seq1  AGAACAACGTGAAAAGAGCTCCTAAAATCTGCAATGCATTCTGTGTGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAACGTGAAAAGAGCTCCTAAAATCTGCAATGCATTCTGTGTGCAA  350

seq1  TGATACACATTTATTTAAATCTTTCCTGAAAGAAAGAAATAGCAACAACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACACATTTATTTAAATCTTTCCTGAAAGAAAGAAATAGCAACAACG  400

seq1  TTGTAAAAGGAAAATGGCCAGGAACTTTTGCTTCTTTCTACCTAACACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAAGGAAAATGGCCAGGAACTTTTGCTTCTTTCTACCTAACACAG  450

seq1  GATAAGTGAGCTCTAACATGAAGGCCCTGGAAGATCAGTGGAATATGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTGAGCTCTAACATGAAGGCCCTGGAAGATCAGTGGAATATGACT  500

seq1  ATGAAAGTGTATAACTTTTAACGTGAGGAGAATATATTAGCATAGATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGTGTATAACTTTTAACGTGAGGAGAATATATTAGCATAGATTAT  550

seq1  AGAAAGGAAAAATAGTTTGCCCCCCTTCATTCATATTACTTAAGACTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAAAAATAGTTTGCCCCCCTTCATTCATATTACTTAAGACTGAA  600

seq1  ATTCCTCTAAGAAAATAGAATTTGTACGCAGATAACTTGAGTTTAAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCTAAGAAAATAGAATTTGTACGCAGATAACTTGAGTTTAAACTG  650

seq1  TAATTTGCTTAATTTTTCCTTGGTTAATGAAACCATTCCCTTGACTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGCTTAATTTTTCCTTGGTTAATGAAACCATTCCCTTGACTTAAA  700

seq1  AGCTTAAAAGGATTAGGGCAATATAGAGATTTGTATCCTTACAAGCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAAAAGGATTAGGGCAATATAGAGATTTGTATCCTTACAAGCTCTT  750

seq1  CCTGTCTCTATTAATATTAATAATATTTTTCTCCTCTACTC-TTTTTTTT  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTGTCTCTATTAATATTAATAATATTTTTCTCCTCTACTCTTTTTTTTT  800

seq1  TTAAATTATTATATGTAAGTTCATTGTAGTTGTCTTCAAACACACCAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATTATATGTAAGTTCATTGTAGTTGTCTTCAAACACACCAGAA  850

seq1  GAGGGCGTCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCGTCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCT  900

seq1  GGGATTTGAACTCAGGACC-TCGGGAATA-CAAGTCAGTGCTCTTAACTC  947
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  GGGATTTGAACTCAGGACCTTCGGGAATACCAAGTCAGTGCTCTTAACTC  950

seq1  CT-GAGCCATCTCA-CCAGCCCTACTCTTTTTTTTTTTTGTTTGTTTTTG  995
      || ||||||||||| ||||||||||||||||||||||||| ||  |||||
seq2  CTGGAGCCATCTCACCCAGCCCTACTCTTTTTTTTTTTTGGTTTGTTTTG  1000

seq1  TTTTTGTTTTAATGGAATGACTTCTA-TTATTTGACAACTTCACACATGT  1044
      |||| ||||||||||||||||||||| |||||||||| ||||||||||||
seq2  TTTTGGTTTTAATGGAATGACTTCTATTTATTTGACACCTTCACACATGT  1050

seq1  AAAAAACATATCTTT-GTCATATGGACCCACTAATGATCTTTTATGAGCA  1093
      |||| | || ||||| |||  ||| | |||||| ||||| ||||||  ||
seq2  AAAACATAT-TCTTTGGTCTAATGAATCCACTATTGATC-TTTATGGACA  1098

seq1  GGTGCCAAAATTGTCCA--CATTG--ACTTGTAGAAATATCTTACCTACA  1139
       ||||   ||| |||||   || |  |||||||||||  ||||| ||   
seq2  -GTGC---AATGGTCCATGTATGGAAACTTGTAGAAAATTCTTATCT--G  1142

seq1  CAGCAACCT  1148
      |||||||||
seq2  CAGCAACCT  1151