BAC Information

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BAC

Clone NameB6Ng01-085G23
Chromosome4 (Build37)17 (Build37)
Map Location 133,967,116 - 133,967,30635,066,401 - 35,067,419
singlet/doubletsingletsinglet
Overlap genePafah2
Upstream geneSlc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166
Downstream geneStmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085G23.bB6Ng01-085G23.g
ACCDH899106DH899107
length2201,021
definitionDH899106|Mus musculus domesticus DNA, BAC clone: B6Ng01-085G23, 5' end.DH899107|Mus musculus domesticus DNA, BAC clone: B6Ng01-085G23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(133,967,116 - 133,967,306)(35,066,401 - 35,067,419)
sequence
gaattctatttaaatttttttttattttatgtatatgaatacactgtagc
tgttttcagacacaccagaagagggcgtctgatctcattacagatggttg
tgagccaccatgtggttgctgctgggacttgaacttaggatctctggaag
agcagtcagtgctcttaaccactgagccatctctctaacccaagaatctt
ttttttttttttttaagttt
gaattcttgtgttttttgacctggtgacaatggtgaccatgatatagaag
ccagagccttgggcctgagaagcaggaatggccctacctcggtagcagtc
ccccagccatgcactaagcagtggacatgaatattttattgttttatggg
ttttgcttgttgcttcaattttatttatttacatcaggcctctctatgta
ttcttggctagctcctactatatagactaggctagatctaactcaaacca
atctcctggcctttgcctcccaagcaatagaatcatggatatgcgcaacc
attctcaagacagagttgtgctgtggagacctcaggggcctttgtagtct
aagtcctcccatgtccacattctaaatgtcgggattacagagaaagccac
catgatggtctggcatgtgatttttttttttttttgtcttgttatcaccc
tatgacatatacagttatttatcccactttgtgtgagaaaaacaggttat
acagcctggtctacagccagccagggaagttgtatcaaactgcctgaagt
ggcccggacaggaaaccaggatgtttggtttatacaccccagattatttt
ggggtacagtggggtgccattatcaggatccaccctgacggatctacttt
gcctctcagtcgaggacctggagagaaatgatggttcccaggagcggcct
tactacatgcccaaggcactcctgaagattctgggcaagaagaatgaggc
acctacagggggaaagaccaggaagaagtgagagactcatcgtgacctgg
aaatgcagccctcctgtacagaagccctgccgtcaatgcctttgagaatc
acgattttgtagaaaacagattttattaaagactaatatttatattcttg
ataagtttatggcttttatttttcagtgaaaacttgcttccttttttttt
tttaattaaaatccaaatttgctatccacccgattccatacccagtaaga
aaaaccttgttccgtgactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_133967116_133967306
seq2: B6Ng01-085G23.b_68_267

seq1  TTTATTTTATGTATATGAGTACATTGTAGCTGTCTTCAG--ACACCAGAA  48
      |||||||||||||||||| |||| ||||||||| |||||  |||||||||
seq2  TTTATTTTATGTATATGAATACACTGTAGCTGTTTTCAGACACACCAGAA  50

seq1  GAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACGATGTGGT---T  95
      |||||| || |||| ||||||||||||||||||||||| |||||||   |
seq2  GAGGGCGTCTGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCT  100

seq1  GCTGGAAATTGAGCTCAGGACCTCTGGAAGAGCAATCATTGCTCTTAACC  145
      ||||| | |||| || |||| ||||||||||||| ||| |||||||||||
seq2  GCTGGGACTTGAACTTAGGATCTCTGGAAGAGCAGTCAGTGCTCTTAACC  150

seq1  ACTGAGCCATCTCTCCAGCCC----TTCTTTTTTTTTTTTTTTTAAGTTT  191
      ||||||||||||||| | |||     ||||||||||||||||||||||||
seq2  ACTGAGCCATCTCTCTAACCCAAGAATCTTTTTTTTTTTTTTTTAAGTTT  200

seq1: chr17_35066401_35067419
seq2: B6Ng01-085G23.g_70_1090

seq1  GAATTCTTGTGTTTTTTGACCTGGTGACAATGGTGACCATGATATAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTGTTTTTTGACCTGGTGACAATGGTGACCATGATATAGAAG  50

seq1  CCAGAGCCTTGGGCCTGAGAAGCAGGAATGGCCCTACCTCGGTAGCAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCCTTGGGCCTGAGAAGCAGGAATGGCCCTACCTCGGTAGCAGTC  100

seq1  CCCCAGCCATGCACTAAGCAGTGGACATGAATATTTTATTGTTTTATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCATGCACTAAGCAGTGGACATGAATATTTTATTGTTTTATGGG  150

seq1  TTTTGCTTGTTGCTTCAATTTTATTTATTTACATCAGGCCTCTCTATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTGTTGCTTCAATTTTATTTATTTACATCAGGCCTCTCTATGTA  200

seq1  TTCTTGGCTAGCTCCTACTATATAGACTAGGCTAGATCTAACTCAAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGCTAGCTCCTACTATATAGACTAGGCTAGATCTAACTCAAACCA  250

seq1  ATCTCCTGGCCTTTGCCTCCCAAGCAATAGAATCATGGATATGCGCAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTGGCCTTTGCCTCCCAAGCAATAGAATCATGGATATGCGCAACC  300

seq1  ATTCTCAAGACAGAGTTGTGCTGTGGAGACCTCAGGGGCCTTTGTAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAAGACAGAGTTGTGCTGTGGAGACCTCAGGGGCCTTTGTAGTCT  350

seq1  AAGTCCTCCCATGTCCACATTCTAAATGTCGGGATTACAGAGAAAGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTCCCATGTCCACATTCTAAATGTCGGGATTACAGAGAAAGCCAC  400

seq1  CATGATGGTCTGGCATGTGATTTTTTTTTTTTTTTGTCTTGTTATCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGGTCTGGCATGTGATTTTTTTTTTTTTTTGTCTTGTTATCACCC  450

seq1  TATGACATATACAGTTATTTATCCCACTTTGTGTGAGAAAAACAGGTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACATATACAGTTATTTATCCCACTTTGTGTGAGAAAAACAGGTTAT  500

seq1  ACAGCCTGGTCTACAGCCAGCCAGGGAAGTTGTATCAAACTGCCTGAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGGTCTACAGCCAGCCAGGGAAGTTGTATCAAACTGCCTGAAGT  550

seq1  GGCCCGGACAGGAAACCAGGATGTTTGGTTTATACACCCCAGATTATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCGGACAGGAAACCAGGATGTTTGGTTTATACACCCCAGATTATTTT  600

seq1  GGGGTACAGTGGGGTGCCATTATCAGGATCCACCCTGACGGATCTACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTACAGTGGGGTGCCATTATCAGGATCCACCCTGACGGATCTACTTT  650

seq1  GCCTCTCAGTCGAGGACCTGGAGAGAAATGATGGTTCCCAGGAGCGGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCAGTCGAGGACCTGGAGAGAAATGATGGTTCCCAGGAGCGGCCT  700

seq1  TACTACATGCCCAAGGCACTCCTGAAGATTCTGGGCAAGAAGAATGAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACATGCCCAAGGCACTCCTGAAGATTCTGGGCAAGAAGAATGAGGC  750

seq1  ACCTACAGGGGGAAAGACCAGGAAGAAGTGAGAGACTCATCGTGACCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAGGGGGAAAGACCAGGAAGAAGTGAGAGACTCATCGTGACCTGG  800

seq1  AAATGCAGCCCTCCTGTACAGAAGCCCTGCCGTCAATGCC-TTGAGAATC  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAATGCAGCCCTCCTGTACAGAAGCCCTGCCGTCAATGCCTTTGAGAATC  850

seq1  ACGATTTTGTAGAAAACAGATTTTATTAAAGACTAATATTTTATATTCTT  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACGATTTTGTAGAAAACAGATTTTATTAAAGACTAATA-TTTATATTCTT  899

seq1  GATAAGTTTATGGCTTT--ATTTTCAGTGAAAACTTGCTTCCTTTTTTTT  947
      |||||||||||||||||   ||||||||||||||||||||||   |||||
seq2  GATAAGTTTATGGCTTTTATTTTTCAGTGAAAACTTGCTTCC---TTTTT  946

seq1  TTTTTTTAATTAAAATCCAAA-TTGCTAT-CACACGATTCAATACCCAGT  995
      ||||||||||||||||||||| ||||||| ||| |||||| |||||||||
seq2  TTTTTTTAATTAAAATCCAAATTTGCTATCCACCCGATTCCATACCCAGT  996

seq1  AAGAAAAA-CTTGTTCGGTGACTGA  1019
      |||||||| ||||||| ||||||||
seq2  AAGAAAAACCTTGTTCCGTGACTGA  1021