BAC Information

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BAC

Clone NameB6Ng01-085J23
Chromosome4 (Build37)
Map Location 9,548,390 - 9,712,448
singlet/doubletdoublet
Overlap geneAsph
Upstream geneEG666752, LOC666760, Chd7, LOC666782, LOC100039584, 4933402J24Rik
Downstream geneGdf6, 4930448K20Rik, LOC666840, 1700123O12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085J23.bB6Ng01-085J23.g
ACCDH899249DH899250
length1,1081,034
definitionDH899249|Mus musculus domesticus DNA, BAC clone: B6Ng01-085J23, 5' end.DH899250|Mus musculus domesticus DNA, BAC clone: B6Ng01-085J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,548,390 - 9,549,482)(9,711,416 - 9,712,448)
sequence
gaattcagaaagatgtgtccggagtgggctgaacaggctctcggtttatc
cttattgtttatgtaatgaaaggaaggtgtgaaaacaggaagctgggtaa
gaagaggaagggcaactaaggccgctaaggggacaggaaggtaggagata
aggtgtgaggcacgagctcaacctggacagatggagcctaaagggcaaag
gcctaacaaatgaggagggaggtgacagacagtagcctggggctgccatg
ggcaagctgggagcaggaagggaggaggcagggaagaccctgcctggctg
agtccctcgctgcacattaatacttctcatgctctccagactctttctta
cttacctcaatacaggatttaataaaggattaaaaccattacaattcaca
ctacgcacatagcaataaaaacaggtcattacattgtataacacaaactt
tcattttttttttttgaaactgagaagatgacaaagtatacttgattcac
agaatttacttattgagcaccaataaacacatccagtggctaatatggat
cattttcccagtcggagcaatcccagatttcctctgccctttagcagcga
actggagtgaggaaggtgagtcatttctgacaggccttcagttctttctc
ttctggccattttccttggcgacgtgagcatgcccagaggagcttcttcc
tcgcctgtctttgtctctggcagccactttactagaaacagcctttgtct
ctacggccttcttccagctttccttagacttgggaactcttgtcagagct
ggctttctccttgtctctgtctctcttccctgcagcgggatgcttttctg
ggatgtggtctgagtcatgctttcttcctccccttcccttctaatcctcc
tgctccttcttcccctgccttcgctcttcattcttgctaggcacaagctt
tccctctctccttcttcagctcttctttgatggggtcctttagctttcag
gttttcccaatcaagggaaaaaatgtttacttgaccacatctcctaaatt
catgtgccacggcaggttgaatgccctgttagaagtgcacggcctggttc
ccacccac

gaattctgtggaaattgaaggatgaggaagttgagcagaaagaaagagct
tgtctagagagattggacaactttatgtcaagatggccccaccttctgct
ttccaccatgaggctagcatctctttagcgccagcattacctatgttaga
tggtatagatgagagagtctgtgattggaagcagacagatctgtcacagt
cagaggcaggatttgaatgaccacttcttccgggaggaacttgtgaggtc
tcctggaggttgattctgagggcatgagttcagcgacatcagagtagctt
tcagggcttcccagggatatatttcaaaccagttccaagtggcagtgcca
gatgctcccactgaacaattcagctactcttggggagtgggcaggttctg
acaggaatggaggcacacagtcaggctattgagggaaatccaaggaccga
atgggatgaataccaaggagcaggcaaaagtcaagaaagagcatctttga
tagaattgcaaagggaaggtgcggcatagcaagtaataagtcacttatca
gtgacttaaaataagtaatgagaaactaacaaaaacagcagcaagcagcc
agtaagtcacttttcttggaaagagaaaatgtctgataagaacaacctaa
ggaagaaagagtttatggttcacacttagatggtacagtccatccaagta
gaggaggcagggcaacaggagattaggtgattgtttccatggcatccaca
gtcaggaagcagagaggaaagaaggctgatgctcagctcactttcttcct
tcttgtctttttatccatccaagactccagtgcattgggtgttgctgctc
tcttattacttaaacctctcaggaagtcacctctcatgcatgcgtaggag
gtctgtctcctagataatcatcaagtaaagagactacccatcacacggag
gcagagatgcagggtcacacgcacatggaggagggagttgcagagtccac
agcacaaggaagcagagatgcagggtcacagcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_9548390_9549482
seq2: B6Ng01-085J23.b_46_1153

seq1  GAATTCAGAAAGATGTGTCCGGAGTGGGCTGAACAGGCTCTCGGTTTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGATGTGTCCGGAGTGGGCTGAACAGGCTCTCGGTTTATC  50

seq1  CTTATTGTTTATGTAATGAAAGGAAGGTGTGAAAACAGGAAGCTGGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGTTTATGTAATGAAAGGAAGGTGTGAAAACAGGAAGCTGGGTAA  100

seq1  GAAGAGGAAGGGCAACTAAGGCCGCTAAGGGGACAGGAAGGTAGGAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAAGGGCAACTAAGGCCGCTAAGGGGACAGGAAGGTAGGAGATA  150

seq1  AGGTGTGAGGCACGAGCTCAACCTGGACAGATGGAGCCTAAAGGGCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGAGGCACGAGCTCAACCTGGACAGATGGAGCCTAAAGGGCAAAG  200

seq1  GCCTAACAAATGAGGAGGGAGGTGACAGACAGTAGCCTGGGGCTGCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAACAAATGAGGAGGGAGGTGACAGACAGTAGCCTGGGGCTGCCATG  250

seq1  GGCAAGCTGGGAGCAGGAAGGGAGGAGGCAGGGAAGACCCTGCCTGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCTGGGAGCAGGAAGGGAGGAGGCAGGGAAGACCCTGCCTGGCTG  300

seq1  AGTCCCTCGCTGCACATTAATACTTCTCATGCTCTCCAGACTCTTTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTCGCTGCACATTAATACTTCTCATGCTCTCCAGACTCTTTCTTA  350

seq1  CTTACCTCAATACAGGATTTAATAAAGGATTAAAACCATTACAATTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTCAATACAGGATTTAATAAAGGATTAAAACCATTACAATTCACA  400

seq1  CTACGCACATAGCAATAAAAACAGGTCATTACATTGTATAACACAAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGCACATAGCAATAAAAACAGGTCATTACATTGTATAACACAAACTT  450

seq1  TCATTTTTTTTTTTTGAAACTGAGAAGATGACAAAGTATACTTGATTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTTTTTTTGAAACTGAGAAGATGACAAAGTATACTTGATTCAC  500

seq1  AGAATTTACTTATTGAGCACCAATAAACACATCCAGTGGCTAATATGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTACTTATTGAGCACCAATAAACACATCCAGTGGCTAATATGGAT  550

seq1  CATTTTCCCAGTCGGAGCAATCCCAGATTTCCTCTGCCCTTTAGCAGCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCCAGTCGGAGCAATCCCAGATTTCCTCTGCCCTTTAGCAGCGA  600

seq1  ACTGGAGTGAGGAAGGTGAGTCATTTCTGACAGGCCTTCAGTTCTTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTGAGGAAGGTGAGTCATTTCTGACAGGCCTTCAGTTCTTTCTC  650

seq1  TTCTGGCCATTTTCCTTGGCGACGTGAGCATGCCCAGAGGAGCTTCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCCATTTTCCTTGGCGACGTGAGCATGCCCAGAGGAGCTTCTTCC  700

seq1  TCGCCTGTCTTTGTCTCTGGCAGCCACTTTACTAGAAACAGCCTTTGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTGTCTTTGTCTCTGGCAGCCACTTTACTAGAAACAGCCTTTGTCT  750

seq1  CTACGGCCTTCTTCCAGCTTTCCTTAGACTT-GGAACTCTTGTCAGAGCT  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTACGGCCTTCTTCCAGCTTTCCTTAGACTTGGGAACTCTTGTCAGAGCT  800

seq1  GGCTTTCTCCTTGTCTCTGTCTCTCTTCCCTGCAGC-GGATGC-TTTCTG  847
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  GGCTTTCTCCTTGTCTCTGTCTCTCTTCCCTGCAGCGGGATGCTTTTCTG  850

seq1  GGATGT-GTCTGAGTCAGGC-TTCTTCCTCCCCTTCCC-TCT-ATCCTCC  893
      |||||| |||||||||| || ||||||||||||||||| ||| |||||||
seq2  GGATGTGGTCTGAGTCATGCTTTCTTCCTCCCCTTCCCTTCTAATCCTCC  900

seq1  TGCTCCTTCTTCCCCTGCCTTCGCTCTTCATTCTTGCTAGGCAC-AGCTT  942
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGCTCCTTCTTCCCCTGCCTTCGCTCTTCATTCTTGCTAGGCACAAGCTT  950

seq1  TCCCTCTCTCCTTCTTCAGCTCTTCTTTGAT-GGGTTCTTTAGCTTTCAG  991
      ||||||||||||||||||||||||||||||| |||| |||||||||||||
seq2  TCCCTCTCTCCTTCTTCAGCTCTTCTTTGATGGGGTCCTTTAGCTTTCAG  1000

seq1  GTTTT-CCAATCAAAGGAAAAAATGTTTAC-TGACCACATCTCTTAAA-T  1038
      ||||| |||||||| ||||||||||||||| |||||||||||| |||| |
seq2  GTTTTCCCAATCAAGGGAAAAAATGTTTACTTGACCACATCTCCTAAATT  1050

seq1  CA--TGGCACGGCATGTTAGATGCCCTTGTTAGA--TGCACTGCCCTGTT  1084
      ||  || ||||||| |||  |||||| |||||||  ||||| |||  |||
seq2  CATGTGCCACGGCAGGTTGAATGCCC-TGTTAGAAGTGCACGGCCTGGTT  1099

seq1  CCCACCCAC  1093
      |||||||||
seq2  CCCACCCAC  1108


seq1: chr4_9711416_9712448
seq2: B6Ng01-085J23.g_70_1103 (reverse)

seq1  GTGCTGTGACCCTGCATCTCTGCTTCCTTGTGCTGT-GACTCTGCATCT-  48
      |||||||||||||||||||||||||||||||||||| ||||||||| || 
seq2  GTGCTGTGACCCTGCATCTCTGCTTCCTTGTGCTGTGGACTCTGCAACTC  50

seq1  CCTCCTCCATGTGCTGTGTGACCCTGCATCTCTGCCTCCGTGTGATGGGT  98
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCATGTGC-GTGTGACCCTGCATCTCTGCCTCCGTGTGATGGGT  99

seq1  AGTCTCTTTACTTGATGATTATCTAGGAGACAGACCT-CTACGCATGCAT  147
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTCTCTTTACTTGATGATTATCTAGGAGACAGACCTCCTACGCATGCAT  149

seq1  GAGAGGTGACTTCCTGAGAGGTTTAAGTAAATAAGAGAGCAGCAACACCC  197
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAGAGGTGACTTCCTGAGAGGTTTAAGT-AATAAGAGAGCAGCAACACCC  198

seq1  AATGCACTGGAGTCTTGGATGGATAAAAAGACAAGAAGGAAGAAAGTGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACTGGAGTCTTGGATGGATAAAAAGACAAGAAGGAAGAAAGTGAG  248

seq1  CTGAGCATCAGCCTTCTTTCCTCTCTGCTTCCTGACTGTGGATGCCATGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCATCAGCCTTCTTTCCTCTCTGCTTCCTGACTGTGGATGCCATGG  298

seq1  AAACAATCACCTAATCTCCTGTTGCCCTGCCTCCTCTACTTGGATGGACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATCACCTAATCTCCTGTTGCCCTGCCTCCTCTACTTGGATGGACT  348

seq1  GTACCATCTAAGTGTGAACCATAAACTCTTTCTTCCTTAGGTTGTTCTTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATCTAAGTGTGAACCATAAACTCTTTCTTCCTTAGGTTGTTCTTA  398

seq1  TCAGACATTTTCTCTTTCCAAGAAAAGTGACTTACTGGCTGCTTGCTGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACATTTTCTCTTTCCAAGAAAAGTGACTTACTGGCTGCTTGCTGCT  448

seq1  GTTTTTGTTAGTTTCTCATTACTTATTTTAAGTCACTGATAAGTGACTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTAGTTTCTCATTACTTATTTTAAGTCACTGATAAGTGACTTA  498

seq1  TTACTTGCTATGCCGCACCTTCCCTTTGCAATTCTATCAAAGATGCTCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGCTATGCCGCACCTTCCCTTTGCAATTCTATCAAAGATGCTCTT  548

seq1  TCTTGACTTTTGCCTGCTCCTTGGTATTCATCCCATTCGGTCCTTGGATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACTTTTGCCTGCTCCTTGGTATTCATCCCATTCGGTCCTTGGATT  598

seq1  TCCCTCAATAGCCTGACTGTGTGCCTCCATTCCTGTCAGAACCTGCCCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAATAGCCTGACTGTGTGCCTCCATTCCTGTCAGAACCTGCCCAC  648

seq1  TCCCCAAGAGTAGCTGAATTGTTCAGTGGGAGCATCTGGCACTGCCACTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGAGTAGCTGAATTGTTCAGTGGGAGCATCTGGCACTGCCACTT  698

seq1  GGAACTGGTTTGAAATATATCCCTGGGAAGCCCTGAAAGCTACTCTGATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGTTTGAAATATATCCCTGGGAAGCCCTGAAAGCTACTCTGATG  748

seq1  TCGCTGAACTCATGCCCTCAGAATCAACCTCCAGGAGACCTCACAAGTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGAACTCATGCCCTCAGAATCAACCTCCAGGAGACCTCACAAGTTC  798

seq1  CTCCCGGAAGAAGTGGTCATTCAAATCCTGCCTCTGACTGTGACAGATCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGGAAGAAGTGGTCATTCAAATCCTGCCTCTGACTGTGACAGATCT  848

seq1  GTCTGCTTCCAATCACAGACTCTCTCATCTATACCATCTAACATAGGTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTTCCAATCACAGACTCTCTCATCTATACCATCTAACATAGGTAA  898

seq1  TGCTGGCGCTAAAGAGATGCTAGCCTCATGGTGGAAAGCAGAAGGTGGGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCGCTAAAGAGATGCTAGCCTCATGGTGGAAAGCAGAAGGTGGGG  948

seq1  CCATCTTGACATAAAGTTGTCCAATCTCTCTAGACAAGCTCTTTCTTTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTGACATAAAGTTGTCCAATCTCTCTAGACAAGCTCTTTCTTTCT  998

seq1  GCTCAACTTCCTCATCCTTCAATTTCCACAGAATTC  1033
      ||||||||||||||||||||||||||||||||||||
seq2  GCTCAACTTCCTCATCCTTCAATTTCCACAGAATTC  1034


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