BAC Information

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BAC

Clone NameB6Ng01-085M21
Chromosome4 (Build37)
Map Location 14,009,132 - 14,105,952
singlet/doubletdoublet
Overlap geneLOC625831, LOC433687
Upstream geneLOC100039988, Runx1t1
Downstream geneLOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085M21.bB6Ng01-085M21.g
ACCDH899372DH899373
length1,1531,095
definitionDH899372|Mus musculus domesticus DNA, BAC clone: B6Ng01-085M21, 5' end.DH899373|Mus musculus domesticus DNA, BAC clone: B6Ng01-085M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,104,805 - 14,105,952)(14,009,132 - 14,010,237)
sequence
gaattcttccctaaacattccacctggaagagctagttttattgttgcta
tggtaacacactatttgattggcagtgtttgattttaactgtgagttgtc
ttctttgtaacaccggcatcagaagcagcagaggcccacttataatggct
cattttgcttttctgctacacaaccaggtctgtacattacattcaaagaa
cagacaatgggtagtagaaaataaatcctataaaatttttttaaaaggcc
aaaaatgtgaaagcatagcatttaaacattcttgcactattcactagctg
tgagttctatggtggggagtacggagtgtataggcaacagtctcaaactg
tgtcattttattttgcatcttacatcctccagagtacttccataataaat
gcacactgggcattcaattaactagactagtctaatatctttgggaaaaa
tagttttatatttaacttcactgtattctcaaatcatctaagtgcatggc
gaaagcatcacctttttaaacaacttctcggtcttttggtgtttatacta
aaattcaaagtcttccctccagtgaatgatgctcaaagcacaaggacctg
cctttcatcaatatttcagtatgcttgcactctagatccttgccccagtt
cactactttaaattctagggtgcatttctctccaagtctggtgtctacaa
aaggtactgctcaaaggtggtttatcccctcctggtatctttccctgcct
gcaccttgtatagagctttctacagagctggtcctgagtaatccacatgt
tagtaactaagtaaaggctttctgtttgcttctttgaaagactcacttgt
tgggtaaaaaatgtaaaggaaattgctctgaactcggtgtaatttgtttc
tgtagagtctatcatcttgatatcttagacatttctacatgccactacac
tattaagttatatccttaagtcataccatcaaagaaactgctaaaaatgt
tgtagtttatgtcctatatacatattttctaatggattgggggtttaaat
aatatttccaattttggactatatcttggccaattaattactggacattt
aattggaactggagaggatttttaattttgatggggatgatctctatctc
tct
gaattccagtgaactacagaatagtcagccagtcactcagcccagtgaca
gttacaataagacattaaaaaaaaatctacaaagtgaaatggaaagccat
ttcaaaaatgcttcaaatcagaactcttataaataccaaagcaccatttt
catgcaatttgtttcatcttggtttgctgagcaagtaggcacaaagacaa
accagaaacaggtgtctagacgtgttaaaatcttctttagttcagcaagt
acttgcttacatacttttgttattctaaggattatgataaggacctggtt
aaaatgataaatgaaaagtttaattcattttactgtaggtccaattttta
ggcctaagaacttaacacttaagctttgactcaatgataatcttagtgat
taatgcatgtcctgggttcaaataaagcatccataaatgttagtgctagt
ataaacttgaacaatttacataatctctttaatctacaatttgtatgttg
ataaaatgatgttgttattaatttcccctgaagatttgataggaattgat
atacaatctagaaattagtacaaaggattgtggtttctttcattagtatt
gaaattataacgttttagaagagcagaagacacagtgtagggttgttctt
caatagagcagaagtaaaatgctttttactctgtagcataccacccaaaa
tacaatagcttaaaataatgactattcaatacataatctgcacattgatt
cttgtgaactaaatgatatgggaatgggtgttctcgaaggagctcagtca
tgtctacagcctcagttgaacagctgagagacctggcatgttcaactgtt
tcttgtctaaagtacaactgaaggagaatcttctaaagcatactgttaaa
atgaacattcccgacaaattgatgctccaagtcattttatatagtgcttc
actttacccccattttccatatcggtagaagccttgtctttaaatatgat
ggttgagttgtctgggtgggaaaggcaggcatgctctcatggtgaaccaa
attcacaaaacaatattgaacatggctcctatatgttgaaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_14104805_14105952
seq2: B6Ng01-085M21.b_46_1198 (reverse)

seq1  AGAGAGATAGAGATGAT-CCCATCAAAATATAAAATACACTCTCAGTT-C  48
      |||||||||||||| || |||||||||||  ||||| | ||| ||||| |
seq2  AGAGAGATAGAGATCATCCCCATCAAAATTAAAAATCCTCTC-CAGTTCC  49

seq1  AATTAAATGT-CAGTAAATAATATTGCCAAGATATAGTACATAAATTGGA  97
      |||||||||| |||||| |||| | ||||||||||||| || ||||||||
seq2  AATTAAATGTCCAGTAATTAAT-TGGCCAAGATATAGTCCA-AAATTGGA  97

seq1  AATATTATTTAAA--CACAATCCATTAG-AAATATGTATATTAGGACATA  144
      |||||||||||||  | ||||||||||| ||||||||||| |||||||||
seq2  AATATTATTTAAACCCCCAATCCATTAGAAAATATGTATA-TAGGACATA  146

seq1  AA-TACAACATATTTTAGCAG-TTCTTTGATGGTATGACTTAAGGATATA  192
      || |||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  AACTACAACAT-TTTTAGCAGTTTCTTTGATGGTATGACTTAAGGATATA  195

seq1  ACTT-ATAGTTGTAGT-GCATGTAGAAATGTCTAAGATATCAAGATGATA  240
      |||| |||| |||||| |||||||||||||||||||||||||||||||||
seq2  ACTTAATAG-TGTAGTGGCATGTAGAAATGTCTAAGATATCAAGATGATA  244

seq1  GACTCTACAGAAACAAATTACACCGAGTTCAGAGCAATTTCCTTTACATT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTACAGAAACAAATTACACCGAGTTCAGAGCAATTTCCTTTACATT  294

seq1  TTTTA-CCAACAAGTGAGTCTTTCAAAGAAGCAAACAGAAAGCCTTTACT  339
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCCAACAAGTGAGTCTTTCAAAGAAGCAAACAGAAAGCCTTTACT  344

seq1  TAGTTACTAACATGTGGATTACTCAGGACCAGCTCTGTAGAAAGCTCTAT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACTAACATGTGGATTACTCAGGACCAGCTCTGTAGAAAGCTCTAT  394

seq1  ACAAGGTGCAGGCAGGGAAAGATACCAGGAGGGGATAAACCACCTTTGAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTGCAGGCAGGGAAAGATACCAGGAGGGGATAAACCACCTTTGAG  444

seq1  CAGTACCTTTTGTAGACACCAGACTTGGAGAGAAATGCACCCTAGAATTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCTTTTGTAGACACCAGACTTGGAGAGAAATGCACCCTAGAATTT  494

seq1  AAAGTAGTGAACTGGGGCAAGGATCTAGAGTGCAAGCATACTGAAATATT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGTGAACTGGGGCAAGGATCTAGAGTGCAAGCATACTGAAATATT  544

seq1  GATGAAAGGCAGGTCCTTGTGCTTTGAGCATCATTCACTGGAGGGAAGAC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAGGCAGGTCCTTGTGCTTTGAGCATCATTCACTGGAGGGAAGAC  594

seq1  TTTGAATTTTAGTATAAACACCAAAAGACCGAGAAGTTGTTTAAAAAGGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTTTAGTATAAACACCAAAAGACCGAGAAGTTGTTTAAAAAGGT  644

seq1  GATGCTTTCGCCATGCACTTAGATGATTTGAGAATACAGTGAAGTTAAAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTTCGCCATGCACTTAGATGATTTGAGAATACAGTGAAGTTAAAT  694

seq1  ATAAAACTATTTTTCCCAAAGATATTAGACTAGTCTAGTTAATTGAATGC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTATTTTTCCCAAAGATATTAGACTAGTCTAGTTAATTGAATGC  744

seq1  CCAGTGTGCATTTATTATGGAAGTACTCTGGAGGATGTAAGATGCAAAAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGCATTTATTATGGAAGTACTCTGGAGGATGTAAGATGCAAAAT  794

seq1  AAAATGACACAGTTTGAGACTGTTGCCTATACACTCCGTACTCCCCACCA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACACAGTTTGAGACTGTTGCCTATACACTCCGTACTCCCCACCA  844

seq1  TAGAACTCACAGCTAGTGAATAGTGCAAGAATGTTTAAATGCTATGCTTT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTCACAGCTAGTGAATAGTGCAAGAATGTTTAAATGCTATGCTTT  894

seq1  CACATTTTTGGCCTTTTAAAAAAATTTTATAGGATTTATTTTCTACTACC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTTGGCCTTTTAAAAAAATTTTATAGGATTTATTTTCTACTACC  944

seq1  CATTGTCTGTTCTTTGAATGTAATGTACAGACCTGGTTGTGTAGCAGAAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCTGTTCTTTGAATGTAATGTACAGACCTGGTTGTGTAGCAGAAA  994

seq1  AGCAAAATGAGCCATTATAAGTGGGCCTCTGCTGCTTCTGATGCCGGTGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATGAGCCATTATAAGTGGGCCTCTGCTGCTTCTGATGCCGGTGT  1044

seq1  TACAAAGAAGACAACTCACAGTTAAAATCAAACACTGCCAATCAAATAGT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGAAGACAACTCACAGTTAAAATCAAACACTGCCAATCAAATAGT  1094

seq1  GTGTTACCATAGCAACAATAAAACTAGCTCTTCCAGGTGGAATGTTTAGG  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTACCATAGCAACAATAAAACTAGCTCTTCCAGGTGGAATGTTTAGG  1144

seq1  GAAGAATTC  1148
      |||||||||
seq2  GAAGAATTC  1153

seq1: chr4_14009132_14010237
seq2: B6Ng01-085M21.g_71_1165

seq1  GAATTCCAGTGAACTACAGAATAGTCAGCCAGTCACTCAGCCCAGTGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGAACTACAGAATAGTCAGCCAGTCACTCAGCCCAGTGACA  50

seq1  GTTACAATAAGACATTAAAAAAAAATCTACAAAGTGAAATGGAAAGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAATAAGACATTAAAAAAAAATCTACAAAGTGAAATGGAAAGCCAT  100

seq1  TTCAAAAATGCTTCAAATCAGAACTCTTATAAATACCAAAGCACCATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAATGCTTCAAATCAGAACTCTTATAAATACCAAAGCACCATTTT  150

seq1  CATGCAATTTGTTTCATCTTGGTTTGCTGAGCAAGTAGGCACAAAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATTTGTTTCATCTTGGTTTGCTGAGCAAGTAGGCACAAAGACAA  200

seq1  ACCAGAAACAGGTGTCTAGACGTGTTAAAATCTTCTTTAGTTCAGCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAACAGGTGTCTAGACGTGTTAAAATCTTCTTTAGTTCAGCAAGT  250

seq1  ACTTGCTTACATACTTTTGTTATTCTAAGGATTATGATAAGGACCTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTACATACTTTTGTTATTCTAAGGATTATGATAAGGACCTGGTT  300

seq1  AAAATGATAAATGAAAAGTTTAATTCATTTTACTGTAGGTCCAATTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATAAATGAAAAGTTTAATTCATTTTACTGTAGGTCCAATTTTTA  350

seq1  GGCCTAAGAACTTAACACTTAAGCTTTGACTCAATGATAATCTTAGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAAGAACTTAACACTTAAGCTTTGACTCAATGATAATCTTAGTGAT  400

seq1  TAATGCATGTCCTGGGTTCAAATAAAGCATCCATAAATGTTAGTGCTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCATGTCCTGGGTTCAAATAAAGCATCCATAAATGTTAGTGCTAGT  450

seq1  ATAAACTTGAACAATTTACATAATCTCTTTAATCTACAATTTGTATGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTTGAACAATTTACATAATCTCTTTAATCTACAATTTGTATGTTG  500

seq1  ATAAAATGATGTTGTTATTAATTTCCCCTGAAGATTTGATAGGAATTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGATGTTGTTATTAATTTCCCCTGAAGATTTGATAGGAATTGAT  550

seq1  ATACAATCTAGAAATTAGTACAAAGGATTGTGGTTTCTTTCATTAGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATCTAGAAATTAGTACAAAGGATTGTGGTTTCTTTCATTAGTATT  600

seq1  GAAATTATAACGTTTTAGAAGAGCAGAAGACACAGTGTAGGGTTGTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATAACGTTTTAGAAGAGCAGAAGACACAGTGTAGGGTTGTTCTT  650

seq1  CAATAGAGCAGAAGTAAAATGCTTTTTACTCTGTAGCATACCACCCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAGCAGAAGTAAAATGCTTTTTACTCTGTAGCATACCACCCAAAA  700

seq1  TACAATAGCTTAAAATAATGACTATTCAATACATAATCTGCACATTGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAGCTTAAAATAATGACTATTCAATACATAATCTGCACATTGATT  750

seq1  CTTGTGAACTAAATGATATGGGAATGGGTGTTCTCGAAGGAGCTCAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAACTAAATGATATGGGAATGGGTGTTCTCGAAGGAGCTCAGTCA  800

seq1  TGTCTACAGCCTCAGTTGAACAGCTGAGAGACCTGGCATGTTCAACTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACAGCCTCAGTTGAACAGCTGAGAGACCTGGCATGTTCAACTGTT  850

seq1  TCTTGTCTAAAAGTACAACTGAAGGAGAATCTTCTAAAGCATACTGTTAA  900
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  TCTTGTCT-AAAGTACAACTGAAGGAGAATCTTCTAAAGCATACTGTT-A  898

seq1  AAATGAACATTCCCGACAAAATTGATGCTCCAAGTCATTTTAATATAGGT  950
      ||||||||||||||||| ||||||||||||||||||||||| ||||| ||
seq2  AAATGAACATTCCCGAC-AAATTGATGCTCCAAGTCATTTT-ATATA-GT  945

seq1  GCTTCACTTTACCCCCATTCTTCCATATCGGTAGAAGCCCTGTC-TTAAA  999
      ||||||||||||||||||| ||||||||||||||||||| |||| |||||
seq2  GCTTCACTTTACCCCCATT-TTCCATATCGGTAGAAGCCTTGTCTTTAAA  994

seq1  TATGATGGGTTGAGTTGTCTGGGTGAGAAAGGGCAGGCATGCTC-CATGG  1048
      |||||| |||||||||||||||||| |||| ||||||||||||| |||||
seq2  TATGAT-GGTTGAGTTGTCTGGGTGGGAAA-GGCAGGCATGCTCTCATGG  1042

seq1  TTAAACCAAAATACAACAAGAACAAATATGAACATGGCTCCTAGTATGTG  1098
       | ||||||| |   |||| |||||   ||||||||||||||| ||||| 
seq2  -TGAACCAAATT--CACAA-AACAATATTGAACATGGCTCCTA-TATGTT  1087

seq1  GAAGGAGA  1106
      ||||||||
seq2  GAAGGAGA  1095