BAC Information

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BAC

Clone NameB6Ng01-086B20
Chromosome4 (Build37)
Map Location 96,712,741 - 96,832,484
singlet/doubletdoublet
Overlap genenone
Upstream geneCyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia, LOC100039459, LOC669426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086B20.bB6Ng01-086B20.g
ACCDH899601DH899602
length1,1621,082
definitionDH899601|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B20, 5' end.DH899602|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,712,741 - 96,713,901)(96,831,394 - 96,832,484)
sequence
gaattcacgcacatttccttgtatatgtaaaagtgatccaaagctcataa
attgaagttatgtttcttagtggcattacttgaagagtatttgcagtctt
tagtaggtggcatctttctgaaagagtagttcaccagagctggcctttga
agggttcataccgattgcctgaactctgcttctgggtgttctctgcttcc
ttcgccctgttatataagcacgtgtccttcctcacaagctcctgtctatc
atatcctgagaggctccatctgctttccaatcagaacagactgaaatccc
ccaaaactgtgagccaattaattcttcctgccttgccttattctgttaga
tatatatggctacaggatgcaaacataacgtaggcacccatattattaca
tcgttttgataaagaaaagggatagtaaaagtgatgagagccaccatcag
tgttcttattttctgtgtagtagattttactgattctcatggcttcccca
gtatttgtttgaatgttgctgattagagtccaaatgaaaaccattggcct
tgtcattcttccttagtctctttcttctttactgttatttgttggttttt
ttttttcacaagactctatcagctatttagtaaatttttcaagaaactca
tttgtgagagtatacatttgtctgtgaagattggtcaagatactgttcac
gtagggatggaagtcatggacaatcacttctctgcactatatgaaaagaa
tattgaaaatcaagcctctggatagtagatccatgttgactttaaaagag
acatttgtttccctaaaaggaaaatggctttttaaggtgctgcttctctt
tccccttcctgtgtgcaagtttccctccaggatgttcaaaacagtgttca
agagctaaatgtttccccattactgtagaatacgactgtttgacaaggga
acatcagcacaaatgatgcaaccagttaagttctattggacaaacagagg
gaaaggggcagaaagttaacataggttctaaaccatgtagacatcctaga
gtcaggtcttagaggaccagtttcattaactatcctacctgcaatcagaa
gcttgaagtgttctgaacaccttggaatagaatcccgagaacacctctgg
ctagctctcaaa
gaattcaaagcgagtaaatgctcttctttccagtggatttggatggaggc
acagaggcaggagagcctgacgtgggatttcctttgcctccagccaaaag
ccacaggattctctcatttattctaaatcgtttgctctaaatgaacctca
tagttcgcgctgcccaaagccctagccccagtctttcccttttttttttc
tcaaactcttctcaaatccactgtttaatctctgtccaaagactgaccac
aggagaaatttgaagaaattataagtacaaaagaaggactccagtctgta
attctgtttttccccacctaggtcagtgaatatgtctgttcccccaaaac
tatatttctgtacccacagagaagtggtaaatggttaaggagaaagatta
aaatggcatccagaaattgctgccctaatcctaacattatgacaggcatt
gctgcctttaagctgtgttttcttggaattgtcctaacttttatttctaa
aaataattgatatatgctgattgtttctacctacatatttcacccctagt
cttgagaactataactcctttttacatctcatttatatatttcttagcta
tcttcatttataaatgatttctaacactataaaagttggataactcatgt
atgtcacagagctaacacacaatgtgactggattctgaagataggttccc
tggcttcatttctacaactgtcctcactgccaggtagcatggctgcaaca
ttttgtggctggagttgttcctggtgttagcttcctaagtttcaagtggc
atgtcaatggataacatagactaatcactttggtatccacaggggttgag
attccataataaattctggatgctttgtccactgcaaacttttttctcca
aagtgttattcccacttccttgcagaagttaatcctgctcttcaaacctt
ggtccccatgtgtgggctgctaaagcactttcaccaggtattcaaatgta
aacaatacaatcacactcatctacaaatagcagaaacagccacagggctt
tatgaagagaaagtagtccttttttaatgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_96712741_96713901
seq2: B6Ng01-086B20.b_41_1202

seq1  GAATTCACGCACATTTCCTTGTATATGTAAAAGTGATCCAAAGCTCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGCACATTTCCTTGTATATGTAAAAGTGATCCAAAGCTCATAA  50

seq1  ATTGAAGTTATGTTTCTTAGTGGCATTACTTGAAGAGTATTTGCAGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGTTATGTTTCTTAGTGGCATTACTTGAAGAGTATTTGCAGTCTT  100

seq1  TAGTAGGTGGCATCTTTCTGAAAGAGTAGTTCACCAGAGCTGGCCTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGTGGCATCTTTCTGAAAGAGTAGTTCACCAGAGCTGGCCTTTGA  150

seq1  AGGGTTCATACCGATTGCCTGAACTCTGCTTCTGGGTGTTCTCTGCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCATACCGATTGCCTGAACTCTGCTTCTGGGTGTTCTCTGCTTCC  200

seq1  TTCGCCCTGTTATATAAGCACGTGTCCTTCCTCACAAGCTCCTGTCTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCCTGTTATATAAGCACGTGTCCTTCCTCACAAGCTCCTGTCTATC  250

seq1  ATATCCTGAGAGGCTCCATCTGCTTTCCAATCAGAACAGACTGAAATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTGAGAGGCTCCATCTGCTTTCCAATCAGAACAGACTGAAATCCC  300

seq1  CCAAAACTGTGAGCCAATTAATTCTTCCTGCCTTGCCTTATTCTGTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTGTGAGCCAATTAATTCTTCCTGCCTTGCCTTATTCTGTTAGA  350

seq1  TATATATGGCTACAGGATGCAAACATAACGTAGGCACCCATATTATTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGGCTACAGGATGCAAACATAACGTAGGCACCCATATTATTACA  400

seq1  TCGTTTTGATAAAGAAAAGGGATAGTAAAAGTGATGAGAGCCACCATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTTGATAAAGAAAAGGGATAGTAAAAGTGATGAGAGCCACCATCAG  450

seq1  TGTTCTTATTTTCTGTGTAGTAGATTTTACTGATTCTCATGGCTTCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTATTTTCTGTGTAGTAGATTTTACTGATTCTCATGGCTTCCCCA  500

seq1  GTATTTGTTTGAATGTTGCTGATTAGAGTCCAAATGAAAACCATTGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTTTGAATGTTGCTGATTAGAGTCCAAATGAAAACCATTGGCCT  550

seq1  TGTCATTCTTCCTTAGTCTCTTTCTTCTTTACTGTTATTTGTTGGTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTCTTCCTTAGTCTCTTTCTTCTTTACTGTTATTTGTTGGTTTTT  600

seq1  TTTTTTCACAAGACTCTATCAGCTATTTAGTAAATTTTTCAAGAAACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCACAAGACTCTATCAGCTATTTAGTAAATTTTTCAAGAAACTCA  650

seq1  TTTGTGAGAGTATACATTTGTCTGTGAAGATTGGTCAAGATACTGTTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAGAGTATACATTTGTCTGTGAAGATTGGTCAAGATACTGTTCAC  700

seq1  GTAGGGATGGAAGTCATGGACAATCACTTCTCTGCACTATATGAAAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGATGGAAGTCATGGACAATCACTTCTCTGCACTATATGAAAAGAA  750

seq1  TATTGAAAATCAAGCCTCTGGATAGTAGATCCATGTTGACTTTAAAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAAATCAAGCCTCTGGATAGTAGATCCATGTTGACTTTAAAAGAG  800

seq1  ACATTTGTTTCCCTAAAAGGAAAATGGCTTTTTAAGGTGCTGCTTCTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTTTCCCTAAAAGGAAAATGGCTTTTTAAGGTGCTGCTTCTCTT  850

seq1  TCCCCTTCCTGTGTGCAAGTTTCCCTCCAGGATGTTCAAAACAGTGTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCCTGTGTGCAAGTTTCCCTCCAGGATGTTCAAAACAGTGTTCA  900

seq1  AGAGCTAAATGTTTCCCCATTACTGTAGAATACGACTGTTTGACAA-GGA  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGAGCTAAATGTTTCCCCATTACTGTAGAATACGACTGTTTGACAAGGGA  950

seq1  ACATCAGCACAAATGATGCAACCAGTTAAGTTCTATTGGACAAACAGAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGCACAAATGATGCAACCAGTTAAGTTCTATTGGACAAACAGAGG  1000

seq1  GAAAGGGGCAGAAAGTTAACATA-GTTCTAAACCATGTAGACATCCTAGA  1048
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAAGGGGCAGAAAGTTAACATAGGTTCTAAACCATGTAGACATCCTAGA  1050

seq1  GTCAGGTCTAAGA-GACCAGTTTTCATTAACTATCCTACCTGCAATCAGA  1097
      ||||||||| ||| |||||| |||||||||||||||||||||||||||||
seq2  GTCAGGTCTTAGAGGACCAG-TTTCATTAACTATCCTACCTGCAATCAGA  1099

seq1  AAGCTGAAGTG-TCTGAAACAACATTGAATAGAATCCAGAG-ACACATCT  1145
      |   ||||||| |||| |||| | | ||||||||||| ||| |||| |||
seq2  AGCTTGAAGTGTTCTG-AACACCTTGGAATAGAATCCCGAGAACACCTCT  1148

seq1  GGGCTTAGCTCTCAAA  1161
      ||   |||||||||||
seq2  GG--CTAGCTCTCAAA  1162

seq1: chr4_96831394_96832484
seq2: B6Ng01-086B20.g_66_1147 (reverse)

seq1  CAGCATATAAAAAAAGGGACTAAACTTCTCTTCATAAAGCCCTGTGGCTG  50
      |||||| |||||||  ||||| |  |||||||||||||||||||||||||
seq2  CAGCAT-TAAAAAA--GGACT-ACTTTCTCTTCATAAAGCCCTGTGGCTG  46

seq1  TTTCCTGCCTATTTGTAAGATGAAGTGTGAATTGTATTGTTTACATTTGA  100
      ||| ||| |||||||| ||||| |||||| ||||||||||||||||||||
seq2  TTT-CTG-CTATTTGT-AGATG-AGTGTG-ATTGTATTGTTTACATTTGA  91

seq1  ATACCTGGTGAAAGTGCTTTAGCAGCCCACACATGGGGACCAAGGTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGGTGAAAGTGCTTTAGCAGCCCACACATGGGGACCAAGGTTTGA  141

seq1  AGGGCAGGATTAACTTCTGCAAGGAAGTGGGAATAACACTTTGGAGAAAA  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGATTAACTTCTGCAAGGAAGTGGGAATAACACTTTGGAGAAAA  191

seq1  AAGTTTGCAGTGGACAAAGCATCCAGAATTTATTATGGAATCTCAACCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGCAGTGGACAAAGCATCCAGAATTTATTATGGAATCTCAACCCC  241

seq1  TGTGGATACCAAAGTGATTAGTCTATGTTATCCATTGACATGCCACTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATACCAAAGTGATTAGTCTATGTTATCCATTGACATGCCACTTGA  291

seq1  AACTTAGGAAGCTAACACCAGGAACAACTCCAGCCACAAAATGTTGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGGAAGCTAACACCAGGAACAACTCCAGCCACAAAATGTTGCAGC  341

seq1  CATGCTACCTGGCAGTGAGGACAGTTGTAGAAATGAAGCCAGGGAACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTACCTGGCAGTGAGGACAGTTGTAGAAATGAAGCCAGGGAACCTA  391

seq1  TCTTCAGAATCCAGTCACATTGTGTGTTAGCTCTGTGACATACATGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGAATCCAGTCACATTGTGTGTTAGCTCTGTGACATACATGAGTT  441

seq1  ATCCAACTTTTATAGTGTTAGAAATCATTTATAAATGAAGATAGCTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACTTTTATAGTGTTAGAAATCATTTATAAATGAAGATAGCTAAGA  491

seq1  AATATATAAATGAGATGTAAAAAGGAGTTATAGTTCTCAAGACTAGGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAAATGAGATGTAAAAAGGAGTTATAGTTCTCAAGACTAGGGGT  541

seq1  GAAATATGTAGGTAGAAACAATCAGCATATATCAATTATTTTTAGAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGTAGGTAGAAACAATCAGCATATATCAATTATTTTTAGAAATA  591

seq1  AAAGTTAGGACAATTCCAAGAAAACACAGCTTAAAGGCAGCAATGCCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAGGACAATTCCAAGAAAACACAGCTTAAAGGCAGCAATGCCTGT  641

seq1  CATAATGTTAGGATTAGGGCAGCAATTTCTGGATGCCATTTTAATCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGTTAGGATTAGGGCAGCAATTTCTGGATGCCATTTTAATCTTTC  691

seq1  TCCTTAACCATTTACCACTTCTCTGTGGGTACAGAAATATAGTTTTGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAACCATTTACCACTTCTCTGTGGGTACAGAAATATAGTTTTGGGG  741

seq1  GAACAGACATATTCACTGACCTAGGTGGGGAAAAACAGAATTACAGACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGACATATTCACTGACCTAGGTGGGGAAAAACAGAATTACAGACTG  791

seq1  GAGTCCTTCTTTTGTACTTATAATTTCTTCAAATTTCTCCTGTGGTCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTTCTTTTGTACTTATAATTTCTTCAAATTTCTCCTGTGGTCAGT  841

seq1  CTTTGGACAGAGATTAAACAGTGGATTTGAGAAGAGTTTGAGAAAAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGACAGAGATTAAACAGTGGATTTGAGAAGAGTTTGAGAAAAAAAA  891

seq1  AAGGGAAAGACTGGGGCTAGGGCTTTGGGCAGCGCGAACTATGAGGTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAAGACTGGGGCTAGGGCTTTGGGCAGCGCGAACTATGAGGTTCA  941

seq1  TTTAGAGCAAACGATTTAGAATAAATGAGAGAATCCTGTGGCTTTTGGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGCAAACGATTTAGAATAAATGAGAGAATCCTGTGGCTTTTGGCT  991

seq1  GGAGGCAAAGGAAATCCCACGTCAGGCTCTCCTGCCTCTGTGCCTCCATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAAAGGAAATCCCACGTCAGGCTCTCCTGCCTCTGTGCCTCCATC  1041

seq1  CAAATCCACTGGAAAGAAGAGCATTTACTCGCTTTGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCACTGGAAAGAAGAGCATTTACTCGCTTTGAATTC  1082