BAC Information

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BAC

Clone NameB6Ng01-086J21
Chromosome4 (Build37)
Map Location 54,741,311 - 54,874,847
singlet/doubletdoublet
Overlap geneLOC384018
Upstream geneFcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280, LOC666901, LOC100041303
Downstream geneEG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086J21.bB6Ng01-086J21.g
ACCDH899965DH899966
length1,169971
definitionDH899965|Mus musculus domesticus DNA, BAC clone: B6Ng01-086J21, 5' end.DH899966|Mus musculus domesticus DNA, BAC clone: B6Ng01-086J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,873,670 - 54,874,847)(54,741,311 - 54,742,275)
sequence
gaattcactttgtagatcaggctggcctcgaactcagagatccgcctgcc
tctatctcccacgtgctgggattaaaggcatgtgccaccacgccccgaaa
gtgcttatttctcaatgtgtgaggccctaggtttgatcccctgcactgta
ctaaatgggttccagtggaacactcctctaatcctagaatgcaggaggtg
aagacaggaggaacagaagtttaaagatactctcagctgtatactagact
taagaccagacttggctacatgaggccctgtctcaaaatattatattaaa
taaaatgagaaatttaatgataccaaataaaattatgctgacatattcac
acggcatctacatagatgctgggtacatcctatctgcacacttacacagt
atcctctgagccaccactgcacctaaagtagtttaaagagatgttgatat
tgataaccactaagcttggtcccaagaataaacaattgatgactgaaaag
aaaacagggagggggggtcataaagaatcctgccattgtaccataaaacg
aagaaacaacaaaaccgcaataacaaaagtttccagcacaatgaagatct
ttagaaatctcctctactaagccctggacacagtttatttttgactcctg
gtagtaaatatacttccacgcatgcctccctcttgcaagcaagatgtcat
gttttactgtttggtccatttaaagtgacatgaaactttacaactggggc
ccatgctttgttggctgatgtggtattgtgccaggcctttgactctgggg
ttgttaatttatgtccatagtaaccctattagagaagtattatcactccc
attgtgtagataatatgacccagataatttccccctacatcatagaattc
tttgtgctgttctttcccatgtctttacaaagtcagaaaagagaacagta
gtatgatgtgattaaaatgtgacataccaccccatagactcatatatttg
agtgcttggtctcgactggaggtgctgttgggaacattgtgaaatcttta
ggatgaagagctgtgttggggaatgtgggtcactggggccagcttgagtc
atgtaacctggcccctaatcagttagcttctcgattgactacgaatgcag
gtgaacgtcaccttggtgc
gaattctcctaagtcatgaaactagaaaactgggattaagagagaagaag
atcgtaaaggaagtgggaaatcgtgtaatgggagagatctaatagggaag
cagaaatgaggactaaccggaagaaaaaatcatttgatggcaagaaaatg
gatgtagggatagtaggggggaagtgaataaaaaaagcatatatatgcat
atataaattgatggaccccattactttgattactaaatgcaatgaagaat
caggcaatagagaatcagaatgtggtcaggctgttgaaaggcctttgctt
cactgactctgatctcttactatatgagactcctatcttcatgagattcc
acttggattagtccatgtcgtcctagtgacactgttacctacttaacaca
tagaagatggaggtctgtggcagtcaaggctctatgccttctggttctaa
tttgtccgactcccccacttttctcagggctctagtaattctcactgtag
ttcttgcctctcgttgtcccaggccttcacctgtacattcatatctcgtg
agagcattttcattccccagtgaatatgtctttaaaggtcttacccactc
tcatcacctccatgaattctttcttcatcttttttttactgtctaaattg
ggtcttcttgcttgttgcaagaggatagtattcacacttgccaccttgta
tcatgagatattttttgtacctttgcctccctccctggagactataaggt
acatagtgaaggtcataaaagcaagttgttagaggttggctggaaataat
agccataagttaaaagaggaaatgacttttgcatggataaggaaagaagg
aagttgatctttggaaacaaagtgaagcagaaagagtctcagaaacatgt
taagtgctcttctcttttgaaactggtaatacgcattcatccaaaggagt
catggagccccataatagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_54873670_54874847
seq2: B6Ng01-086J21.b_45_1213 (reverse)

seq1  GCACCAAGGTGAATGTTCACACTGCATCTGTAGTCAAGACGGAGAGAGCT  50
      ||||||||||| | |||||| ||||||  |||||||  |  |||| ||||
seq2  GCACCAAGGTG-ACGTTCAC-CTGCATTCGTAGTCA--ATCGAGA-AGCT  45

seq1  AACAGGAAATA-GGGCCAAGTTACATGACTTCAAGGCCTGCCCCAGTGAC  99
      ||| |  | || |||||| |||||||||| |||| ||  |||||||||||
seq2  AACTG--ATTAGGGGCCAGGTTACATGAC-TCAA-GCTGGCCCCAGTGAC  91

seq1  CCACATTCCCCAACACAGCTCTTCATCCTAAAGATTTCACAATGTTCCAA  149
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCACATTCCCCAACACAGCTCTTCATCCTAAAGATTTCACAATGTTCCCA  141

seq1  ACAGCACCTCCAGTTGGAGACCAAGCACTCAAATATATGAGTCTATGGGG  199
      ||||||||||||| | ||||||||||||||||||||||||||||||||||
seq2  ACAGCACCTCCAG-TCGAGACCAAGCACTCAAATATATGAGTCTATGGGG  190

seq1  TGGTATGTCACATTTTAATCACATCATACTACTGTTCTCTTTTCTGACTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGTCACATTTTAATCACATCATACTACTGTTCTCTTTTCTGACTT  240

seq1  TGTAAAGACATGGGAAAGAACAGCACAAAGAATTCTATGATGTAGGGGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGACATGGGAAAGAACAGCACAAAGAATTCTATGATGTAGGGGGA  290

seq1  AATTATCTGGGTCATATTATCTACACAATGGGAGTGATAATACTTCTCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCTGGGTCATATTATCTACACAATGGGAGTGATAATACTTCTCTA  340

seq1  ATAGGGTTACTATGGACATAAATTAACAACCCCAGAGTCAAAGGCCTGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTTACTATGGACATAAATTAACAACCCCAGAGTCAAAGGCCTGGC  390

seq1  ACAATACCACATCAGCCAACAAAGCATGGGCCCCAGTTGTAAAGTTTCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACCACATCAGCCAACAAAGCATGGGCCCCAGTTGTAAAGTTTCAT  440

seq1  GTCACTTTAAATGGACCAAACAGTAAAACATGACATCTTGCTTGCAAGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTTAAATGGACCAAACAGTAAAACATGACATCTTGCTTGCAAGAG  490

seq1  GGAGGCATGCGTGGAAGTATATTTACTACCAGGAGTCAAAAATAAACTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCATGCGTGGAAGTATATTTACTACCAGGAGTCAAAAATAAACTGT  540

seq1  GTCCAGGGCTTAGTAGAGGAGATTTCTAAAGATCTTCATTGTGCTGGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGGCTTAGTAGAGGAGATTTCTAAAGATCTTCATTGTGCTGGAAA  590

seq1  CTTTTGTTATTGCGGTTTTGTTGTTTCTTCGTTTTATGGTACAATGGCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTATTGCGGTTTTGTTGTTTCTTCGTTTTATGGTACAATGGCAG  640

seq1  GATTCTTTATGACCCCCCCTCCCTGTTTTCTTTTCAGTCATCAATTGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTATGACCCCCCCTCCCTGTTTTCTTTTCAGTCATCAATTGTTT  690

seq1  ATTCTTGGGACCAAGCTTAGTGGTTATCAATATCAACATCTCTTTAAACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGGACCAAGCTTAGTGGTTATCAATATCAACATCTCTTTAAACT  740

seq1  ACTTTAGGTGCAGTGGTGGCTCAGAGGATAGTGTGTAAGTGTGCAGATAG  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACTTTAGGTGCAGTGGTGGCTCAGAGGATACTGTGTAAGTGTGCAGATAG  790

seq1  GATGTACCCAGCATCTATGTAGATGCCGTGTGAATATGTCAGCATAATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACCCAGCATCTATGTAGATGCCGTGTGAATATGTCAGCATAATTT  840

seq1  TATTTGGTATCATTAAATTTCTCATTTTATTTAATATAATATTTTGAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGTATCATTAAATTTCTCATTTTATTTAATATAATATTTTGAGAC  890

seq1  AGGGCCTCATGTAGCCAAGTCTGGTCTTAAGTCTAGTATACAGCTGAGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTCATGTAGCCAAGTCTGGTCTTAAGTCTAGTATACAGCTGAGAG  940

seq1  TATCTTTAAACTTCTGTTCCTCCTGTCTTCACCTCCTGCATTCTAGGATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTAAACTTCTGTTCCTCCTGTCTTCACCTCCTGCATTCTAGGATT  990

seq1  AGAGGAGTGTTCCACTGGAACCCATTTAGTACAGTGCAGGGGATCAAACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGTGTTCCACTGGAACCCATTTAGTACAGTGCAGGGGATCAAACC  1040

seq1  TAGGGCCTCACACATTGAGAAATAAGCACTTTCGGGGCGTGGTGGCACAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCCTCACACATTGAGAAATAAGCACTTTCGGGGCGTGGTGGCACAT  1090

seq1  GCCTTTAATCCCAGCACGTGGGAGATAGAGGCAGGCGGATCTCTGAGTTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCCCAGCACGTGGGAGATAGAGGCAGGCGGATCTCTGAGTTC  1140

seq1  GAGGCCAGCCTGATCTACAAAGTGAATTC  1178
      |||||||||||||||||||||||||||||
seq2  GAGGCCAGCCTGATCTACAAAGTGAATTC  1169

seq1: chr4_54741311_54742275
seq2: B6Ng01-086J21.g_68_1038

seq1  GAATTCTCCTAAGTCATGAAACTAGAAAACTGGGATTAAGAGAGAAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTAAGTCATGAAACTAGAAAACTGGGATTAAGAGAGAAGAAG  50

seq1  ATCGTAAAGGAAGTGGGAAATCGTGTAATGGGAGAGATCTAATAGGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTAAAGGAAGTGGGAAATCGTGTAATGGGAGAGATCTAATAGGGAAG  100

seq1  CAGAAATGAGGACTAACCGGAAGAAAAAATCATTTGATGGCAAGAAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGAGGACTAACCGGAAGAAAAAATCATTTGATGGCAAGAAAATG  150

seq1  GATGTAGGGATAGTAGGGGGGAAGTGAATAAAAAAAGCATATATATGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGGGATAGTAGGGGGGAAGTGAATAAAAAAAGCATATATATGCAT  200

seq1  ATATAAATTGATGGACCCCATTACTTTGATTACTAAATGCAATGAAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATTGATGGACCCCATTACTTTGATTACTAAATGCAATGAAGAAT  250

seq1  CAGGCAATAGAGAATCAGAATGTGGTCAGGCTGTTGAAAGGCCTTTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAATAGAGAATCAGAATGTGGTCAGGCTGTTGAAAGGCCTTTGCTT  300

seq1  CACTGACTCTGATCTCTTACTATATGAGACTCCTATCTTCATGAGATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTCTGATCTCTTACTATATGAGACTCCTATCTTCATGAGATTCC  350

seq1  ACTTGGATTAGTCCATGTCGTCCTAGTGACACTGTTACCTACTTAACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGATTAGTCCATGTCGTCCTAGTGACACTGTTACCTACTTAACACA  400

seq1  TAGAAGATGGAGGTCTGTGGCAGTCAAGGCTCTATGCCTTCTGGTTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGATGGAGGTCTGTGGCAGTCAAGGCTCTATGCCTTCTGGTTCTAA  450

seq1  TTTGTCCGACTCCCCCACTTTTCTCAGGGCTCTAGTAATTCTCACTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCGACTCCCCCACTTTTCTCAGGGCTCTAGTAATTCTCACTGTAG  500

seq1  TTCTTGCCTCTCGTTGTCCCAGGCCTTCACCTGTACATTCATATCTCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCCTCTCGTTGTCCCAGGCCTTCACCTGTACATTCATATCTCGTG  550

seq1  AGAGCATTTTCATTCCCCAGTGAATATGTCTTTAAAGGTCTTACCCACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATTTTCATTCCCCAGTGAATATGTCTTTAAAGGTCTTACCCACTC  600

seq1  TCATCACCTCCATGAATTCTTTCTTCATCTTTTTTTTACTGTCTAAATT-  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCATCACCTCCATGAATTCTTTCTTCATCTTTTTTTTACTGTCTAAATTG  650

seq1  GGTCTTCTTGCTTGTTGCAAGAGGATAGTATTCACACTTGCCACCTTGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCTTGCTTGTTGCAAGAGGATAGTATTCACACTTGCCACCTTGTA  700

seq1  TCATGAGATA-TTTTTGTACC-TTGCCTCCCTCCCTGGAGACTATAAGGT  747
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  TCATGAGATATTTTTTGTACCTTTGCCTCCCTCCCTGGAGACTATAAGGT  750

seq1  ACATAGTGAAGGTCAT-AAAGCAAGTTGTTAGAGGTTGGCTGGAAATAAT  796
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACATAGTGAAGGTCATAAAAGCAAGTTGTTAGAGGTTGGCTGGAAATAAT  800

seq1  AGCCATAAG-TAAAAGAGGAAATGACTTTTGCATGGATAAGGAAAGAAGG  845
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAAGTTAAAAGAGGAAATGACTTTTGCATGGATAAGGAAAGAAGG  850

seq1  AAGGTGATCTTTGGAAACAAAGTGAAAGCAGAAAGAGTCTCAGGAAACAT  895
      ||| |||||||||||||||||||| ||||||||||||||||| |||||||
seq2  AAGTTGATCTTTGGAAACAAAGTG-AAGCAGAAAGAGTCTCA-GAAACAT  898

seq1  GTTAAGTGCTCTTCTCTTTTGAAACT-GTCATACGCATTCATCCAAAAGA  944
      |||||||||||||||||||||||||| || ||||||||||||||||| ||
seq2  GTTAAGTGCTCTTCTCTTTTGAAACTGGTAATACGCATTCATCCAAAGGA  948

seq1  GTCAT-GAGCCCCA-AATAGCCA  965
      ||||| |||||||| ||||||||
seq2  GTCATGGAGCCCCATAATAGCCA  971